Wall clock time and date at job start Tue Mar 31 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45643 * 117.89711 * 2 1 4 4 C 1.52943 * 111.14438 * 156.94857 * 3 2 1 5 5 N 1.47444 * 108.26415 * 47.13739 * 4 3 2 6 6 C 1.36944 * 121.39419 * 120.17943 * 5 4 3 7 7 H 1.08002 * 119.99630 * 210.01545 * 6 5 4 8 8 C 1.38812 * 119.99949 * 30.01030 * 6 5 4 9 9 N 1.31615 * 120.00077 * 15.42175 * 8 6 5 10 10 Si 1.86805 * 119.99697 * 195.41922 * 8 6 5 11 11 H 1.48501 * 109.46808 * 90.00328 * 10 8 6 12 12 H 1.48501 * 109.46943 * 210.00203 * 10 8 6 13 13 H 1.48501 * 109.47349 * 330.00225 * 10 8 6 14 14 C 1.46221 * 117.19976 * 300.21679 * 5 4 3 15 15 C 1.54408 * 110.20192 * 163.27519 * 14 5 4 16 16 C 1.55262 * 101.42990 * 83.60862 * 15 14 5 17 17 N 1.47488 * 104.80333 * 36.56500 * 16 15 14 18 18 C 1.34773 * 125.66299 * 155.95007 * 17 16 15 19 19 O 1.21700 * 120.00019 * 179.69283 * 18 17 16 20 20 C 1.46655 * 120.00456 * 359.96799 * 18 17 16 21 21 C 1.36541 * 125.99080 * 179.43940 * 20 18 17 22 22 C 1.40372 * 106.70881 * 179.85643 * 21 20 18 23 23 C 1.35134 * 107.11017 * 0.40345 * 22 21 20 24 24 O 1.33925 * 108.76941 * 359.75062 * 23 22 21 25 25 C 1.47198 * 108.66763 * 335.68773 * 17 16 15 26 26 C 1.33733 * 117.88790 * 180.02562 * 2 1 3 27 27 O 1.21282 * 118.75906 * 4.58581 * 26 2 1 28 28 H 1.08999 * 109.47116 * 269.98088 * 1 2 3 29 29 H 1.09000 * 109.46625 * 29.97789 * 1 2 3 30 30 H 1.08991 * 109.47428 * 149.97638 * 1 2 3 31 31 H 1.08996 * 109.14520 * 277.38025 * 3 2 1 32 32 H 1.08996 * 109.14438 * 36.51970 * 3 2 1 33 33 H 1.08997 * 109.70307 * 166.83187 * 4 3 2 34 34 H 1.08996 * 109.70694 * 287.40218 * 4 3 2 35 35 H 0.96994 * 119.99556 * 179.97438 * 9 8 6 36 36 H 1.08997 * 111.01515 * 201.83848 * 15 14 5 37 37 H 1.08994 * 111.01674 * 325.67867 * 15 14 5 38 38 H 1.08996 * 110.48555 * 277.69740 * 16 15 14 39 39 H 1.09001 * 110.32375 * 155.35280 * 16 15 14 40 40 H 1.08000 * 126.64538 * 359.97438 * 21 20 18 41 41 H 1.08000 * 126.44278 * 180.15398 * 22 21 20 42 42 H 1.07999 * 125.60812 * 179.77862 * 23 22 21 43 43 H 1.09005 * 109.91216 * 121.15495 * 25 17 16 44 44 H 1.08999 * 109.91257 * 242.23783 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1465 1.2872 0.0000 4 6 3.5647 1.1606 0.5585 5 7 4.2120 0.0014 -0.0825 6 6 5.3577 0.1414 -0.8195 7 1 5.5563 -0.5301 -1.6418 8 6 6.2638 1.1464 -0.5097 9 7 6.1903 1.7641 0.6502 10 14 7.5874 1.6220 -1.7391 11 1 7.0760 2.6982 -2.6254 12 1 8.7871 2.1084 -1.0114 13 1 7.9514 0.4377 -2.5577 14 6 3.5789 -1.3038 0.1010 15 6 4.1137 -2.3075 -0.9434 16 6 5.4244 -2.7888 -0.2645 17 7 5.1053 -2.8440 1.1744 18 6 5.7336 -3.6080 2.0898 19 8 5.3876 -3.5686 3.2559 20 6 6.8380 -4.4823 1.6818 21 6 7.5636 -5.2955 2.5045 22 6 8.5084 -5.9474 1.6965 23 6 8.3263 -5.5023 0.4337 24 8 7.3191 -4.6197 0.4289 25 6 3.9908 -1.9214 1.4455 26 6 2.0906 -1.1820 -0.0005 27 8 1.4268 -2.1935 -0.0860 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3632 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5141 31 1 2.1969 1.6650 -1.0211 32 1 1.5824 1.9903 0.6128 33 1 4.1292 2.0662 0.3365 34 1 3.5227 1.0090 1.6371 35 1 6.8236 2.4661 0.8667 36 1 3.4165 -3.1334 -1.0846 37 1 4.3250 -1.8109 -1.8904 38 1 6.2313 -2.0791 -0.4469 39 1 5.6990 -3.7783 -0.6302 40 1 7.4342 -5.4154 3.5699 41 1 9.2452 -6.6662 2.0235 42 1 8.8986 -5.8084 -0.4296 43 1 3.1518 -2.4689 1.8751 44 1 4.3147 -1.1398 2.1327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096229596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:31 Heat of formation + Delta-G solvation = 2.967162 kcal Electronic energy + Delta-G solvation = -30514.555581 eV Core-core repulsion = 26435.541991 eV Total energy + Delta-G solvation = -4079.013590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.54685 -40.47072 -38.89296 -37.06469 -35.98855 -34.15369 -32.97671 -31.93139 -30.52957 -29.75672 -28.64927 -28.18351 -26.38305 -24.62651 -23.81241 -22.08706 -21.83393 -21.67276 -20.90854 -19.61578 -17.99124 -17.59259 -16.94651 -16.54172 -16.28566 -16.15958 -15.58434 -15.26308 -15.10185 -14.86567 -14.60940 -13.88949 -13.49774 -13.34380 -13.27433 -13.09445 -12.87248 -12.62865 -12.56803 -12.45245 -12.24183 -12.08763 -11.84627 -11.60807 -11.22227 -11.13602 -11.11403 -10.80267 -10.70300 -10.36994 -10.12427 -10.08433 -9.97221 -9.89581 -9.29155 -8.70814 -8.64521 -8.27422 -8.08159 -6.97952 -6.04267 -3.53298 1.25928 2.44649 2.80422 3.06151 3.23759 3.31302 3.33033 3.34156 3.52429 3.59865 4.24514 4.70267 4.97080 4.97618 4.99702 5.03350 5.13728 5.16390 5.42887 5.55416 5.62886 5.67780 5.69789 5.80068 5.83144 5.93631 5.98675 6.00583 6.02740 6.08552 6.18520 6.30706 6.38990 6.41714 6.55413 6.64522 6.72798 6.79170 6.88962 7.01023 7.26216 7.56153 7.87386 7.89512 8.12311 8.40555 8.61037 8.88410 9.50386 10.07259 11.03805 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010301 B = 0.005467 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.566863 B = 5120.100758 C = 6899.663356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.601 5.601 3 C 0.090 3.910 4 C 0.147 3.853 5 N -0.570 5.570 6 C -0.261 4.261 7 H 0.077 0.923 8 C 0.014 3.986 9 N -0.893 5.893 10 Si 0.904 3.096 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.276 1.276 14 C 0.171 3.829 15 C -0.114 4.114 16 C 0.106 3.894 17 N -0.586 5.586 18 C 0.609 3.391 19 O -0.534 6.534 20 C -0.056 4.056 21 C -0.133 4.133 22 C -0.226 4.226 23 C -0.018 4.018 24 O -0.155 6.155 25 C 0.114 3.886 26 C 0.530 3.470 27 O -0.562 6.562 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.031 0.969 35 H 0.258 0.742 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.207 0.793 43 H 0.061 0.939 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 -6.816 -2.683 7.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.333 5.333 3 C -0.034 4.034 4 C 0.021 3.979 5 N -0.292 5.292 6 C -0.389 4.389 7 H 0.095 0.905 8 C -0.186 4.186 9 N -0.536 5.536 10 Si 0.734 3.266 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.201 1.201 14 C 0.078 3.922 15 C -0.153 4.153 16 C -0.016 4.016 17 N -0.317 5.317 18 C 0.397 3.603 19 O -0.414 6.414 20 C -0.109 4.109 21 C -0.154 4.154 22 C -0.245 4.245 23 C -0.088 4.088 24 O -0.050 6.050 25 C -0.012 4.012 26 C 0.318 3.682 27 O -0.440 6.440 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.175 0.825 41 H 0.171 0.829 42 H 0.223 0.777 43 H 0.079 0.921 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.466 -6.991 -2.273 7.496 hybrid contribution 0.963 0.381 -0.354 1.095 sum -0.502 -6.610 -2.627 7.131 Atomic orbital electron populations 1.21656 0.80981 1.02707 1.01369 1.47283 1.06597 1.06905 1.72504 1.22281 0.96679 0.83017 1.01421 1.21350 0.87670 0.94290 0.94577 1.44067 1.27170 0.98564 1.59409 1.19090 0.96196 1.15955 1.07695 0.90535 1.25129 0.97212 1.00458 0.95820 1.69947 1.37787 1.26249 1.19577 0.86267 0.81055 0.78788 0.80523 1.21149 1.21645 1.20125 1.20316 0.88017 0.89668 0.94205 1.22787 0.96071 0.97689 0.98761 1.22684 0.98890 1.01439 0.78631 1.48170 1.33966 1.40288 1.09252 1.16144 0.80304 0.79251 0.84605 1.90844 1.65617 1.67987 1.16968 1.22151 1.01320 1.04827 0.82563 1.21895 0.95623 0.96791 1.01050 1.21788 1.03725 1.05810 0.93205 1.24391 0.91452 0.92966 0.99973 1.84238 1.40342 1.50296 1.30097 1.22465 0.88115 0.92082 0.98498 1.20213 0.90569 0.82534 0.74930 1.90621 1.66698 1.35477 1.51244 0.93179 0.91756 0.90650 0.92238 0.91759 0.86627 0.95107 0.93147 0.90213 0.88442 0.88487 0.90952 0.82482 0.82934 0.77669 0.92120 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 10.25 59.85 0.61 1.69 16 2 N -0.60 -10.56 3.21 -183.04 -0.59 -11.15 16 3 C 0.09 1.51 6.49 -4.53 -0.03 1.48 16 4 C 0.15 3.03 5.54 -3.55 -0.02 3.01 16 5 N -0.57 -12.48 2.60 -158.52 -0.41 -12.89 16 6 C -0.26 -6.09 7.40 -15.06 -0.11 -6.20 16 7 H 0.08 1.73 5.45 -52.49 -0.29 1.45 16 8 C 0.01 0.35 5.00 -17.43 -0.09 0.26 16 9 N -0.89 -23.10 11.16 55.49 0.62 -22.48 16 10 Si 0.90 19.61 29.58 -169.99 -5.03 14.58 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 13 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 14 C 0.17 3.50 0.84 -132.57 -0.11 3.39 16 15 C -0.11 -2.12 5.53 -24.79 -0.14 -2.26 16 16 C 0.11 1.95 5.71 -2.30 -0.01 1.94 16 17 N -0.59 -12.00 3.33 -172.11 -0.57 -12.57 16 18 C 0.61 12.51 7.82 -12.87 -0.10 12.41 16 19 O -0.53 -12.22 17.19 5.19 0.09 -12.13 16 20 C -0.06 -0.97 6.93 -36.80 -0.26 -1.23 16 21 C -0.13 -1.97 10.62 -39.39 -0.42 -2.39 16 22 C -0.23 -2.63 10.88 -39.88 -0.43 -3.07 16 23 C -0.02 -0.20 12.08 29.63 0.36 0.16 16 24 O -0.15 -2.36 7.86 5.00 0.04 -2.32 16 25 C 0.11 2.43 6.17 -3.36 -0.02 2.41 16 26 C 0.53 10.62 6.34 -11.94 -0.08 10.55 16 27 O -0.56 -12.10 15.25 5.56 0.08 -12.02 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.73 8.01 -51.93 -0.42 0.32 16 30 H 0.07 1.12 7.12 -51.93 -0.37 0.75 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.12 2.61 5.91 -51.93 -0.31 2.31 16 34 H 0.03 0.67 7.93 -51.93 -0.41 0.26 16 35 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 36 H 0.08 1.45 7.38 -51.93 -0.38 1.07 16 37 H 0.10 1.78 6.44 -51.93 -0.33 1.44 16 38 H 0.10 1.97 6.32 -51.93 -0.33 1.64 16 39 H 0.07 1.18 6.22 -51.93 -0.32 0.86 16 40 H 0.16 2.18 8.06 -52.49 -0.42 1.75 16 41 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.21 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.06 1.31 7.73 -51.93 -0.40 0.90 16 44 H 0.08 1.92 7.78 -51.93 -0.40 1.52 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -30.31 352.24 -6.94 -37.24 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.63 Total: 6.28 kcal Atomic # 6 Polarization: 22.99 SS G_CDS: -0.84 Total: 22.14 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.95 Total: -59.09 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: 0.21 Total: -26.46 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.31 -6.94 -37.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096229596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.210 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds