Wall clock time and date at job start Tue Mar 31 2020 05:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47286 * 2 1 4 4 H 1.08998 * 109.47263 * 54.99266 * 3 2 1 5 5 C 1.50700 * 109.47416 * 174.99859 * 3 2 1 6 6 H 1.08004 * 119.99812 * 119.99420 * 5 3 2 7 7 C 1.37872 * 119.99815 * 299.99978 * 5 3 2 8 8 N 1.31513 * 120.00108 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99867 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46905 * 59.99902 * 9 7 5 11 11 H 1.48499 * 109.47021 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47234 * 300.00159 * 9 7 5 13 13 N 1.46502 * 109.46761 * 294.99802 * 3 2 1 14 14 C 1.34776 * 120.00104 * 85.00260 * 13 3 2 15 15 O 1.21587 * 120.00261 * 359.97438 * 14 13 3 16 16 N 1.34776 * 120.00278 * 179.72671 * 14 13 3 17 17 C 1.39935 * 120.00138 * 174.79410 * 16 14 13 18 18 C 1.38940 * 120.03346 * 326.74234 * 17 16 14 19 19 C 1.38149 * 120.08059 * 179.97438 * 18 17 16 20 20 C 1.38161 * 120.14283 * 0.02562 * 19 18 17 21 21 C 1.38946 * 120.06596 * 359.97438 * 20 19 18 22 22 N 1.39679 * 120.04040 * 180.02562 * 21 20 19 23 23 C 1.47014 * 110.99729 * 123.63246 * 22 21 20 24 24 C 1.53097 * 109.25514 * 177.60747 * 23 22 21 25 25 O 1.43017 * 109.26238 * 56.84968 * 24 23 22 26 26 C 1.43017 * 113.73656 * 301.33490 * 25 24 23 27 27 C 1.47015 * 110.99935 * 0.02562 * 22 21 20 28 28 C 1.38711 * 120.03326 * 146.47373 * 17 16 14 29 29 H 1.08994 * 109.47113 * 60.00270 * 1 2 3 30 30 H 1.09002 * 109.47252 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47110 * 300.00168 * 1 2 3 32 32 H 1.08996 * 109.47187 * 239.99320 * 2 1 3 33 33 H 1.09005 * 109.46774 * 119.99477 * 2 1 3 34 34 H 0.97002 * 119.99948 * 180.02562 * 8 7 5 35 35 H 0.96993 * 120.00159 * 264.99868 * 13 3 2 36 36 H 0.96996 * 119.99562 * 354.78634 * 16 14 13 37 37 H 1.08006 * 119.96025 * 0.02562 * 18 17 16 38 38 H 1.08006 * 119.92683 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.96846 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.50950 * 297.54426 * 23 22 21 41 41 H 1.09001 * 109.50613 * 57.67243 * 23 22 21 42 42 H 1.09002 * 109.50869 * 296.91128 * 24 23 22 43 43 H 1.09004 * 109.54190 * 176.80531 * 24 23 22 44 44 H 1.09007 * 109.50353 * 298.73138 * 26 25 24 45 45 H 1.09001 * 109.53821 * 178.62456 * 26 25 24 46 46 H 1.09002 * 109.50127 * 302.32802 * 27 22 21 47 47 H 1.09000 * 109.50944 * 62.41089 * 27 22 21 48 48 H 1.07999 * 120.07444 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3375 2.1733 9 14 6.0050 0.8801 1.3812 10 1 6.5004 2.2800 1.3808 11 1 6.3977 0.2168 2.6505 12 1 6.5967 0.1453 0.2344 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3671 15 8 -0.3415 2.6319 -0.4322 16 7 0.0807 3.2717 -2.5168 17 6 -1.2194 3.7642 -2.6760 18 6 -2.2892 3.1091 -2.0787 19 6 -3.5730 3.5948 -2.2348 20 6 -3.7978 4.7327 -2.9854 21 6 -2.7324 5.3926 -3.5853 22 7 -2.9602 6.5434 -4.3436 23 6 -2.1718 7.6747 -3.8339 24 6 -2.4051 8.8959 -4.7274 25 8 -3.8045 9.1875 -4.7718 26 6 -4.6024 8.1074 -5.2638 27 6 -4.3913 6.8786 -4.3753 28 6 -1.4407 4.9101 -3.4257 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0602 2.9503 35 1 2.2719 2.1230 -1.9978 36 1 0.7268 3.3674 -3.2339 37 1 -2.1168 2.2195 -1.4910 38 1 -4.4029 3.0833 -1.7697 39 1 -4.8027 5.1098 -3.1059 40 1 -2.4821 7.9048 -2.8147 41 1 -1.1135 7.4141 -3.8428 42 1 -2.0453 8.6842 -5.7343 43 1 -1.8675 9.7528 -4.3214 44 1 -4.3065 7.8728 -6.2864 45 1 -5.6541 8.3933 -5.2457 46 1 -4.9534 6.0367 -4.7795 47 1 -4.7369 7.0954 -3.3646 48 1 -0.6104 5.4234 -3.8877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097096708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:22 Heat of formation + Delta-G solvation = -53.251349 kcal Electronic energy + Delta-G solvation = -28682.900009 eV Core-core repulsion = 24737.281696 eV Total energy + Delta-G solvation = -3945.618313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82527 -41.07865 -39.40671 -37.47214 -36.49474 -35.32188 -34.26643 -32.82797 -32.40766 -31.31946 -30.19103 -28.72806 -27.55475 -25.54882 -25.01556 -23.62836 -22.98744 -22.27733 -21.40567 -21.08176 -19.74626 -19.08251 -18.05791 -17.41790 -17.18348 -17.09950 -16.71505 -16.54654 -16.32476 -16.04832 -15.91416 -15.70452 -15.26454 -15.18798 -14.81278 -14.60413 -14.50406 -14.02765 -13.69728 -13.50494 -13.29035 -13.16353 -12.91357 -12.80429 -12.77188 -12.65280 -12.39085 -12.20790 -12.13338 -12.03579 -11.61765 -11.58406 -11.37212 -11.09189 -11.04002 -10.85634 -10.52410 -10.39906 -9.72549 -9.21109 -8.74973 -8.15549 -6.32674 0.36666 0.42249 1.45431 1.47224 1.54781 1.76608 2.21258 2.42462 2.55628 2.90520 2.96982 3.14020 3.47485 3.80624 3.85123 3.96050 4.11972 4.13862 4.24158 4.25705 4.33798 4.49203 4.51197 4.55096 4.57135 4.59439 4.69610 4.70678 4.76876 4.78100 4.91785 4.97052 5.06528 5.16787 5.23378 5.37061 5.38662 5.46162 5.52665 5.58215 5.63067 5.77104 5.79995 5.88300 5.95458 6.14238 6.17346 6.25927 6.30890 6.75047 7.25542 7.35728 7.72337 8.89724 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.002312 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.915636 B =12105.440536 C =13062.265621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.715 5.715 14 C 0.693 3.307 15 O -0.610 6.610 16 N -0.680 5.680 17 C 0.187 3.813 18 C -0.169 4.169 19 C -0.077 4.077 20 C -0.189 4.189 21 C 0.123 3.877 22 N -0.488 5.488 23 C 0.018 3.982 24 C 0.065 3.935 25 O -0.404 6.404 26 C 0.062 3.938 27 C 0.011 3.989 28 C -0.171 4.171 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.025 0.975 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.265 0.735 35 H 0.401 0.599 36 H 0.419 0.581 37 H 0.108 0.892 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.041 0.959 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.117 0.883 44 H 0.066 0.934 45 H 0.121 0.879 46 H 0.106 0.894 47 H 0.052 0.948 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.378 13.330 -17.696 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.367 5.367 14 C 0.394 3.606 15 O -0.490 6.490 16 N -0.328 5.328 17 C 0.091 3.909 18 C -0.191 4.191 19 C -0.096 4.096 20 C -0.211 4.211 21 C 0.025 3.975 22 N -0.204 5.204 23 C -0.107 4.107 24 C -0.012 4.012 25 O -0.323 6.323 26 C -0.014 4.014 27 C -0.116 4.116 28 C -0.194 4.194 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.257 0.743 37 H 0.126 0.874 38 H 0.158 0.842 39 H 0.166 0.834 40 H 0.059 0.941 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.134 0.866 44 H 0.084 0.916 45 H 0.139 0.861 46 H 0.125 0.875 47 H 0.070 0.930 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.892 13.306 -17.095 25.735 hybrid contribution 1.465 -0.547 0.719 1.722 sum -12.426 12.759 -16.376 24.194 Atomic orbital electron populations 1.21644 0.97012 0.98909 1.00178 1.21804 0.93739 0.99231 1.01270 1.18267 0.93451 0.88807 0.80156 0.98315 1.21532 0.91318 1.39048 1.06751 0.90983 1.25751 1.03258 0.94392 0.95020 1.70041 1.37116 1.38262 1.09814 0.85428 0.79139 0.78398 0.77536 1.19731 1.21277 1.18910 1.45455 1.14213 1.58517 1.18551 1.16159 0.83040 0.78710 0.82707 1.90895 1.52877 1.65496 1.39717 1.42559 1.12322 1.60857 1.17111 1.17465 0.83322 0.92771 0.97366 1.21164 0.92690 1.01823 1.03385 1.21056 0.95998 0.95743 0.96780 1.21423 0.99671 0.98848 1.01121 1.18683 0.93116 0.93233 0.92460 1.59369 1.09416 1.02764 1.48889 1.22999 0.99563 0.90533 0.97639 1.22805 0.82053 0.96700 0.99658 1.87983 1.18550 1.39347 1.86375 1.22860 0.96995 0.84969 0.96622 1.23086 0.87308 1.00379 1.00851 1.20454 0.97137 0.95970 1.05841 0.93949 0.93803 0.95548 0.94116 0.90908 0.92581 0.76381 0.74326 0.87351 0.84223 0.83408 0.94068 0.88347 0.91291 0.86556 0.91565 0.86091 0.87541 0.92980 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.51 71.98 0.61 -4.83 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.79 16 3 C 0.30 15.08 2.24 44.24 0.10 15.18 16 4 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 5 C -0.55 -28.57 8.73 25.60 0.22 -28.35 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.86 5.29 84.65 0.45 1.30 16 8 N -0.91 -51.93 11.29 21.45 0.24 -51.69 16 9 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 13 N -0.71 -29.08 5.03 -461.41 -2.32 -31.40 16 14 C 0.69 27.65 6.87 179.05 1.23 28.88 16 15 O -0.61 -29.22 11.16 -3.99 -0.04 -29.27 16 16 N -0.68 -20.45 5.35 -317.25 -1.70 -22.15 16 17 C 0.19 5.57 6.28 38.13 0.24 5.81 16 18 C -0.17 -5.43 8.65 22.42 0.19 -5.24 16 19 C -0.08 -1.95 10.03 22.23 0.22 -1.73 16 20 C -0.19 -4.09 8.81 22.42 0.20 -3.90 16 21 C 0.12 2.72 5.64 38.20 0.22 2.93 16 22 N -0.49 -8.72 4.77 -694.37 -3.31 -12.03 16 23 C 0.02 0.30 5.40 86.31 0.47 0.77 16 24 C 0.06 0.86 7.01 72.01 0.50 1.37 16 25 O -0.40 -6.65 10.83 -148.98 -1.61 -8.26 16 26 C 0.06 0.74 7.01 72.01 0.50 1.25 16 27 C 0.01 0.15 4.33 86.31 0.37 0.52 16 28 C -0.17 -4.13 9.11 22.52 0.21 -3.92 16 29 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.03 1.28 7.84 -2.38 -0.02 1.26 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 4.00 5.95 -2.38 -0.01 3.98 16 34 H 0.27 14.33 8.31 -92.71 -0.77 13.55 16 35 H 0.40 13.59 8.56 -92.71 -0.79 12.80 16 36 H 0.42 9.40 8.83 -92.71 -0.82 8.58 16 37 H 0.11 4.14 6.41 -2.91 -0.02 4.12 16 38 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.15 2.38 5.80 -2.91 -0.02 2.36 16 40 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 41 H 0.10 1.49 6.84 -2.39 -0.02 1.48 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 43 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 44 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.11 1.21 7.22 -2.39 -0.02 1.19 16 47 H 0.05 0.79 7.53 -2.39 -0.02 0.77 16 48 H 0.14 2.83 7.18 -2.91 -0.02 2.81 16 Total: -1.00 -68.77 375.15 -1.43 -70.21 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.62 Total: 36.68 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 5.90 Total: 4.26 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -7.09 Total: -117.26 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -1.66 Total: -37.53 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -68.77 -1.43 -70.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.955 kcal (2) G-P(sol) polarization free energy of solvation -68.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds