Wall clock time and date at job start Tue Mar 31 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50702 * 119.99892 * 2 1 4 4 C 1.50694 * 109.46879 * 294.99792 * 3 2 1 5 5 O 1.21291 * 120.00100 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99910 * 179.72516 * 4 3 2 7 7 C 1.39931 * 120.00032 * 175.00150 * 6 4 3 8 8 C 1.38888 * 120.07106 * 326.55543 * 7 6 4 9 9 C 1.38092 * 119.92757 * 179.69603 * 8 7 6 10 10 C 1.38303 * 120.07007 * 0.59695 * 9 8 7 11 11 C 1.38261 * 120.14073 * 359.67664 * 10 9 8 12 12 N 1.48019 * 119.96600 * 179.97438 * 11 10 9 13 13 O 1.21800 * 120.00125 * 180.02562 * 12 11 10 14 14 O 1.21801 * 119.99768 * 0.02835 * 12 11 10 15 15 C 1.38129 * 120.07252 * 0.02562 * 11 10 9 16 16 N 1.28051 * 120.00014 * 179.97438 * 2 1 3 17 17 N 1.40101 * 120.00122 * 0.02562 * 16 2 1 18 18 C 1.34774 * 120.00261 * 179.97438 * 17 16 2 19 19 O 1.21796 * 119.99836 * 359.97438 * 18 17 16 20 20 C 1.41746 * 120.00005 * 179.97438 * 18 17 16 21 21 H 1.07994 * 119.99866 * 359.97438 * 20 18 17 22 22 C 1.40177 * 119.99819 * 179.97438 * 20 18 17 23 23 N 1.30615 * 120.00020 * 0.02562 * 22 20 18 24 24 Si 1.86788 * 119.99896 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47118 * 90.00350 * 24 22 20 26 26 H 1.48507 * 109.47199 * 209.99949 * 24 22 20 27 27 H 1.48497 * 109.47538 * 329.99787 * 24 22 20 28 28 H 1.08996 * 109.47114 * 90.00074 * 1 2 3 29 29 H 1.09000 * 109.47046 * 210.00370 * 1 2 3 30 30 H 1.08999 * 109.47105 * 329.99737 * 1 2 3 31 31 H 1.09004 * 109.46799 * 175.00423 * 3 2 1 32 32 H 1.08996 * 109.46957 * 54.99948 * 3 2 1 33 33 H 0.96999 * 119.99854 * 355.00991 * 6 4 3 34 34 H 1.08005 * 120.03603 * 359.97438 * 8 7 6 35 35 H 1.08000 * 119.96847 * 180.30183 * 9 8 7 36 36 H 1.08004 * 119.93147 * 179.69816 * 10 9 8 37 37 H 1.08000 * 120.04009 * 180.02562 * 15 11 10 38 38 H 0.97001 * 119.99844 * 359.97438 * 17 16 2 39 39 H 0.96997 * 119.99999 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9917 2.0403 -1.2877 5 8 1.2598 1.5527 -2.1230 6 7 2.5596 3.2424 -1.5086 7 6 2.3952 3.8774 -2.7446 8 6 2.3032 3.1236 -3.9075 9 6 2.1347 3.7530 -5.1250 10 6 2.0700 5.1330 -5.1886 11 6 2.1670 5.8866 -4.0335 12 7 2.0978 7.3633 -4.1061 13 8 2.1836 8.0278 -3.0889 14 8 1.9549 7.9141 -5.1830 15 6 2.3294 5.2628 -2.8118 16 7 2.1473 -1.1089 0.0005 17 7 1.4468 -2.3223 0.0005 18 6 2.1206 -3.4895 0.0005 19 8 3.3386 -3.4895 0.0000 20 6 1.4119 -4.7170 0.0010 21 1 0.3319 -4.7170 0.0019 22 6 2.1128 -5.9310 0.0005 23 7 3.4189 -5.9310 0.0000 24 14 1.1788 -7.5486 0.0005 25 1 0.9309 -7.9770 -1.3996 26 1 1.9817 -8.5838 0.7000 27 1 -0.1184 -7.3713 0.7011 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 3.3288 1.1079 0.0895 32 1 1.9317 1.9145 0.8418 33 1 3.0824 3.6674 -0.8107 34 1 2.3588 2.0460 -3.8591 35 1 2.0582 3.1672 -6.0291 36 1 1.9430 5.6232 -6.1426 37 1 2.4047 5.8519 -1.9097 38 1 0.4768 -2.3223 0.0005 39 1 3.9039 -6.7710 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100922321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:37 Heat of formation + Delta-G solvation = -30.297152 kcal Electronic energy + Delta-G solvation = -26711.132715 eV Core-core repulsion = 22429.417671 eV Total energy + Delta-G solvation = -4281.715044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.116 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.29594 -41.84360 -40.08622 -39.59149 -37.79215 -37.70813 -36.11467 -34.80920 -33.82467 -32.98187 -31.67872 -30.14107 -29.15916 -28.14023 -27.69178 -24.29799 -23.95449 -22.73747 -21.87035 -20.38531 -20.27651 -19.81068 -19.28977 -18.64255 -18.45918 -17.76742 -17.62059 -17.55319 -17.21428 -16.61865 -16.00509 -15.68633 -15.67734 -15.20220 -14.93117 -14.80553 -14.56686 -14.34526 -14.01072 -13.55176 -13.37750 -13.09607 -13.01140 -12.87979 -12.81720 -12.72368 -12.69109 -12.38559 -12.32160 -12.29981 -12.03475 -11.85503 -11.19322 -10.99016 -10.88413 -10.60854 -9.98707 -9.59901 -9.36191 -8.42380 -7.08114 -1.28495 -0.20535 0.25009 0.27726 1.10465 1.38000 1.38176 1.41723 1.56393 1.81798 2.12594 2.28122 2.40319 2.43690 3.39344 3.47524 3.58547 3.62675 3.64575 3.70632 3.90320 4.03575 4.09438 4.33195 4.35516 4.52288 4.59895 4.67505 4.78614 4.83282 4.95030 5.02100 5.17003 5.18130 5.19687 5.36577 5.49735 5.80101 6.03835 6.19714 6.44648 6.68968 6.92131 6.98442 7.46994 8.41874 8.59005 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.029655 B = 0.001848 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.975854 B =15145.023173 C =15478.254636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 C -0.069 4.069 4 C 0.529 3.471 5 O -0.544 6.544 6 N -0.657 5.657 7 C 0.155 3.845 8 C -0.082 4.082 9 C -0.087 4.087 10 C -0.068 4.068 11 C -0.040 4.040 12 N 0.032 4.968 13 O -0.174 6.174 14 O -0.177 6.177 15 C -0.080 4.080 16 N -0.270 5.270 17 N -0.600 5.600 18 C 0.546 3.454 19 O -0.614 6.614 20 C -0.566 4.566 21 H 0.092 0.908 22 C 0.030 3.970 23 N -0.803 5.803 24 Si 1.008 2.992 25 H -0.259 1.259 26 H -0.269 1.269 27 H -0.246 1.246 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.167 0.833 33 H 0.437 0.563 34 H 0.139 0.861 35 H 0.176 0.824 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.382 0.618 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.313 21.850 -4.693 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.110 4.110 4 C 0.317 3.683 5 O -0.420 6.420 6 N -0.305 5.305 7 C 0.059 3.941 8 C -0.103 4.103 9 C -0.106 4.106 10 C -0.088 4.088 11 C -0.123 4.123 12 N 0.548 4.452 13 O -0.389 6.389 14 O -0.390 6.390 15 C -0.101 4.101 16 N -0.076 5.076 17 N -0.346 5.346 18 C 0.355 3.645 19 O -0.499 6.499 20 C -0.602 4.602 21 H 0.110 0.890 22 C -0.188 4.188 23 N -0.431 5.431 24 Si 0.825 3.175 25 H -0.184 1.184 26 H -0.193 1.193 27 H -0.169 1.169 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.141 0.859 32 H 0.185 0.815 33 H 0.278 0.722 34 H 0.157 0.843 35 H 0.193 0.807 36 H 0.187 0.813 37 H 0.192 0.808 38 H 0.221 0.779 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.897 20.090 -5.161 21.106 hybrid contribution -1.103 0.106 0.236 1.133 sum -5.000 20.197 -4.925 21.381 Atomic orbital electron populations 1.21222 0.91621 1.04002 1.03327 1.24620 0.95283 0.92840 0.99592 1.20436 1.03324 0.90695 0.96573 1.20884 0.78146 0.80236 0.89010 1.90754 1.36629 1.66895 1.47679 1.43358 1.53065 1.19845 1.14246 1.17420 1.00125 0.89990 0.86612 1.21830 0.94812 1.01970 0.91688 1.21373 0.97553 0.92664 0.99050 1.21307 0.95302 0.94189 0.97990 1.20928 1.15613 0.78071 0.97720 1.43842 0.96953 1.04329 1.00099 1.94529 1.53879 1.65046 1.25414 1.94537 1.53278 1.74100 1.17126 1.20716 0.98353 0.93304 0.97759 1.74010 1.29076 0.93193 1.11331 1.47259 1.07718 1.01785 1.77848 1.17417 0.87314 0.82330 0.77437 1.90590 1.15860 1.86854 1.56591 1.20497 0.95511 0.90033 1.54168 0.89015 1.27109 0.95583 1.05239 0.90869 1.70170 1.09830 1.29694 1.33442 0.84879 0.78760 0.74140 0.79672 1.18398 1.19303 1.16898 0.90740 0.92519 0.87582 0.85903 0.81535 0.72220 0.84314 0.80668 0.81346 0.80825 0.77889 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.88 71.24 0.63 -2.93 16 2 C 0.07 2.15 6.04 46.53 0.28 2.43 16 3 C -0.07 -1.22 6.08 29.10 0.18 -1.04 16 4 C 0.53 9.80 7.48 87.65 0.66 10.45 16 5 O -0.54 -14.58 12.72 -3.06 -0.04 -14.62 16 6 N -0.66 -7.58 5.34 -303.50 -1.62 -9.20 16 7 C 0.15 2.22 6.28 38.15 0.24 2.46 16 8 C -0.08 -1.36 8.66 22.39 0.19 -1.16 16 9 C -0.09 -1.07 10.04 22.25 0.22 -0.85 16 10 C -0.07 -0.88 9.55 22.29 0.21 -0.67 16 11 C -0.04 -0.64 6.85 36.35 0.25 -0.39 16 12 N 0.03 0.66 4.45 -46.51 -0.21 0.45 16 13 O -0.17 -3.83 18.45 18.89 0.35 -3.48 16 14 O -0.18 -3.96 18.44 18.89 0.35 -3.61 16 15 C -0.08 -1.05 9.47 22.39 0.21 -0.84 16 16 N -0.27 -11.76 10.93 -41.18 -0.45 -12.21 16 17 N -0.60 -29.37 6.08 -179.93 -1.09 -30.46 16 18 C 0.55 33.05 7.69 85.11 0.65 33.70 16 19 O -0.61 -42.91 15.22 -4.66 -0.07 -42.98 16 20 C -0.57 -32.03 9.31 23.61 0.22 -31.81 16 21 H 0.09 4.58 7.85 -2.91 -0.02 4.55 16 22 C 0.03 1.65 5.50 85.34 0.47 2.12 16 23 N -0.80 -48.52 11.73 21.86 0.26 -48.26 16 24 Si 1.01 39.52 29.56 68.60 2.03 41.55 16 25 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 26 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 27 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 28 H 0.07 2.03 7.55 -2.39 -0.02 2.02 16 29 H 0.06 1.51 6.31 -2.39 -0.02 1.50 16 30 H 0.11 1.81 8.12 -2.39 -0.02 1.79 16 31 H 0.12 2.17 8.11 -2.38 -0.02 2.15 16 32 H 0.17 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.44 1.58 8.82 -92.71 -0.82 0.76 16 34 H 0.14 2.86 6.43 -2.91 -0.02 2.84 16 35 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 36 H 0.17 1.66 7.60 -2.91 -0.02 1.63 16 37 H 0.17 1.60 7.61 -2.91 -0.02 1.57 16 38 H 0.38 15.99 6.34 -213.32 -1.35 14.64 16 39 H 0.28 15.13 8.29 -92.71 -0.77 14.36 16 Total: -1.00 -90.50 355.30 2.90 -87.61 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -1.02 Total: 23.76 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 4.42 Total: 11.47 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -3.12 Total: -99.68 kcal Atomic # 8 Polarization: -65.29 SS G_CDS: 0.59 Total: -64.70 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -90.50 2.90 -87.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100922321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.308 kcal (2) G-P(sol) polarization free energy of solvation -90.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds