Wall clock time and date at job start Tue Mar 31 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36936 * 120.00065 * 2 1 4 4 H 1.08004 * 120.00124 * 202.37559 * 3 2 1 5 5 C 1.38817 * 119.99838 * 22.37311 * 3 2 1 6 6 N 1.31617 * 120.00071 * 11.34248 * 5 3 2 7 7 Si 1.86798 * 119.99874 * 191.33483 * 5 3 2 8 8 H 1.48499 * 109.47182 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47264 * 120.00478 * 7 5 3 10 10 H 1.48506 * 109.47170 * 240.00205 * 7 5 3 11 11 C 1.46493 * 119.99839 * 180.02562 * 2 1 3 12 12 C 1.50697 * 109.47097 * 269.99654 * 11 2 1 13 13 C 1.38284 * 119.94426 * 90.00154 * 12 11 2 14 14 C 1.38140 * 120.07431 * 180.30040 * 13 12 11 15 15 C 1.38712 * 119.95725 * 359.44860 * 14 13 12 16 16 O 1.35922 * 120.06515 * 180.27739 * 15 14 13 17 17 C 1.42901 * 116.99506 * 0.27256 * 16 15 14 18 18 F 1.39906 * 109.47219 * 299.99909 * 17 16 15 19 19 F 1.39895 * 109.47212 * 59.99749 * 17 16 15 20 20 C 1.38797 * 119.88120 * 0.55021 * 15 14 13 21 21 Br 1.89093 * 120.03962 * 179.70488 * 20 15 14 22 22 C 1.38243 * 119.92647 * 359.72326 * 20 15 14 23 23 H 1.08996 * 109.46621 * 274.20537 * 1 2 3 24 24 H 1.08999 * 109.46991 * 34.19959 * 1 2 3 25 25 H 1.08998 * 109.46981 * 154.20078 * 1 2 3 26 26 H 0.96996 * 120.00057 * 180.02562 * 6 5 3 27 27 H 1.09005 * 109.47064 * 150.00197 * 11 2 1 28 28 H 1.08999 * 109.47766 * 29.99932 * 11 2 1 29 29 H 1.08005 * 119.95902 * 0.02562 * 13 12 11 30 30 H 1.08003 * 120.01891 * 179.70016 * 14 13 12 31 31 H 1.08999 * 109.46833 * 180.02562 * 17 16 15 32 32 H 1.07996 * 119.97856 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1688 1.2211 -0.3561 5 6 1.5340 2.3428 0.4576 6 7 0.3846 2.2688 1.0945 7 14 2.3369 4.0047 0.1696 8 1 3.6139 3.8169 -0.5648 9 1 1.4269 4.8619 -0.6319 10 1 2.6080 4.6566 1.4761 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7043 1.4200 13 6 1.5261 -2.5030 2.0705 14 6 1.7507 -2.8987 3.3748 15 6 2.9085 -2.5040 4.0288 16 8 3.1344 -2.8968 5.3103 17 6 2.1395 -3.7209 5.9210 18 9 0.9191 -3.0372 5.9470 19 9 1.9965 -4.9022 5.1853 20 6 3.8334 -1.7024 3.3742 21 35 5.4092 -1.1547 4.2644 22 6 3.6010 -1.3044 2.0709 23 1 -0.3632 0.0754 1.0249 24 1 -0.3633 0.8500 -0.5776 25 1 -0.3633 -0.9252 -0.4473 26 1 -0.0458 3.0772 1.4139 27 1 3.1500 -1.1381 -0.5143 28 1 1.6085 -2.0282 -0.5147 29 1 0.6267 -2.8140 1.5597 30 1 1.0272 -3.5185 3.8836 31 1 2.4425 -3.9615 6.9400 32 1 4.3203 -0.6810 1.5606 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097033849.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:38 Heat of formation + Delta-G solvation = -89.912500 kcal Electronic energy + Delta-G solvation = -21091.346339 eV Core-core repulsion = 17349.086715 eV Total energy + Delta-G solvation = -3742.259624 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 335.007 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.39165 -47.38156 -39.81097 -37.62687 -35.33160 -32.23748 -31.55252 -29.98602 -28.89604 -26.73792 -25.96052 -24.98397 -22.51389 -21.89352 -20.38749 -18.91667 -18.07988 -17.95151 -16.75831 -16.03369 -15.42107 -14.89543 -14.70857 -14.55296 -14.01175 -13.75314 -13.70445 -13.59495 -13.39187 -13.09598 -12.91155 -12.55702 -12.07084 -11.85285 -11.39362 -11.03195 -10.89989 -10.77863 -10.65228 -10.48257 -10.28174 -10.03298 -9.93170 -9.89233 -8.61389 -8.47045 -7.94479 -6.84555 -5.78784 -3.22864 1.47094 1.63624 1.93478 2.56533 3.35872 3.40316 3.43223 3.44970 3.93840 4.22210 4.47903 4.58077 5.00749 5.10179 5.34988 5.55088 5.65066 5.70906 5.74509 5.90057 6.27720 6.32355 6.50495 6.58206 6.70593 6.77434 7.08821 7.25362 7.33701 7.68536 7.76628 8.32517 9.16476 9.78375 10.26752 11.25674 Molecular weight = 335.01amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.005029 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.084210 B = 5565.951676 C = 6711.981928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.589 5.589 3 C -0.255 4.255 4 H 0.072 0.928 5 C 0.005 3.995 6 N -0.902 5.902 7 Si 0.904 3.096 8 H -0.276 1.276 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.181 3.819 12 C -0.093 4.093 13 C -0.064 4.064 14 C -0.184 4.184 15 C 0.105 3.895 16 O -0.314 6.314 17 C 0.411 3.589 18 F -0.198 7.198 19 F -0.201 7.201 20 C -0.102 4.102 21 Br -0.053 7.053 22 C -0.043 4.043 23 H 0.029 0.971 24 H 0.048 0.952 25 H -0.002 1.002 26 H 0.253 0.747 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.178 0.822 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.879 -13.011 8.430 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.309 5.309 3 C -0.384 4.384 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.546 5.546 7 Si 0.734 3.266 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.216 1.216 11 C 0.054 3.946 12 C -0.098 4.098 13 C -0.083 4.083 14 C -0.204 4.204 15 C 0.060 3.940 16 O -0.232 6.232 17 C 0.321 3.679 18 F -0.180 7.180 19 F -0.183 7.183 20 C -0.182 4.182 21 Br 0.032 6.968 22 C -0.064 4.064 23 H 0.047 0.953 24 H 0.067 0.933 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.195 0.805 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.450 -12.591 8.874 16.699 hybrid contribution -0.432 0.831 0.022 0.937 sum 6.017 -11.760 8.895 15.926 Atomic orbital electron populations 1.20856 0.82166 0.95803 0.99461 1.44183 1.02053 1.00281 1.84401 1.19280 0.98365 0.84971 1.35829 0.91058 1.25083 0.97617 0.98723 0.98002 1.70075 1.17658 1.27184 1.39634 0.86185 0.78771 0.84115 0.77528 1.20130 1.21538 1.21603 1.19998 0.96940 0.88795 0.88862 1.21283 0.92463 0.94373 1.01713 1.20910 0.98521 0.95699 0.93201 1.21340 0.96673 1.05190 0.97164 1.18241 0.95018 0.97802 0.82916 1.86652 1.44986 1.65042 1.26479 1.23303 0.75849 0.74409 0.94353 1.93115 1.47504 1.80255 1.97083 1.93085 1.95517 1.49006 1.80674 1.20947 0.94858 1.06009 0.96360 1.96595 1.31496 1.90358 1.78351 1.20852 0.97805 0.96728 0.91007 0.95264 0.93334 0.98324 0.93651 0.92457 0.92984 0.85575 0.85070 0.80529 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 9.01 59.85 0.54 4.42 16 2 N -0.59 -14.27 2.91 -182.50 -0.53 -14.81 16 3 C -0.25 -6.78 9.67 -15.06 -0.15 -6.92 16 4 H 0.07 1.85 7.84 -52.48 -0.41 1.43 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.90 -26.03 10.59 55.49 0.59 -25.45 16 7 Si 0.90 21.68 29.57 -169.99 -5.03 16.66 16 8 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 11 C 0.18 3.56 5.83 -5.20 -0.03 3.53 16 12 C -0.09 -1.77 5.46 -104.60 -0.57 -2.34 16 13 C -0.06 -1.13 9.69 -39.60 -0.38 -1.51 16 14 C -0.18 -3.10 8.26 -39.44 -0.33 -3.43 16 15 C 0.11 1.81 6.47 -39.20 -0.25 1.55 16 16 O -0.31 -4.57 9.77 -19.49 -0.19 -4.76 16 17 C 0.41 4.45 5.98 101.05 0.60 5.06 16 18 F -0.20 -2.59 15.57 2.25 0.04 -2.55 16 19 F -0.20 -2.37 15.60 2.25 0.04 -2.34 16 20 C -0.10 -1.83 6.24 -39.37 -0.25 -2.08 16 21 Br -0.05 -0.84 33.16 -68.01 -2.26 -3.09 16 22 C -0.04 -0.81 9.44 -39.58 -0.37 -1.19 16 23 H 0.03 0.77 7.42 -51.93 -0.39 0.38 16 24 H 0.05 1.26 7.19 -51.93 -0.37 0.88 16 25 H 0.00 -0.04 7.84 -51.93 -0.41 -0.44 16 26 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.06 1.07 7.97 -51.93 -0.41 0.66 16 28 H 0.05 0.90 7.81 -51.93 -0.41 0.50 16 29 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 30 H 0.13 2.00 5.10 -52.48 -0.27 1.74 16 31 H 0.18 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.14 2.54 8.06 -52.49 -0.42 2.11 16 LS Contribution 303.40 15.07 4.57 4.57 Total: -1.00 -30.59 303.40 -7.12 -37.70 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -3.07 Total: -3.07 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -1.28 Total: -2.87 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.06 Total: -40.25 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.19 Total: -4.76 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 0.07 Total: -4.89 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Atomic # 35 Polarization: -0.84 SS G_CDS: -2.26 Total: -3.09 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.59 -7.12 -37.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097033849.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.211 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds