Wall clock time and date at job start Tue Mar 31 2020 05:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.46997 * 2 1 4 4 C 1.35823 * 116.99810 * 179.97438 * 3 2 1 5 5 C 1.38859 * 119.90702 * 359.97438 * 4 3 2 6 6 C 1.37748 * 120.17499 * 179.73662 * 5 4 3 7 7 C 1.39957 * 119.97338 * 0.55332 * 6 5 4 8 8 C 1.47002 * 120.09216 * 179.72014 * 7 6 5 9 9 C 1.34982 * 120.00002 * 316.07056 * 8 7 6 10 10 C 1.46261 * 120.00158 * 349.03429 * 9 8 7 11 11 O 1.21716 * 119.99643 * 353.21887 * 10 9 8 12 12 N 1.34769 * 119.99965 * 173.22030 * 10 9 8 13 13 C 1.46504 * 119.99910 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46830 * 324.99571 * 13 12 10 15 15 C 1.52997 * 109.47250 * 84.99603 * 13 12 10 16 16 C 1.50703 * 109.47059 * 205.00006 * 13 12 10 17 17 H 1.08000 * 119.99697 * 359.97438 * 16 13 12 18 18 C 1.37872 * 120.00178 * 180.02562 * 16 13 12 19 19 N 1.31521 * 119.99795 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00330 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47278 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47450 * 119.99638 * 20 18 16 23 23 H 1.48499 * 109.47088 * 239.99730 * 20 18 16 24 24 C 1.39956 * 119.81067 * 359.44686 * 7 6 5 25 25 C 1.38094 * 119.82662 * 0.27311 * 24 7 6 26 26 O 1.35991 * 119.98991 * 179.97438 * 25 24 7 27 27 C 1.42898 * 117.00152 * 0.02562 * 26 25 24 28 28 C 1.53004 * 109.47327 * 179.97438 * 27 26 25 29 29 H 1.08997 * 109.47264 * 299.99694 * 1 2 3 30 30 H 1.09005 * 109.47249 * 59.99669 * 1 2 3 31 31 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47162 * 240.00755 * 2 1 3 33 33 H 1.08995 * 109.47126 * 120.00376 * 2 1 3 34 34 H 1.08004 * 119.91214 * 0.02562 * 5 4 3 35 35 H 1.08005 * 120.01367 * 180.29578 * 6 5 4 36 36 H 1.07998 * 119.99951 * 136.07492 * 8 7 6 37 37 H 1.07997 * 119.99873 * 169.04297 * 9 8 7 38 38 H 0.97005 * 120.00362 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.47264 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.47230 * 60.00213 * 15 13 12 41 41 H 1.09001 * 109.47369 * 299.99899 * 15 13 12 42 42 H 0.96997 * 119.99831 * 179.97438 * 19 18 16 43 43 H 1.07993 * 120.08682 * 180.29393 * 24 7 6 44 44 H 1.09001 * 109.46896 * 299.99811 * 27 26 25 45 45 H 1.08993 * 109.47248 * 59.99702 * 27 26 25 46 46 H 1.09006 * 109.47251 * 179.97438 * 28 27 26 47 47 H 1.08992 * 109.46875 * 299.99958 * 28 27 26 48 48 H 1.09006 * 109.46913 * 60.00002 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3528 1.5253 0.0005 5 6 4.1969 0.4227 0.0016 6 6 5.5633 0.5967 -0.0033 7 6 6.1037 1.8877 0.0023 8 6 7.5616 2.0765 0.0033 9 6 8.3389 1.3247 0.8111 10 6 7.7281 0.4983 1.8518 11 8 6.5338 0.5809 2.0716 12 7 8.4876 -0.3547 2.5673 13 6 7.8756 -1.1829 3.6093 14 1 7.0751 -0.6241 4.0942 15 6 7.3014 -2.4535 2.9793 16 6 8.9183 -1.5560 4.6315 17 1 9.9351 -1.2109 4.5161 18 6 8.5743 -2.3385 5.7132 19 7 7.3360 -2.7591 5.8533 20 14 9.8668 -2.8015 6.9798 21 1 11.1723 -2.2074 6.5948 22 1 9.4615 -2.2858 8.3120 23 1 9.9945 -4.2798 7.0391 24 6 5.2522 2.9985 0.0012 25 6 3.8836 2.8147 0.0003 26 8 3.0531 3.8916 -0.0003 27 6 3.6652 5.1829 -0.0004 28 6 2.5802 6.2616 -0.0017 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.7809 -0.5741 0.0016 35 1 6.2174 -0.2627 -0.0073 36 1 8.0107 2.8167 -0.6423 37 1 9.4119 1.3337 0.6892 38 1 9.4393 -0.4208 2.3919 39 1 6.8457 -3.0695 3.7545 40 1 8.1019 -3.0123 2.4945 41 1 6.5472 -2.1836 2.2400 42 1 7.0941 -3.3099 6.6141 43 1 5.6645 3.9966 0.0007 44 1 4.2848 5.2913 0.8898 45 1 4.2854 5.2909 -0.8901 46 1 3.0471 7.2466 -0.0014 47 1 1.9610 6.1530 -0.8920 48 1 1.9596 6.1538 0.8879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096314607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:15 Heat of formation + Delta-G solvation = -67.826575 kcal Electronic energy + Delta-G solvation = -28723.611540 eV Core-core repulsion = 24745.068447 eV Total energy + Delta-G solvation = -3978.543093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.40336 -39.04899 -38.48150 -36.86072 -34.78881 -33.17706 -32.37656 -31.82639 -31.45910 -29.95169 -29.12887 -27.83544 -25.26932 -24.50922 -23.65450 -23.14083 -21.76233 -20.97482 -20.07862 -19.16603 -18.37218 -17.39340 -16.57611 -16.32463 -16.23930 -15.74014 -15.72730 -15.17078 -14.72900 -14.40402 -14.10115 -13.86402 -13.71900 -13.50457 -13.35459 -12.85491 -12.80954 -12.68844 -12.66198 -12.45654 -12.38121 -11.90130 -11.78651 -11.62507 -11.55556 -11.11457 -11.05062 -10.97563 -10.78472 -10.77789 -10.67001 -10.65231 -10.29256 -10.24169 -9.27860 -9.04098 -8.93888 -8.56600 -8.40510 -7.80658 -7.17388 -6.12648 -4.21665 1.02406 1.68862 2.18706 3.23018 3.29712 3.30885 3.32394 3.33526 4.01515 4.06145 4.20132 4.42919 4.81386 4.84209 4.89537 4.92931 4.99341 5.08411 5.14760 5.19695 5.22189 5.24205 5.38700 5.44441 5.50570 5.59726 5.63774 5.68115 5.70995 5.76539 5.87835 5.92653 5.98197 6.15918 6.37712 6.48954 6.60310 6.82140 6.89260 6.91200 6.95749 7.15377 7.25501 7.48140 7.58690 7.71011 7.79998 7.92924 8.15292 8.70311 8.80023 9.18243 9.46439 10.93335 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.002890 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.018757 B = 9685.757596 C =10744.295226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.308 6.308 4 C 0.110 3.890 5 C -0.182 4.182 6 C -0.020 4.020 7 C -0.062 4.062 8 C -0.044 4.044 9 C -0.197 4.197 10 C 0.520 3.480 11 O -0.540 6.540 12 N -0.703 5.703 13 C 0.264 3.736 14 H 0.049 0.951 15 C -0.145 4.145 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.883 5.883 20 Si 0.901 3.099 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.153 4.153 25 C 0.080 3.920 26 O -0.309 6.309 27 C 0.054 3.946 28 C -0.150 4.150 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.388 0.612 39 H 0.089 0.911 40 H 0.025 0.975 41 H 0.014 0.986 42 H 0.263 0.737 43 H 0.129 0.871 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 10.992 -15.558 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.222 6.222 4 C 0.065 3.935 5 C -0.201 4.201 6 C -0.039 4.039 7 C -0.063 4.063 8 C -0.063 4.063 9 C -0.218 4.218 10 C 0.307 3.693 11 O -0.420 6.420 12 N -0.349 5.349 13 C 0.162 3.838 14 H 0.066 0.934 15 C -0.203 4.203 16 C -0.571 4.571 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.521 5.521 20 Si 0.728 3.272 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.172 4.172 25 C 0.036 3.964 26 O -0.224 6.224 27 C -0.021 4.021 28 C -0.207 4.207 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.220 0.780 39 H 0.108 0.892 40 H 0.044 0.956 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.147 0.853 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.572 11.045 -15.218 20.271 hybrid contribution 1.692 -0.528 0.861 1.971 sum -5.880 10.516 -14.357 18.743 Atomic orbital electron populations 1.21744 0.93016 1.02566 1.03307 1.22768 0.95634 0.82417 1.01500 1.86070 1.18594 1.28611 1.88963 1.18263 0.82682 0.91075 1.01514 1.20839 0.93953 0.97081 1.08214 1.20780 0.93832 0.95951 0.93292 1.18482 0.92396 0.92645 1.02770 1.22156 0.91981 0.95984 0.96227 1.23282 1.00134 1.00604 0.97773 1.18376 0.87206 0.80757 0.82990 1.90852 1.14472 1.68091 1.68607 1.46544 1.11314 1.39911 1.37153 1.18719 0.94008 0.87347 0.83682 0.93359 1.22058 0.98221 1.00240 0.99827 1.21271 0.95708 1.32725 1.07442 0.92085 1.24891 0.95573 0.95506 0.97787 1.69915 1.17048 1.35290 1.29846 0.86403 0.81413 0.78178 0.81163 1.19751 1.20880 1.20883 1.20963 0.90909 0.98987 1.06314 1.17840 0.88642 0.84936 1.05029 1.86125 1.33976 1.12565 1.89763 1.22700 0.96609 0.81772 1.01053 1.21744 0.98941 0.96587 1.03414 0.91568 0.91784 0.90558 0.92283 0.91819 0.85205 0.86269 0.85349 0.85490 0.77997 0.89227 0.95567 0.96736 0.92664 0.85303 0.92285 0.92475 0.90680 0.91703 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.16 0.38 -1.05 16 2 C 0.05 0.64 5.46 37.16 0.20 0.84 16 3 O -0.31 -4.91 9.91 -33.86 -0.34 -5.25 16 4 C 0.11 1.86 6.71 -38.90 -0.26 1.60 16 5 C -0.18 -3.00 9.01 -39.53 -0.36 -3.36 16 6 C -0.02 -0.34 6.59 -39.12 -0.26 -0.60 16 7 C -0.06 -0.99 4.53 -105.06 -0.48 -1.46 16 8 C -0.04 -0.58 9.80 -37.19 -0.36 -0.94 16 9 C -0.20 -2.87 9.91 -37.52 -0.37 -3.24 16 10 C 0.52 10.23 6.75 -13.04 -0.09 10.14 16 11 O -0.54 -12.42 11.82 5.17 0.06 -12.35 16 12 N -0.70 -14.55 5.06 -56.38 -0.29 -14.83 16 13 C 0.26 6.71 2.56 -69.08 -0.18 6.53 16 14 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 15 C -0.14 -3.57 9.26 37.16 0.34 -3.23 16 16 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -24.98 11.32 55.43 0.63 -24.36 16 20 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 C -0.15 -2.28 8.78 -38.99 -0.34 -2.63 16 25 C 0.08 1.31 6.69 -39.19 -0.26 1.05 16 26 O -0.31 -4.71 9.91 -34.39 -0.34 -5.06 16 27 C 0.05 0.59 5.46 37.16 0.20 0.79 16 28 C -0.15 -1.28 10.28 37.16 0.38 -0.89 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.64 7.65 -51.92 -0.40 0.24 16 33 H 0.06 0.80 7.65 -51.93 -0.40 0.41 16 34 H 0.13 1.91 6.27 -52.48 -0.33 1.58 16 35 H 0.12 2.07 7.03 -52.48 -0.37 1.70 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.39 6.95 8.52 -40.82 -0.35 6.60 16 39 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.13 1.56 6.28 -52.49 -0.33 1.23 16 44 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 45 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -32.84 394.64 -8.63 -41.46 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.44 Total: 7.98 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -1.84 Total: -9.24 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.34 Total: -39.19 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.62 Total: -22.66 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.84 -8.63 -41.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096314607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.363 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds