Wall clock time and date at job start Tue Mar 31 2020 05:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47029 * 2 1 4 4 H 1.08991 * 109.47280 * 305.00034 * 3 2 1 5 5 C 1.50705 * 109.46927 * 184.99921 * 3 2 1 6 6 H 1.08004 * 120.00072 * 239.99973 * 5 3 2 7 7 C 1.37881 * 119.99839 * 60.00111 * 5 3 2 8 8 N 1.31514 * 119.99904 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99784 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46930 * 60.00363 * 9 7 5 11 11 H 1.48504 * 109.47073 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47335 * 300.00229 * 9 7 5 13 13 N 1.46499 * 109.47231 * 65.00530 * 3 2 1 14 14 C 1.34780 * 119.99791 * 275.00058 * 13 3 2 15 15 O 1.21591 * 119.99953 * 359.97438 * 14 13 3 16 16 N 1.34775 * 120.00251 * 180.02562 * 14 13 3 17 17 C 1.39936 * 120.00243 * 184.61035 * 16 14 13 18 18 C 1.38941 * 120.03525 * 144.89509 * 17 16 14 19 19 C 1.38138 * 120.08372 * 180.02562 * 18 17 16 20 20 C 1.38173 * 120.14317 * 0.02562 * 19 18 17 21 21 C 1.38946 * 120.05976 * 0.02562 * 20 19 18 22 22 N 1.39672 * 120.03494 * 179.72524 * 21 20 19 23 23 C 1.47011 * 111.00402 * 123.63373 * 22 21 20 24 24 C 1.53094 * 109.26183 * 177.60333 * 23 22 21 25 25 O 1.43020 * 109.25792 * 56.84600 * 24 23 22 26 26 C 1.43019 * 113.73718 * 301.33231 * 25 24 23 27 27 C 1.47010 * 111.00485 * 359.97438 * 22 21 20 28 28 C 1.38712 * 120.03397 * 324.92252 * 17 16 14 29 29 H 1.08998 * 109.47180 * 60.00168 * 1 2 3 30 30 H 1.09006 * 109.46992 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46948 * 299.99893 * 1 2 3 32 32 H 1.09000 * 109.46948 * 240.00107 * 2 1 3 33 33 H 1.09004 * 109.47293 * 120.00554 * 2 1 3 34 34 H 0.96999 * 120.00123 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00567 * 94.99533 * 13 3 2 36 36 H 0.97004 * 119.99460 * 4.60831 * 16 14 13 37 37 H 1.08009 * 119.95900 * 0.04478 * 18 17 16 38 38 H 1.08004 * 119.93528 * 179.97438 * 19 18 17 39 39 H 1.08000 * 119.96926 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.50258 * 297.54225 * 23 22 21 41 41 H 1.08998 * 109.50496 * 57.66644 * 23 22 21 42 42 H 1.09003 * 109.50485 * 296.91236 * 24 23 22 43 43 H 1.08995 * 109.54279 * 176.80228 * 24 23 22 44 44 H 1.09004 * 109.50235 * 298.73538 * 26 25 24 45 45 H 1.08994 * 109.53726 * 178.62941 * 26 25 24 46 46 H 1.09001 * 109.51223 * 302.33444 * 27 22 21 47 47 H 1.09007 * 109.50046 * 62.41700 * 27 22 21 48 48 H 1.08003 * 120.06819 * 359.97393 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8812 -1.3818 10 1 6.5975 0.1471 -0.2349 11 1 6.3978 0.2166 -2.6504 12 1 6.4995 2.2813 -1.3821 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3671 15 8 -0.3412 2.6325 0.4319 16 7 0.0788 3.2673 2.5185 17 6 -1.2177 3.7708 2.6726 18 6 -1.8422 3.7160 3.9126 19 6 -3.1222 4.2121 4.0657 20 6 -3.7862 4.7640 2.9869 21 6 -3.1677 4.8209 1.7440 22 7 -3.8415 5.3736 0.6525 23 6 -3.0678 6.4729 0.0573 24 6 -3.8125 7.0088 -1.1683 25 8 -5.1261 7.4197 -0.7796 26 6 -5.9077 6.3734 -0.1966 27 6 -5.1843 5.8307 1.0386 28 6 -1.8810 4.3245 1.5875 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8292 -0.0612 -2.9498 35 1 2.2720 2.1231 1.9978 36 1 0.7212 3.3523 3.2404 37 1 -1.3260 3.2851 4.7579 38 1 -3.6056 4.1679 5.0306 39 1 -4.7871 5.1507 3.1098 40 1 -2.9487 7.2719 0.7891 41 1 -2.0869 6.1058 -0.2446 42 1 -3.8845 6.2247 -1.9220 43 1 -3.2715 7.8608 -1.5798 44 1 -6.0406 5.5709 -0.9222 45 1 -6.8820 6.7655 0.0950 46 1 -5.7482 4.9950 1.4530 47 1 -5.0993 6.6190 1.7868 48 1 -1.3977 4.3683 0.6227 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:26 Heat of formation + Delta-G solvation = -30.732634 kcal Electronic energy + Delta-G solvation = -29120.928513 eV Core-core repulsion = 25176.286685 eV Total energy + Delta-G solvation = -3944.641828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.71553 -39.78946 -38.31602 -36.15468 -35.10985 -33.86645 -32.43743 -31.69494 -30.90095 -30.27365 -29.00153 -26.84819 -26.69037 -24.64495 -23.18930 -22.27394 -22.10146 -20.78553 -20.20059 -19.51411 -18.21258 -17.95615 -16.45569 -16.35737 -16.05525 -15.88329 -15.58122 -15.27473 -15.03705 -14.94465 -14.78679 -14.39140 -14.12220 -13.83783 -13.58071 -13.19653 -12.84770 -12.66942 -12.45134 -12.13981 -11.98634 -11.75587 -11.57494 -11.47532 -11.28744 -11.24151 -10.99868 -10.84869 -10.84492 -10.38581 -10.27573 -10.18614 -9.92973 -9.59305 -9.53839 -9.26817 -9.04979 -8.51996 -8.11183 -7.88108 -7.67927 -6.14019 -4.23656 1.40418 1.53643 3.15824 3.23992 3.29750 3.31414 3.42116 3.62324 3.71875 4.08570 4.30700 4.59856 4.68427 4.76442 4.89104 4.96784 5.03889 5.05118 5.15941 5.17640 5.26744 5.31720 5.38948 5.49034 5.53877 5.60491 5.71096 5.74004 5.91496 6.23986 6.41916 6.42884 6.46481 6.49114 6.53274 6.68228 6.82410 6.88896 7.02116 7.04588 7.14017 7.34452 7.37160 7.38182 7.45871 7.62787 7.85740 7.97551 8.17640 8.71735 8.83354 9.24478 9.44943 10.91213 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.002787 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.688621 B =10045.866278 C =10994.889125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.288 3.712 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.719 5.719 14 C 0.691 3.309 15 O -0.572 6.572 16 N -0.698 5.698 17 C 0.204 3.796 18 C -0.179 4.179 19 C -0.077 4.077 20 C -0.197 4.197 21 C 0.124 3.876 22 N -0.485 5.485 23 C 0.021 3.979 24 C 0.062 3.938 25 O -0.386 6.386 26 C 0.062 3.938 27 C 0.015 3.985 28 C -0.138 4.138 29 H 0.049 0.951 30 H 0.021 0.979 31 H 0.038 0.962 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.265 0.735 35 H 0.385 0.615 36 H 0.402 0.598 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.051 0.949 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.054 0.946 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.211 10.931 10.254 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.370 5.370 14 C 0.392 3.608 15 O -0.449 6.449 16 N -0.345 5.345 17 C 0.106 3.894 18 C -0.201 4.201 19 C -0.097 4.097 20 C -0.219 4.219 21 C 0.026 3.974 22 N -0.200 5.200 23 C -0.105 4.105 24 C -0.015 4.015 25 O -0.305 6.305 26 C -0.015 4.015 27 C -0.112 4.112 28 C -0.161 4.161 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.217 0.783 36 H 0.237 0.763 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.118 0.882 46 H 0.111 0.889 47 H 0.072 0.928 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.945 10.578 8.649 20.250 hybrid contribution 1.812 0.020 1.309 2.235 sum -13.133 10.598 9.958 19.595 Atomic orbital electron populations 1.21810 0.98210 0.97901 1.01310 1.21958 0.92716 0.99857 1.02195 1.18707 0.93937 0.88892 0.79895 0.93229 1.21185 0.90659 1.39241 1.06339 0.92176 1.24873 0.98590 0.94779 0.95367 1.69884 1.35228 1.37401 1.09316 0.86510 0.84828 0.78293 0.77467 1.20190 1.21111 1.20202 1.45846 1.13248 1.58555 1.19316 1.16136 0.83679 0.78747 0.82270 1.90906 1.51652 1.64516 1.37839 1.42885 1.11973 1.61363 1.18324 1.17328 0.84764 0.93508 0.93773 1.20802 0.96101 1.06409 0.96808 1.20651 0.93832 0.97069 0.98114 1.21134 1.01447 1.07289 0.92011 1.18711 0.92975 0.97325 0.88398 1.59232 1.02969 1.30242 1.27606 1.22929 0.98416 0.91847 0.97271 1.22736 0.83014 1.00482 0.95282 1.87979 1.25904 1.35993 1.80595 1.22706 0.94192 0.90832 0.93792 1.22953 0.89999 1.00215 0.98057 1.20977 0.94548 1.00216 1.00343 0.93142 0.96030 0.94295 0.88275 0.95134 0.92459 0.78274 0.76317 0.86088 0.86034 0.86048 0.93068 0.88482 0.91747 0.87947 0.92003 0.88188 0.88925 0.92821 0.83436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.29 7.09 2.24 -69.08 -0.15 6.94 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.54 -13.86 8.73 -34.44 -0.30 -14.16 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.76 16 9 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.72 -14.47 5.03 -59.81 -0.30 -14.77 16 14 C 0.69 13.53 6.97 -86.92 -0.61 12.93 16 15 O -0.57 -13.14 10.91 5.29 0.06 -13.09 16 16 N -0.70 -10.56 5.34 -14.24 -0.08 -10.63 16 17 C 0.20 3.06 6.30 -83.72 -0.53 2.53 16 18 C -0.18 -2.21 9.96 -39.36 -0.39 -2.61 16 19 C -0.08 -0.86 10.03 -39.64 -0.40 -1.26 16 20 C -0.20 -2.34 8.81 -39.34 -0.35 -2.69 16 21 C 0.12 1.73 5.63 -83.82 -0.47 1.26 16 22 N -0.48 -6.20 4.77 -170.84 -0.81 -7.01 16 23 C 0.02 0.25 5.41 -3.71 -0.02 0.23 16 24 C 0.06 0.64 7.01 37.21 0.26 0.90 16 25 O -0.39 -4.30 10.83 -35.23 -0.38 -4.68 16 26 C 0.06 0.57 7.01 37.20 0.26 0.83 16 27 C 0.02 0.15 4.33 -3.72 -0.02 0.13 16 28 C -0.14 -2.23 7.85 -39.20 -0.31 -2.54 16 29 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.88 5.64 -51.93 -0.29 0.58 16 32 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.39 6.65 8.56 -40.82 -0.35 6.30 16 36 H 0.40 4.69 8.84 -40.82 -0.36 4.33 16 37 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 39 H 0.12 1.17 5.80 -52.49 -0.30 0.87 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 1.22 6.86 -51.93 -0.36 0.86 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.83 7.23 -51.93 -0.38 0.45 16 47 H 0.05 0.51 7.53 -51.92 -0.39 0.12 16 48 H 0.15 2.77 5.36 -52.48 -0.28 2.49 16 LS Contribution 374.91 15.07 5.65 5.65 Total: -1.00 -31.10 374.91 -10.37 -41.47 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -7.17 Total: 13.35 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.94 Total: -1.83 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.57 Total: -56.17 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.32 Total: -17.77 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.10 -10.37 -41.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.735 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds