Wall clock time and date at job start Tue Mar 31 2020 05:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47197 * 110.99899 * 2 1 4 4 C 1.52976 * 108.72003 * 54.29644 * 3 2 1 5 5 N 1.46012 * 110.05602 * 50.21705 * 4 3 2 6 6 C 1.37099 * 118.52693 * 161.88320 * 5 4 3 7 7 H 1.08001 * 120.00026 * 201.35452 * 6 5 4 8 8 C 1.38954 * 119.99808 * 21.36330 * 6 5 4 9 9 N 1.31406 * 119.99958 * 16.34322 * 8 6 5 10 10 Si 1.86805 * 119.99802 * 196.33734 * 8 6 5 11 11 H 1.48502 * 109.46957 * 60.00318 * 10 8 6 12 12 H 1.48497 * 109.46870 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47282 * 300.00197 * 10 8 6 14 14 C 1.33702 * 122.94485 * 341.91225 * 5 4 3 15 15 O 1.21296 * 118.63075 * 181.76612 * 14 5 4 16 16 C 1.46925 * 111.00341 * 122.86371 * 2 1 3 17 17 C 1.53154 * 109.32432 * 166.83456 * 16 2 1 18 18 C 1.53034 * 109.24860 * 182.66642 * 17 16 2 19 19 N 1.46839 * 109.51909 * 59.24337 * 18 17 16 20 20 C 1.46904 * 111.00378 * 174.18041 * 19 18 17 21 21 C 1.50699 * 109.47278 * 169.99830 * 20 19 18 22 22 C 1.41385 * 126.57835 * 90.00389 * 21 20 19 23 23 C 1.34509 * 106.83744 * 179.97438 * 22 21 20 24 24 O 1.34306 * 108.42734 * 0.26074 * 23 22 21 25 25 C 1.34305 * 109.47153 * 359.56614 * 24 23 22 26 26 C 1.46844 * 111.21987 * 298.29548 * 19 18 17 27 27 C 1.53034 * 109.53366 * 61.68424 * 26 19 18 28 28 H 1.08997 * 109.46992 * 297.13562 * 1 2 3 29 29 H 1.08997 * 109.47618 * 57.13567 * 1 2 3 30 30 H 1.08999 * 109.47102 * 177.13369 * 1 2 3 31 31 H 1.08997 * 109.59439 * 294.52517 * 3 2 1 32 32 H 1.08995 * 109.59203 * 174.06720 * 3 2 1 33 33 H 1.09001 * 109.37875 * 290.03370 * 4 3 2 34 34 H 1.09009 * 109.37200 * 170.39271 * 4 3 2 35 35 H 0.97007 * 120.00044 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.50905 * 62.74022 * 17 16 2 37 37 H 1.08993 * 109.51366 * 302.60129 * 17 16 2 38 38 H 1.08998 * 109.46688 * 299.22451 * 18 17 16 39 39 H 1.09003 * 109.46140 * 179.25358 * 18 17 16 40 40 H 1.09000 * 109.46733 * 50.00214 * 20 19 18 41 41 H 1.08997 * 109.47301 * 290.00069 * 20 19 18 42 42 H 1.07995 * 126.58075 * 0.02562 * 22 21 20 43 43 H 1.07999 * 125.78829 * 180.02562 * 23 22 21 44 44 H 1.08002 * 125.79404 * 180.13890 * 25 24 23 45 45 H 1.09003 * 109.46409 * 181.71602 * 26 19 18 46 46 H 1.09006 * 109.45434 * 301.66975 * 26 19 18 47 47 H 1.09004 * 109.50851 * 180.85923 * 27 26 19 48 48 H 1.09001 * 109.50289 * 60.73196 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3742 0.0000 4 6 1.3830 2.1356 1.1765 5 7 1.5299 1.3610 2.4055 6 6 1.3948 2.0073 3.6070 7 1 1.8221 1.5791 4.5016 8 6 0.7079 3.2134 3.6736 9 7 -0.0771 3.5779 2.6848 10 14 0.9003 4.3164 5.1689 11 1 2.3256 4.7067 5.3159 12 1 0.0685 5.5343 4.9959 13 1 0.4596 3.5849 6.3837 14 6 1.7910 0.0497 2.4117 15 8 1.8652 -0.5231 3.4783 16 6 1.9956 -0.7443 1.1521 17 6 3.4910 -1.0038 0.9472 18 6 4.0233 -1.8363 2.1158 19 7 3.2933 -3.1085 2.1846 20 6 3.8693 -3.9915 3.2077 21 6 2.9584 -5.1727 3.4224 22 6 3.0034 -6.4073 2.7349 23 6 2.0168 -7.1701 3.2389 24 8 1.3765 -6.4649 4.1858 25 6 1.9470 -5.2549 4.3054 26 6 1.8617 -2.8874 2.4259 27 6 1.2654 -2.0856 1.2668 28 1 -0.3633 0.4687 0.9145 29 1 -0.3634 0.5576 -0.8631 30 1 -0.3633 -1.0264 -0.0514 31 1 1.7295 1.8682 -0.9342 32 1 3.0809 1.3494 0.1061 33 1 0.3245 2.3089 0.9827 34 1 1.8896 3.0941 1.2905 35 1 -0.5569 4.4197 2.7315 36 1 4.0230 -0.0534 0.9054 37 1 3.6417 -1.5475 0.0147 38 1 3.8837 -1.2866 3.0467 39 1 5.0848 -2.0343 1.9668 40 1 3.9779 -3.4418 4.1426 41 1 4.8468 -4.3419 2.8765 42 1 3.6973 -6.6849 1.9553 43 1 1.7774 -8.1773 2.9313 44 1 1.6421 -4.4778 4.9907 45 1 1.3535 -3.8487 2.5020 46 1 1.7315 -2.3335 3.3556 47 1 0.2062 -1.9086 1.4537 48 1 1.3834 -2.6448 0.3387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096230109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:25 Heat of formation + Delta-G solvation = 32.783002 kcal Electronic energy + Delta-G solvation = -31114.329327 eV Core-core repulsion = 27172.441744 eV Total energy + Delta-G solvation = -3941.887583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.51218 -40.65284 -37.71300 -36.27153 -35.02636 -33.36534 -31.74168 -31.09731 -30.51052 -29.37439 -28.44122 -26.62823 -25.28759 -24.77621 -22.74979 -22.05196 -21.49516 -21.43603 -20.40654 -19.93555 -17.75247 -17.27659 -16.74742 -16.37778 -15.88410 -15.42533 -15.06738 -14.89618 -14.73890 -14.44945 -14.41325 -14.00631 -13.87138 -13.68234 -13.14391 -12.82208 -12.72927 -12.47182 -12.36468 -12.19927 -11.86154 -11.69002 -11.51874 -11.43343 -11.36027 -11.12766 -10.98768 -10.90613 -10.60885 -10.57659 -10.39318 -10.26146 -10.16142 -9.83697 -9.57923 -9.09709 -8.80728 -8.47027 -7.79780 -7.71341 -7.29806 -6.32376 -3.95056 1.82574 2.64836 3.12956 3.19664 3.21115 3.23195 3.83093 4.02961 4.31700 4.46485 4.82741 4.84028 4.96724 5.02176 5.13560 5.24072 5.29360 5.45736 5.55799 5.68408 5.71347 5.80930 5.82459 5.84716 5.90748 5.98103 6.02054 6.05438 6.15074 6.16637 6.21877 6.24846 6.30588 6.38261 6.39594 6.42724 6.52598 6.55202 6.63237 6.75025 6.90782 7.17824 7.19912 7.43952 7.47379 7.50502 7.52527 7.57526 8.12091 8.41814 9.14483 9.41945 9.92901 10.63899 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015635 B = 0.003843 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.388316 B = 7284.369572 C = 8112.137969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.525 5.525 3 C 0.023 3.977 4 C 0.099 3.901 5 N -0.432 5.432 6 C -0.312 4.312 7 H 0.099 0.901 8 C 0.033 3.967 9 N -0.880 5.880 10 Si 0.924 3.076 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.428 3.572 15 O -0.587 6.587 16 C 0.105 3.895 17 C -0.087 4.087 18 C 0.053 3.947 19 N -0.527 5.527 20 C 0.124 3.876 21 C -0.168 4.168 22 C -0.194 4.194 23 C -0.055 4.055 24 O -0.179 6.179 25 C -0.034 4.034 26 C 0.031 3.969 27 C -0.084 4.084 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.268 0.732 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.146 0.854 43 H 0.198 0.802 44 H 0.200 0.800 45 H 0.063 0.937 46 H 0.091 0.909 47 H 0.062 0.938 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 -12.241 -4.511 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.249 5.249 3 C -0.105 4.105 4 C -0.026 4.026 5 N -0.150 5.150 6 C -0.440 4.440 7 H 0.117 0.883 8 C -0.170 4.170 9 N -0.519 5.519 10 Si 0.751 3.249 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.198 1.198 14 C 0.215 3.785 15 O -0.472 6.472 16 C 0.012 3.988 17 C -0.126 4.126 18 C -0.075 4.075 19 N -0.252 5.252 20 C -0.003 4.003 21 C -0.170 4.170 22 C -0.213 4.213 23 C -0.123 4.123 24 O -0.075 6.075 25 C -0.103 4.103 26 C -0.096 4.096 27 C -0.123 4.123 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.164 0.836 43 H 0.215 0.785 44 H 0.217 0.783 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.081 0.919 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.503 -12.868 -4.790 14.450 hybrid contribution -0.272 1.737 1.820 2.530 sum 4.231 -11.131 -2.970 12.273 Atomic orbital electron populations 1.22485 0.87716 1.01699 1.01565 1.62745 1.08177 1.13587 1.40397 1.22808 1.00002 0.88731 0.98974 1.21970 1.03131 0.94301 0.83166 1.43251 1.59745 1.05603 1.06375 1.19644 1.33370 1.03082 0.87866 0.88311 1.25300 0.94635 0.98532 0.98549 1.69964 1.26053 1.23169 1.32757 0.86026 0.78355 0.79083 0.81424 1.19960 1.20932 1.19839 1.20248 0.84609 0.82644 0.90996 1.90306 1.57487 1.67291 1.32150 1.21166 0.96267 0.94039 0.87341 1.21443 0.92984 0.99204 0.98931 1.22103 0.96642 0.89727 0.99057 1.62142 1.03588 1.13666 1.45844 1.20363 0.95787 0.90070 0.94114 1.20342 1.00351 0.96944 0.99319 1.21688 1.01969 0.94168 1.03500 1.23943 0.96198 0.98546 0.93582 1.84064 1.50534 1.24400 1.48481 1.24014 0.96227 0.86714 1.03331 1.22665 0.87288 0.99112 1.00551 1.21446 0.98383 0.93277 0.99168 0.93744 0.91734 0.91584 0.89883 0.90960 0.89033 0.91654 0.92184 0.91876 0.90386 0.92596 0.91682 0.94095 0.90447 0.83617 0.78516 0.78291 0.91915 0.89126 0.91918 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 8.09 60.06 0.49 0.72 16 2 N -0.53 -9.34 4.89 -228.31 -1.12 -10.45 16 3 C 0.02 0.41 5.96 -3.67 -0.02 0.39 16 4 C 0.10 2.18 3.98 -4.32 -0.02 2.16 16 5 N -0.43 -10.76 2.78 -115.64 -0.32 -11.08 16 6 C -0.31 -8.52 9.13 -14.93 -0.14 -8.65 16 7 H 0.10 2.85 7.26 -52.49 -0.38 2.47 16 8 C 0.03 0.86 5.04 -17.47 -0.09 0.77 16 9 N -0.88 -22.95 10.57 55.50 0.59 -22.36 16 10 Si 0.92 20.55 29.58 -169.99 -5.03 15.52 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.43 10.02 5.36 -11.66 -0.06 9.96 16 15 O -0.59 -15.06 11.03 5.54 0.06 -15.00 16 16 C 0.11 1.99 0.44 -132.78 -0.06 1.93 16 17 C -0.09 -1.48 4.82 -26.63 -0.13 -1.61 16 18 C 0.05 0.89 5.17 -3.84 -0.02 0.87 16 19 N -0.53 -8.49 4.80 -236.12 -1.13 -9.62 16 20 C 0.12 1.77 5.79 -4.97 -0.03 1.74 16 21 C -0.17 -2.27 4.31 -104.74 -0.45 -2.72 16 22 C -0.19 -2.31 10.87 -39.70 -0.43 -2.74 16 23 C -0.06 -0.60 12.09 29.41 0.36 -0.24 16 24 O -0.18 -2.32 10.65 5.70 0.06 -2.26 16 25 C -0.03 -0.46 10.39 29.42 0.31 -0.15 16 26 C 0.03 0.55 4.50 -3.84 -0.02 0.53 16 27 C -0.08 -1.51 4.04 -26.64 -0.11 -1.62 16 28 H 0.04 0.93 5.95 -51.93 -0.31 0.62 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.05 6.25 -51.93 -0.32 0.73 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.24 6.27 -51.93 -0.33 0.92 16 33 H 0.09 2.17 5.61 -51.93 -0.29 1.88 16 34 H 0.07 1.51 7.63 -51.92 -0.40 1.11 16 35 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.06 1.08 6.56 -51.93 -0.34 0.74 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.12 6.21 -51.93 -0.32 0.80 16 39 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 40 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.20 2.45 8.06 -52.49 -0.42 2.03 16 45 H 0.06 1.06 5.66 -51.93 -0.29 0.77 16 46 H 0.09 1.90 5.04 -51.93 -0.26 1.64 16 47 H 0.06 1.16 6.50 -51.93 -0.34 0.82 16 48 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -29.65 353.92 -8.92 -38.57 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.94 Total: 10.01 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.42 Total: 1.33 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -1.98 Total: -53.52 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.12 Total: -17.25 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.65 -8.92 -38.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096230109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.353 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds