Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46836 * 2 1 4 4 C 1.53005 * 109.47167 * 239.99840 * 2 1 3 5 5 C 1.52993 * 117.49976 * 65.00003 * 4 2 1 6 6 C 1.52992 * 60.03398 * 252.49903 * 5 4 2 7 7 N 1.46499 * 109.47023 * 119.99966 * 2 1 3 8 8 C 1.46495 * 120.00129 * 54.09798 * 7 2 1 9 9 C 1.50702 * 109.46975 * 74.85520 * 8 7 2 10 10 H 1.07998 * 120.00017 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00071 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00161 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99758 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47499 * 90.00157 * 13 11 9 15 15 H 1.48507 * 109.46664 * 209.99987 * 13 11 9 16 16 H 1.48499 * 109.47302 * 329.99807 * 13 11 9 17 17 C 1.34779 * 119.99824 * 234.10611 * 7 2 1 18 18 O 1.21588 * 119.99714 * 2.72160 * 17 7 2 19 19 C 1.47599 * 119.99960 * 182.72624 * 17 7 2 20 20 C 1.39755 * 120.08709 * 26.92522 * 19 17 7 21 21 C 1.37678 * 119.90885 * 179.97438 * 20 19 17 22 22 C 1.39017 * 120.09321 * 0.02562 * 21 20 19 23 23 O 1.35708 * 119.91717 * 179.97438 * 22 21 20 24 24 C 1.38977 * 120.17499 * 359.97438 * 22 21 20 25 25 N 1.48012 * 119.95845 * 180.02562 * 24 22 21 26 26 O 1.21809 * 120.00273 * 180.02562 * 25 24 22 27 27 O 1.21794 * 120.00041 * 359.97438 * 25 24 22 28 28 C 1.37729 * 120.08564 * 359.78144 * 24 22 21 29 29 H 1.09002 * 109.47049 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47160 * 300.00383 * 1 2 3 31 31 H 1.08999 * 109.46699 * 60.00672 * 1 2 3 32 32 H 1.08993 * 115.54696 * 210.67249 * 4 2 1 33 33 H 1.09002 * 117.50183 * 0.02562 * 5 4 2 34 34 H 1.09002 * 117.50092 * 144.99281 * 5 4 2 35 35 H 1.09005 * 117.50216 * 107.49821 * 6 5 4 36 36 H 1.08998 * 117.50316 * 252.52418 * 6 5 4 37 37 H 1.09002 * 109.47379 * 194.85203 * 8 7 2 38 38 H 1.09001 * 109.47423 * 314.86153 * 8 7 2 39 39 H 0.96996 * 119.99754 * 179.97438 * 12 11 9 40 40 H 1.07998 * 120.04722 * 0.02562 * 20 19 17 41 41 H 1.08001 * 119.95778 * 179.97438 * 21 20 19 42 42 H 0.96696 * 114.00289 * 90.00140 * 23 22 21 43 43 H 1.08003 * 120.04585 * 180.25452 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.7348 -0.0848 -2.6066 6 6 0.9984 -1.3545 -2.1750 7 7 2.0184 -0.6906 1.1962 8 6 1.5611 -2.0499 1.4952 9 6 2.2420 -3.0241 0.5687 10 1 2.9453 -2.6665 -0.1688 11 6 1.9678 -4.3720 0.6632 12 7 1.1126 -4.8077 1.5623 13 14 2.8124 -5.5796 -0.4848 14 1 4.0791 -6.0471 0.1332 15 1 1.9197 -6.7421 -0.7239 16 1 3.1095 -4.9098 -1.7764 17 6 2.8882 -0.0753 2.0216 18 8 3.2294 1.0706 1.8005 19 6 3.4266 -0.7926 3.1939 20 6 3.5232 -2.1867 3.1787 21 6 4.0265 -2.8519 4.2740 22 6 4.4378 -2.1389 5.3942 23 8 4.9328 -2.7984 6.4721 24 6 4.3433 -0.7525 5.4134 25 7 4.7831 0.0019 6.6084 26 8 4.7003 1.2170 6.6262 27 8 5.2271 -0.5924 7.5744 28 6 3.8457 -0.0792 4.3198 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 2.9942 -1.2363 -1.1380 33 1 1.1710 0.8481 -2.6097 34 1 2.4882 -0.1810 -3.3885 35 1 -0.0503 -1.2572 -1.8941 36 1 1.2675 -2.2862 -2.6726 37 1 1.8079 -2.2974 2.5277 38 1 0.4818 -2.1092 1.3552 39 1 0.9195 -5.7559 1.6285 40 1 3.2043 -2.7414 2.3086 41 1 4.1011 -3.9293 4.2632 42 1 5.8905 -2.9294 6.4473 43 1 3.7764 0.9985 4.3337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097112704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = -1.477532 kcal Electronic energy + Delta-G solvation = -29738.785249 eV Core-core repulsion = 25561.860260 eV Total energy + Delta-G solvation = -4176.924988 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -42.02654 -40.43211 -39.16071 -37.65115 -36.71952 -36.14901 -35.11169 -32.97104 -31.94244 -30.77465 -29.47432 -27.75162 -26.19631 -24.82815 -23.75061 -22.79020 -22.33720 -21.93885 -20.42626 -19.16162 -18.68517 -18.34853 -18.13663 -17.34702 -16.98900 -16.49374 -16.05997 -15.71456 -15.40813 -15.21544 -14.74856 -14.39205 -14.16137 -13.84659 -13.53818 -13.20574 -12.67417 -12.59191 -12.37680 -12.17608 -11.84138 -11.58601 -11.48222 -11.35711 -11.25770 -11.16648 -11.10161 -10.93835 -10.92469 -10.72019 -10.54146 -10.30501 -10.02870 -9.72582 -9.57317 -9.36642 -9.26751 -8.98771 -8.73633 -8.01802 -6.51313 -4.60596 0.03003 0.72522 1.52585 1.58584 2.85953 3.00979 3.11860 3.13520 3.45516 3.62829 3.80357 4.05137 4.30518 4.52162 4.73855 4.77958 4.99922 5.07639 5.11855 5.28596 5.33820 5.44105 5.58396 5.62321 5.68078 5.74336 5.78078 5.95957 6.08027 6.12663 6.21313 6.26684 6.36498 6.45222 6.48431 6.52628 6.57081 6.67215 6.70096 6.98545 7.19865 7.31764 7.45452 7.66449 7.86724 8.02519 8.45327 8.63649 9.07478 10.53121 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.004482 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.524665 B = 6246.243113 C = 8048.264188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.175 3.825 3 H 0.093 0.907 4 C -0.136 4.136 5 C -0.194 4.194 6 C -0.164 4.164 7 N -0.577 5.577 8 C 0.210 3.790 9 C -0.543 4.543 10 H 0.075 0.925 11 C 0.071 3.929 12 N -0.877 5.877 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.270 1.270 17 C 0.558 3.442 18 O -0.560 6.560 19 C -0.142 4.142 20 C -0.022 4.022 21 C -0.160 4.160 22 C 0.194 3.806 23 O -0.475 6.475 24 C -0.103 4.103 25 N 0.040 4.960 26 O -0.181 6.181 27 O -0.152 6.152 28 C 0.007 3.993 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.271 0.729 40 H 0.219 0.781 41 H 0.156 0.844 42 H 0.403 0.597 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 2.266 -0.661 3.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.072 3.928 3 H 0.111 0.889 4 C -0.155 4.155 5 C -0.232 4.232 6 C -0.201 4.201 7 N -0.306 5.306 8 C 0.091 3.909 9 C -0.580 4.580 10 H 0.093 0.907 11 C -0.135 4.135 12 N -0.513 5.513 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.209 1.209 16 H -0.195 1.195 17 C 0.346 3.654 18 O -0.441 6.441 19 C -0.146 4.146 20 C -0.039 4.039 21 C -0.179 4.179 22 C 0.147 3.853 23 O -0.287 6.287 24 C -0.187 4.187 25 N 0.557 4.443 26 O -0.391 6.391 27 O -0.370 6.370 28 C -0.013 4.013 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.234 0.766 41 H 0.174 0.826 42 H 0.262 0.738 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.903 2.333 -1.100 3.205 hybrid contribution 0.900 -0.805 -0.310 1.246 sum 2.803 1.528 -1.410 3.490 Atomic orbital electron populations 1.22211 0.95248 1.03197 1.01245 1.20365 0.93511 0.96045 0.82898 0.88917 1.22624 1.01122 1.02306 0.89461 1.23007 1.04165 0.97447 0.98576 1.22957 0.98012 0.95874 1.03284 1.48083 1.42328 1.17741 1.22443 1.20219 0.97069 0.76078 0.97553 1.21556 1.26392 0.91038 1.19064 0.90685 1.25007 0.94735 0.98413 0.95338 1.69921 1.32353 1.15921 1.33096 0.86547 0.79455 0.80612 0.81380 1.20256 1.20862 1.19475 1.17881 0.79479 0.85570 0.82474 1.90731 1.61054 1.17642 1.74718 1.19979 1.05161 0.94166 0.95315 1.23907 0.84854 0.93831 1.01316 1.21618 1.02800 1.01950 0.91516 1.18509 0.93397 0.86521 0.86888 1.84770 1.28094 1.76544 1.39341 1.21369 1.16579 0.91396 0.89374 1.43376 0.98049 1.01027 1.01835 1.94535 1.60244 0.95884 1.88426 1.94518 1.46026 1.70917 1.25567 1.20929 0.89616 1.02059 0.88691 0.90667 0.92868 0.92013 0.87010 0.89447 0.89542 0.88549 0.89378 0.92783 0.93999 0.91955 0.76569 0.82630 0.73772 0.82285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 7.55 37.16 0.28 -2.11 16 2 C 0.18 2.94 3.01 -67.93 -0.20 2.73 16 3 H 0.09 1.62 6.91 -51.93 -0.36 1.26 16 4 C -0.14 -2.20 4.32 -90.58 -0.39 -2.59 16 5 C -0.19 -2.62 9.95 -26.74 -0.27 -2.88 16 6 C -0.16 -2.45 9.50 -26.70 -0.25 -2.70 16 7 N -0.58 -10.68 2.50 -168.66 -0.42 -11.10 16 8 C 0.21 4.18 4.42 -5.20 -0.02 4.15 16 9 C -0.54 -11.34 6.26 -34.44 -0.22 -11.55 16 10 H 0.08 1.59 5.31 -52.49 -0.28 1.31 16 11 C 0.07 1.55 5.40 -17.82 -0.10 1.46 16 12 N -0.88 -20.40 13.29 55.43 0.74 -19.67 16 13 Si 0.89 17.63 29.54 -169.99 -5.02 12.61 16 14 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 15 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 16 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 17 C 0.56 10.69 7.48 -12.44 -0.09 10.60 16 18 O -0.56 -11.76 15.97 5.29 0.08 -11.68 16 19 C -0.14 -2.49 5.53 -104.96 -0.58 -3.07 16 20 C -0.02 -0.37 7.42 -39.22 -0.29 -0.66 16 21 C -0.16 -2.37 9.97 -39.50 -0.39 -2.76 16 22 C 0.19 2.86 6.69 -39.02 -0.26 2.60 16 23 O -0.48 -6.14 11.49 -41.00 -0.47 -6.61 16 24 C -0.10 -1.66 6.86 -79.86 -0.55 -2.21 16 25 N 0.04 0.69 4.45 34.00 0.15 0.84 16 26 O -0.18 -3.21 18.44 -29.46 -0.54 -3.76 16 27 O -0.15 -2.57 17.23 -36.51 -0.63 -3.20 16 28 C 0.01 0.12 9.09 -39.22 -0.36 -0.24 16 29 H 0.07 1.21 5.82 -51.93 -0.30 0.91 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.78 7.18 -51.93 -0.37 0.41 16 32 H 0.11 2.02 6.23 -51.93 -0.32 1.69 16 33 H 0.09 1.07 7.93 -51.93 -0.41 0.66 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 1.38 5.82 -51.93 -0.30 1.08 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 1.11 4.19 -51.93 -0.22 0.90 16 38 H 0.04 0.90 6.45 -51.93 -0.33 0.57 16 39 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 40 H 0.22 4.08 3.23 -52.49 -0.17 3.91 16 41 H 0.16 2.05 8.06 -52.49 -0.42 1.63 16 42 H 0.40 3.24 9.06 45.56 0.41 3.65 16 43 H 0.16 2.63 7.41 -52.48 -0.39 2.24 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -25.54 354.01 -8.35 -33.88 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -3.87 Total: 12.59 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -3.69 Total: -9.25 kcal Atomic # 7 Polarization: -30.39 SS G_CDS: 0.47 Total: -29.93 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -1.56 Total: -25.24 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.02 Total: 12.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -25.54 -8.35 -33.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097112704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.407 kcal (2) G-P(sol) polarization free energy of solvation -25.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds