Wall clock time and date at job start Tue Mar 31 2020 05:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50702 * 119.99892 * 2 1 4 4 C 1.50694 * 109.46879 * 294.99792 * 3 2 1 5 5 O 1.21291 * 120.00100 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99910 * 179.72516 * 4 3 2 7 7 C 1.39931 * 120.00032 * 175.00150 * 6 4 3 8 8 C 1.38888 * 120.07106 * 326.55543 * 7 6 4 9 9 C 1.38092 * 119.92757 * 179.69603 * 8 7 6 10 10 C 1.38303 * 120.07007 * 0.59695 * 9 8 7 11 11 C 1.38261 * 120.14073 * 359.67664 * 10 9 8 12 12 N 1.48019 * 119.96600 * 179.97438 * 11 10 9 13 13 O 1.21800 * 120.00125 * 180.02562 * 12 11 10 14 14 O 1.21801 * 119.99768 * 0.02835 * 12 11 10 15 15 C 1.38129 * 120.07252 * 0.02562 * 11 10 9 16 16 N 1.28051 * 120.00014 * 179.97438 * 2 1 3 17 17 N 1.40101 * 120.00122 * 0.02562 * 16 2 1 18 18 C 1.34774 * 120.00261 * 179.97438 * 17 16 2 19 19 O 1.21796 * 119.99836 * 359.97438 * 18 17 16 20 20 C 1.41746 * 120.00005 * 179.97438 * 18 17 16 21 21 H 1.07994 * 119.99866 * 359.97438 * 20 18 17 22 22 C 1.40177 * 119.99819 * 179.97438 * 20 18 17 23 23 N 1.30615 * 120.00020 * 0.02562 * 22 20 18 24 24 Si 1.86788 * 119.99896 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47118 * 90.00350 * 24 22 20 26 26 H 1.48507 * 109.47199 * 209.99949 * 24 22 20 27 27 H 1.48497 * 109.47538 * 329.99787 * 24 22 20 28 28 H 1.08996 * 109.47114 * 90.00074 * 1 2 3 29 29 H 1.09000 * 109.47046 * 210.00370 * 1 2 3 30 30 H 1.08999 * 109.47105 * 329.99737 * 1 2 3 31 31 H 1.09004 * 109.46799 * 175.00423 * 3 2 1 32 32 H 1.08996 * 109.46957 * 54.99948 * 3 2 1 33 33 H 0.96999 * 119.99854 * 355.00991 * 6 4 3 34 34 H 1.08005 * 120.03603 * 359.97438 * 8 7 6 35 35 H 1.08000 * 119.96847 * 180.30183 * 9 8 7 36 36 H 1.08004 * 119.93147 * 179.69816 * 10 9 8 37 37 H 1.08000 * 120.04009 * 180.02562 * 15 11 10 38 38 H 0.97001 * 119.99844 * 359.97438 * 17 16 2 39 39 H 0.96997 * 119.99999 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9917 2.0403 -1.2877 5 8 1.2598 1.5527 -2.1230 6 7 2.5596 3.2424 -1.5086 7 6 2.3952 3.8774 -2.7446 8 6 2.3032 3.1236 -3.9075 9 6 2.1347 3.7530 -5.1250 10 6 2.0700 5.1330 -5.1886 11 6 2.1670 5.8866 -4.0335 12 7 2.0978 7.3633 -4.1061 13 8 2.1836 8.0278 -3.0889 14 8 1.9549 7.9141 -5.1830 15 6 2.3294 5.2628 -2.8118 16 7 2.1473 -1.1089 0.0005 17 7 1.4468 -2.3223 0.0005 18 6 2.1206 -3.4895 0.0005 19 8 3.3386 -3.4895 0.0000 20 6 1.4119 -4.7170 0.0010 21 1 0.3319 -4.7170 0.0019 22 6 2.1128 -5.9310 0.0005 23 7 3.4189 -5.9310 0.0000 24 14 1.1788 -7.5486 0.0005 25 1 0.9309 -7.9770 -1.3996 26 1 1.9817 -8.5838 0.7000 27 1 -0.1184 -7.3713 0.7011 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 3.3288 1.1079 0.0895 32 1 1.9317 1.9145 0.8418 33 1 3.0824 3.6674 -0.8107 34 1 2.3588 2.0460 -3.8591 35 1 2.0582 3.1672 -6.0291 36 1 1.9430 5.6232 -6.1426 37 1 2.4047 5.8519 -1.9097 38 1 0.4768 -2.3223 0.0005 39 1 3.9039 -6.7710 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100922321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:39 Heat of formation + Delta-G solvation = -1.734915 kcal Electronic energy + Delta-G solvation = -26709.894164 eV Core-core repulsion = 22429.417671 eV Total energy + Delta-G solvation = -4280.476493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.50263 -41.06946 -39.18483 -37.92467 -36.88002 -36.11359 -35.31501 -32.88304 -32.37751 -32.12549 -30.74832 -28.70031 -28.07818 -26.93275 -26.25037 -23.51162 -23.26182 -21.47415 -20.54038 -19.57985 -19.01909 -18.69398 -17.85402 -17.78809 -17.50192 -16.95240 -16.73554 -16.19084 -15.71231 -15.57681 -14.82921 -14.69853 -14.47889 -14.26684 -13.75072 -13.45430 -13.25626 -12.91597 -12.73471 -12.60604 -12.43110 -12.20335 -11.87948 -11.75167 -11.55834 -11.44650 -11.39868 -11.24249 -11.12506 -10.70346 -10.66103 -10.39471 -10.22724 -9.93482 -9.46313 -9.01627 -8.93627 -7.79342 -7.57187 -6.41208 -4.95075 -0.51467 0.41345 1.00881 1.02257 2.17154 2.26432 2.78432 2.92589 3.04042 3.09326 3.13176 3.70191 3.96801 4.07198 4.19281 4.28652 4.32255 4.43437 4.52241 4.62445 4.85463 4.92605 5.15357 5.20592 5.22953 5.45815 5.49597 5.54727 5.65919 5.71221 5.76702 5.92117 5.96240 6.18025 6.33063 6.70737 6.83949 7.20211 7.31457 7.66846 7.80053 7.99288 8.67903 8.76090 9.28105 10.38460 10.62351 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.029655 B = 0.001848 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.975854 B =15145.023173 C =15478.254636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.028 3.972 3 C -0.066 4.066 4 C 0.523 3.477 5 O -0.502 6.502 6 N -0.677 5.677 7 C 0.163 3.837 8 C -0.071 4.071 9 C -0.094 4.094 10 C -0.074 4.074 11 C -0.026 4.026 12 N 0.030 4.970 13 O -0.161 6.161 14 O -0.160 6.160 15 C -0.091 4.091 16 N -0.195 5.195 17 N -0.591 5.591 18 C 0.560 3.440 19 O -0.554 6.554 20 C -0.538 4.538 21 H 0.070 0.930 22 C 0.088 3.912 23 N -0.749 5.749 24 Si 0.917 3.083 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.263 1.263 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.418 0.582 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.371 0.629 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 20.806 -4.974 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 C -0.107 4.107 4 C 0.310 3.690 5 O -0.375 6.375 6 N -0.324 5.324 7 C 0.066 3.934 8 C -0.091 4.091 9 C -0.113 4.113 10 C -0.094 4.094 11 C -0.109 4.109 12 N 0.550 4.450 13 O -0.377 6.377 14 O -0.376 6.376 15 C -0.113 4.113 16 N -0.004 5.004 17 N -0.339 5.339 18 C 0.367 3.633 19 O -0.433 6.433 20 C -0.575 4.575 21 H 0.089 0.911 22 C -0.135 4.135 23 N -0.376 5.376 24 Si 0.740 3.260 25 H -0.194 1.194 26 H -0.201 1.201 27 H -0.187 1.187 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.255 0.745 34 H 0.174 0.826 35 H 0.170 0.830 36 H 0.172 0.828 37 H 0.174 0.826 38 H 0.208 0.792 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.241 18.941 -5.452 19.837 hybrid contribution -1.563 0.132 0.357 1.609 sum -3.804 19.073 -5.095 20.105 Atomic orbital electron populations 1.21109 0.93245 1.02297 1.03129 1.23511 0.93419 0.92420 1.07322 1.20177 1.03370 0.92774 0.94419 1.21065 0.78527 0.79662 0.89708 1.90745 1.34469 1.65692 1.46577 1.43664 1.53793 1.20971 1.13975 1.17428 0.99491 0.89859 0.86588 1.21792 0.94217 1.02603 0.90490 1.21152 0.98662 0.92749 0.98767 1.21077 0.96469 0.94168 0.97689 1.20752 1.14248 0.79296 0.96616 1.43596 0.97466 1.03556 1.00420 1.94544 1.53468 1.64310 1.25379 1.94545 1.52566 1.73456 1.16983 1.20626 0.99586 0.93609 0.97432 1.73892 1.28174 0.92906 1.05423 1.47993 1.07558 1.01380 1.76971 1.17065 0.87768 0.80436 0.77986 1.90661 1.13603 1.85357 1.53660 1.19938 0.94311 0.89437 1.53828 0.91132 1.25754 0.94694 1.00635 0.92427 1.70009 1.07305 1.27982 1.32309 0.86223 0.80107 0.80531 0.79105 1.19444 1.20146 1.18665 0.90335 0.91909 0.91641 0.86480 0.86924 0.74496 0.82571 0.82972 0.82841 0.82607 0.79185 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 8.88 36.01 0.32 -1.55 16 2 C 0.03 0.43 6.04 -78.89 -0.48 -0.04 16 3 C -0.07 -0.68 6.08 -29.04 -0.18 -0.85 16 4 C 0.52 5.45 7.48 -10.99 -0.08 5.36 16 5 O -0.50 -7.05 12.72 5.55 0.07 -6.98 16 6 N -0.68 -4.83 5.34 -9.86 -0.05 -4.89 16 7 C 0.16 1.34 6.28 -83.69 -0.53 0.81 16 8 C -0.07 -0.63 8.66 -39.39 -0.34 -0.97 16 9 C -0.09 -0.66 10.04 -39.61 -0.40 -1.06 16 10 C -0.07 -0.55 9.55 -39.55 -0.38 -0.93 16 11 C -0.03 -0.23 6.85 -79.98 -0.55 -0.78 16 12 N 0.03 0.33 4.45 33.95 0.15 0.48 16 13 O -0.16 -1.87 18.45 -29.46 -0.54 -2.41 16 14 O -0.16 -1.85 18.44 -29.46 -0.54 -2.40 16 15 C -0.09 -0.70 9.47 -39.39 -0.37 -1.07 16 16 N -0.20 -4.17 10.93 35.61 0.39 -3.78 16 17 N -0.59 -13.99 6.08 29.13 0.18 -13.81 16 18 C 0.56 16.17 7.69 -14.92 -0.11 16.05 16 19 O -0.55 -18.29 15.22 5.10 0.08 -18.22 16 20 C -0.54 -14.84 9.31 -37.51 -0.35 -15.19 16 21 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 22 C 0.09 2.37 5.50 -17.34 -0.10 2.28 16 23 N -0.75 -21.78 11.73 55.56 0.65 -21.13 16 24 Si 0.92 19.27 29.56 -169.99 -5.02 14.25 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 27 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 28 H 0.08 1.13 7.55 -51.93 -0.39 0.73 16 29 H 0.06 0.87 6.31 -51.93 -0.33 0.55 16 30 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 31 H 0.12 1.16 8.11 -51.93 -0.42 0.74 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.42 1.50 8.82 -40.82 -0.36 1.14 16 34 H 0.16 1.63 6.43 -52.48 -0.34 1.29 16 35 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.15 0.91 7.60 -52.48 -0.40 0.51 16 37 H 0.16 0.95 7.61 -52.49 -0.40 0.55 16 38 H 0.37 7.56 6.34 -182.60 -1.16 6.40 16 39 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -38.46 355.30 -7.44 -45.90 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.61 Total: 5.57 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -3.54 Total: 2.06 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 1.32 Total: -43.13 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.94 Total: -30.00 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.46 -7.44 -45.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100922321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.166 kcal (2) G-P(sol) polarization free energy of solvation -38.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds