Wall clock time and date at job start Tue Mar 31 2020 05:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.46997 * 2 1 4 4 C 1.35823 * 116.99810 * 179.97438 * 3 2 1 5 5 C 1.38859 * 119.90702 * 359.97438 * 4 3 2 6 6 C 1.37748 * 120.17499 * 179.73662 * 5 4 3 7 7 C 1.39957 * 119.97338 * 0.55332 * 6 5 4 8 8 C 1.47002 * 120.09216 * 179.72014 * 7 6 5 9 9 C 1.34982 * 120.00002 * 316.07056 * 8 7 6 10 10 C 1.46261 * 120.00158 * 349.03429 * 9 8 7 11 11 O 1.21716 * 119.99643 * 353.21887 * 10 9 8 12 12 N 1.34769 * 119.99965 * 173.22030 * 10 9 8 13 13 C 1.46504 * 119.99910 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46830 * 324.99571 * 13 12 10 15 15 C 1.52997 * 109.47250 * 84.99603 * 13 12 10 16 16 C 1.50703 * 109.47059 * 205.00006 * 13 12 10 17 17 H 1.08000 * 119.99697 * 359.97438 * 16 13 12 18 18 C 1.37872 * 120.00178 * 180.02562 * 16 13 12 19 19 N 1.31521 * 119.99795 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00330 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47278 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47450 * 119.99638 * 20 18 16 23 23 H 1.48499 * 109.47088 * 239.99730 * 20 18 16 24 24 C 1.39956 * 119.81067 * 359.44686 * 7 6 5 25 25 C 1.38094 * 119.82662 * 0.27311 * 24 7 6 26 26 O 1.35991 * 119.98991 * 179.97438 * 25 24 7 27 27 C 1.42898 * 117.00152 * 0.02562 * 26 25 24 28 28 C 1.53004 * 109.47327 * 179.97438 * 27 26 25 29 29 H 1.08997 * 109.47264 * 299.99694 * 1 2 3 30 30 H 1.09005 * 109.47249 * 59.99669 * 1 2 3 31 31 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47162 * 240.00755 * 2 1 3 33 33 H 1.08995 * 109.47126 * 120.00376 * 2 1 3 34 34 H 1.08004 * 119.91214 * 0.02562 * 5 4 3 35 35 H 1.08005 * 120.01367 * 180.29578 * 6 5 4 36 36 H 1.07998 * 119.99951 * 136.07492 * 8 7 6 37 37 H 1.07997 * 119.99873 * 169.04297 * 9 8 7 38 38 H 0.97005 * 120.00362 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.47264 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.47230 * 60.00213 * 15 13 12 41 41 H 1.09001 * 109.47369 * 299.99899 * 15 13 12 42 42 H 0.96997 * 119.99831 * 179.97438 * 19 18 16 43 43 H 1.07993 * 120.08682 * 180.29393 * 24 7 6 44 44 H 1.09001 * 109.46896 * 299.99811 * 27 26 25 45 45 H 1.08993 * 109.47248 * 59.99702 * 27 26 25 46 46 H 1.09006 * 109.47251 * 179.97438 * 28 27 26 47 47 H 1.08992 * 109.46875 * 299.99958 * 28 27 26 48 48 H 1.09006 * 109.46913 * 60.00002 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3528 1.5253 0.0005 5 6 4.1969 0.4227 0.0016 6 6 5.5633 0.5967 -0.0033 7 6 6.1037 1.8877 0.0023 8 6 7.5616 2.0765 0.0033 9 6 8.3389 1.3247 0.8111 10 6 7.7281 0.4983 1.8518 11 8 6.5338 0.5809 2.0716 12 7 8.4876 -0.3547 2.5673 13 6 7.8756 -1.1829 3.6093 14 1 7.0751 -0.6241 4.0942 15 6 7.3014 -2.4535 2.9793 16 6 8.9183 -1.5560 4.6315 17 1 9.9351 -1.2109 4.5161 18 6 8.5743 -2.3385 5.7132 19 7 7.3360 -2.7591 5.8533 20 14 9.8668 -2.8015 6.9798 21 1 11.1723 -2.2074 6.5948 22 1 9.4615 -2.2858 8.3120 23 1 9.9945 -4.2798 7.0391 24 6 5.2522 2.9985 0.0012 25 6 3.8836 2.8147 0.0003 26 8 3.0531 3.8916 -0.0003 27 6 3.6652 5.1829 -0.0004 28 6 2.5802 6.2616 -0.0017 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.7809 -0.5741 0.0016 35 1 6.2174 -0.2627 -0.0073 36 1 8.0107 2.8167 -0.6423 37 1 9.4119 1.3337 0.6892 38 1 9.4393 -0.4208 2.3919 39 1 6.8457 -3.0695 3.7545 40 1 8.1019 -3.0123 2.4945 41 1 6.5472 -2.1836 2.2400 42 1 7.0941 -3.3099 6.6141 43 1 5.6645 3.9966 0.0007 44 1 4.2848 5.2913 0.8898 45 1 4.2854 5.2909 -0.8901 46 1 3.0471 7.2466 -0.0014 47 1 1.9610 6.1530 -0.8920 48 1 1.9596 6.1538 0.8879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096314607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:14 Heat of formation + Delta-G solvation = -87.819740 kcal Electronic energy + Delta-G solvation = -28724.478508 eV Core-core repulsion = 24745.068447 eV Total energy + Delta-G solvation = -3979.410062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58741 -40.55155 -39.57983 -38.13177 -36.59585 -34.36559 -34.26904 -32.80955 -32.35053 -31.25515 -30.79294 -29.10493 -27.34907 -25.57416 -24.98209 -24.01168 -23.23855 -22.04619 -21.75235 -20.64010 -19.61606 -18.77599 -17.97487 -17.73181 -17.30314 -17.11634 -17.01979 -16.69913 -16.02655 -15.97539 -15.54671 -15.12931 -14.95728 -14.72794 -14.44872 -14.37869 -14.15530 -13.91819 -13.63915 -13.55542 -13.39670 -13.31832 -12.99979 -12.93950 -12.84242 -12.82024 -12.65066 -12.54179 -12.28344 -12.13000 -12.06236 -11.87387 -11.75032 -11.59759 -11.08747 -10.66429 -10.52471 -10.35883 -9.77994 -9.42423 -8.41622 -8.18166 -6.35629 -0.16791 0.45587 0.97967 1.42790 1.43763 1.55856 2.24963 2.29043 2.36265 2.56858 2.80360 2.84529 3.12404 3.75916 3.81270 4.00453 4.00897 4.08808 4.12961 4.17019 4.20489 4.28318 4.35896 4.39198 4.45639 4.59593 4.62502 4.75531 4.84472 4.87164 4.90484 4.92078 4.96286 5.00653 5.10452 5.14367 5.22229 5.23417 5.32983 5.40256 5.46110 5.62598 5.70398 5.72937 5.75212 5.96892 6.11548 6.16624 6.66533 6.73716 7.07944 7.33095 7.67035 8.88038 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012621 B = 0.002890 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.018757 B = 9685.757596 C =10744.295226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 O -0.324 6.324 4 C 0.089 3.911 5 C -0.194 4.194 6 C -0.039 4.039 7 C -0.077 4.077 8 C -0.020 4.020 9 C -0.207 4.207 10 C 0.513 3.487 11 O -0.581 6.581 12 N -0.703 5.703 13 C 0.274 3.726 14 H -0.006 1.006 15 C -0.130 4.130 16 C -0.546 4.546 17 H 0.073 0.927 18 C 0.012 3.988 19 N -0.918 5.918 20 Si 0.972 3.028 21 H -0.259 1.259 22 H -0.285 1.285 23 H -0.278 1.278 24 C -0.150 4.150 25 C 0.068 3.932 26 O -0.329 6.329 27 C 0.043 3.957 28 C -0.146 4.146 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.135 0.865 35 H 0.107 0.893 36 H 0.181 0.819 37 H 0.169 0.831 38 H 0.404 0.596 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.012 0.988 42 H 0.264 0.736 43 H 0.161 0.839 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.064 0.936 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 12.655 -16.747 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 O -0.239 6.239 4 C 0.043 3.957 5 C -0.213 4.213 6 C -0.057 4.057 7 C -0.077 4.077 8 C -0.039 4.039 9 C -0.227 4.227 10 C 0.302 3.698 11 O -0.464 6.464 12 N -0.351 5.351 13 C 0.170 3.830 14 H 0.012 0.988 15 C -0.189 4.189 16 C -0.584 4.584 17 H 0.091 0.909 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.796 3.204 21 H -0.183 1.183 22 H -0.211 1.211 23 H -0.204 1.204 24 C -0.169 4.169 25 C 0.023 3.977 26 O -0.245 6.245 27 C -0.032 4.032 28 C -0.203 4.203 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.125 0.875 36 H 0.198 0.802 37 H 0.187 0.813 38 H 0.239 0.761 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.031 0.969 42 H 0.074 0.926 43 H 0.178 0.822 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.122 0.878 47 H 0.083 0.917 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.469 12.726 -16.439 21.497 hybrid contribution 0.914 -0.978 1.186 1.788 sum -4.555 11.748 -15.253 19.785 Atomic orbital electron populations 1.21767 0.90849 1.04156 1.03248 1.23028 0.97357 0.81162 1.01566 1.86050 1.18285 1.30557 1.89010 1.18536 0.83147 0.91732 1.02238 1.20972 0.94191 0.97558 1.08535 1.20819 0.93854 0.96507 0.94555 1.18873 0.94314 0.92257 1.02264 1.22634 0.90269 0.95494 0.95532 1.23245 1.02140 1.00284 0.97053 1.19274 0.86711 0.80360 0.83408 1.90848 1.16466 1.69188 1.69859 1.46288 1.12176 1.40064 1.36563 1.18246 0.92712 0.87240 0.84811 0.98777 1.21859 0.98325 0.99864 0.98838 1.21611 0.96285 1.32616 1.07867 0.90925 1.25815 0.97560 0.95442 0.99918 1.70071 1.19137 1.35943 1.30552 0.85300 0.79114 0.77908 0.78035 1.18268 1.21070 1.20396 1.21280 0.90276 1.00186 1.05125 1.18130 0.89517 0.85240 1.04788 1.86114 1.34951 1.13753 1.89636 1.23067 0.97739 0.80316 1.02082 1.21782 0.98444 0.97152 1.02921 0.92231 0.91170 0.88117 0.91009 0.92961 0.84763 0.87515 0.80151 0.81334 0.76149 0.91801 0.94236 0.96898 0.92648 0.82182 0.92046 0.90451 0.87810 0.91706 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 10.28 71.98 0.74 -2.01 16 2 C 0.04 1.12 5.46 71.98 0.39 1.51 16 3 O -0.32 -10.79 9.91 -77.53 -0.77 -11.56 16 4 C 0.09 3.12 6.71 22.71 0.15 3.27 16 5 C -0.19 -6.73 9.01 22.30 0.20 -6.53 16 6 C -0.04 -1.35 6.59 22.57 0.15 -1.20 16 7 C -0.08 -2.33 4.53 -20.15 -0.09 -2.42 16 8 C -0.02 -0.46 9.80 23.82 0.23 -0.23 16 9 C -0.21 -5.44 9.91 23.61 0.23 -5.21 16 10 C 0.51 20.09 6.75 86.33 0.58 20.67 16 11 O -0.58 -27.58 11.82 -4.40 -0.05 -27.63 16 12 N -0.70 -29.07 5.06 -450.49 -2.28 -31.35 16 13 C 0.27 14.31 2.56 44.24 0.11 14.43 16 14 H -0.01 -0.36 7.58 -2.39 -0.02 -0.37 16 15 C -0.13 -6.64 9.26 71.98 0.67 -5.98 16 16 C -0.55 -29.14 8.73 25.60 0.22 -28.92 16 17 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 18 C 0.01 0.67 5.30 84.65 0.45 1.12 16 19 N -0.92 -53.41 11.32 21.45 0.24 -53.16 16 20 Si 0.97 42.35 29.54 68.60 2.03 44.38 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 24 C -0.15 -4.27 8.78 22.65 0.20 -4.08 16 25 C 0.07 2.24 6.69 22.53 0.15 2.39 16 26 O -0.33 -9.95 9.91 -79.41 -0.79 -10.74 16 27 C 0.04 0.85 5.46 71.98 0.39 1.25 16 28 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.61 7.65 -2.38 -0.02 1.59 16 33 H 0.05 1.42 7.65 -2.39 -0.02 1.41 16 34 H 0.13 4.28 6.27 -2.91 -0.02 4.26 16 35 H 0.11 3.88 7.03 -2.91 -0.02 3.86 16 36 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.40 13.92 8.52 -92.70 -0.79 13.13 16 39 H 0.06 3.59 6.07 -2.39 -0.01 3.58 16 40 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 43 H 0.16 3.38 6.28 -2.91 -0.02 3.36 16 44 H 0.06 1.19 7.66 -2.39 -0.02 1.17 16 45 H 0.08 1.23 7.66 -2.39 -0.02 1.21 16 46 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -75.37 394.64 4.08 -71.28 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.17 Total: 32.21 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 5.53 Total: -13.43 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.04 Total: -84.51 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -1.61 Total: -49.93 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -75.37 4.08 -71.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096314607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.536 kcal (2) G-P(sol) polarization free energy of solvation -75.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds