Wall clock time and date at job start Tue Mar 31 2020 05:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.33331 * 122.70844 * 2 1 4 4 S 1.76162 * 108.09529 * 179.97438 * 3 2 1 5 5 C 1.70967 * 90.35648 * 359.97438 * 4 3 2 6 6 N 1.38607 * 124.94580 * 179.97438 * 5 4 3 7 7 C 1.46958 * 111.00071 * 236.04754 * 6 5 4 8 8 C 1.53053 * 109.36509 * 176.81541 * 7 6 5 9 9 N 1.46964 * 109.36400 * 58.40263 * 8 7 6 10 10 C 1.46895 * 110.99813 * 176.80973 * 9 8 7 11 11 C 1.52996 * 109.47331 * 294.13010 * 10 9 8 12 12 H 1.08996 * 109.47173 * 56.84195 * 11 10 9 13 13 C 1.47197 * 109.47018 * 296.83591 * 11 10 9 14 14 N 8.14535 * 103.58097 * 181.93562 * 2 1 3 15 15 C 1.53001 * 109.47295 * 176.84143 * 11 10 9 16 16 C 1.50700 * 109.47570 * 184.99923 * 15 11 10 17 17 H 1.07998 * 119.99614 * 359.97438 * 16 15 11 18 18 C 1.37876 * 120.00223 * 179.97438 * 16 15 11 19 19 N 1.31510 * 119.99807 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99881 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46938 * 60.00229 * 20 18 16 22 22 H 1.48499 * 109.46909 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47094 * 299.99982 * 20 18 16 24 24 C 1.46958 * 110.87919 * 300.67911 * 9 8 7 25 25 C 1.46964 * 110.99659 * 112.25151 * 6 5 4 26 26 H 1.08998 * 109.48858 * 63.22360 * 25 6 5 27 27 C 1.52997 * 109.48904 * 303.15412 * 25 6 5 28 28 N 1.29679 * 110.10157 * 0.02562 * 5 4 3 29 29 H 1.08994 * 109.47118 * 90.02186 * 1 2 3 30 30 H 1.09000 * 109.46653 * 210.02722 * 1 2 3 31 31 H 1.08997 * 109.46843 * 330.01862 * 1 2 3 32 32 H 1.08000 * 125.95082 * 359.71654 * 3 2 1 33 33 H 1.09000 * 109.49034 * 296.78459 * 7 6 5 34 34 H 1.09000 * 109.48808 * 56.85026 * 7 6 5 35 35 H 1.09000 * 109.48917 * 178.36652 * 8 7 6 36 36 H 1.08998 * 109.49198 * 298.41546 * 8 7 6 37 37 H 1.09005 * 109.46956 * 54.12815 * 10 9 8 38 38 H 1.09003 * 109.47150 * 174.12608 * 10 9 8 39 39 H 1.09000 * 109.47072 * 305.00174 * 15 11 10 40 40 H 1.09004 * 109.47003 * 64.99341 * 15 11 10 41 41 H 0.97006 * 119.99877 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.48808 * 179.28669 * 24 9 8 43 43 H 1.09001 * 109.48588 * 299.35531 * 24 9 8 44 44 H 1.08995 * 109.47095 * 59.99816 * 27 25 6 45 45 H 1.08998 * 109.47342 * 180.02562 * 27 25 6 46 46 H 1.09002 * 109.46902 * 299.99795 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2275 1.1219 0.0000 4 16 3.9322 0.6774 0.0007 5 6 3.5111 -0.9796 0.0018 6 7 4.4168 -2.0289 0.0022 7 6 4.1806 -2.9289 -1.1353 8 6 5.2474 -4.0263 -1.1441 9 7 5.1984 -4.7637 0.1262 10 6 6.1581 -5.8758 0.1267 11 6 5.7378 -6.9127 -0.9169 12 1 5.6653 -6.4357 -1.8943 13 6 4.4294 -7.4774 -0.5481 14 7 3.4198 -7.9131 -0.2674 15 6 6.7792 -8.0322 -0.9718 16 6 6.4305 -8.9888 -2.0828 17 1 5.5535 -8.8158 -2.6889 18 6 7.2310 -10.0848 -2.3256 19 7 8.2992 -10.2951 -1.5879 20 14 6.7983 -11.2709 -3.7023 21 1 6.7844 -10.5430 -4.9966 22 1 7.8099 -12.3567 -3.7564 23 1 5.4569 -11.8554 -3.4487 24 6 5.4345 -3.8637 1.2637 25 6 4.3677 -2.7663 1.2725 26 1 3.3829 -3.2174 1.3933 27 6 4.6347 -1.8042 2.4318 28 7 2.2211 -1.1116 0.0010 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5143 31 1 -0.3633 0.8901 0.5135 32 1 1.8345 2.1278 -0.0043 33 1 3.1936 -3.3818 -1.0419 34 1 4.2344 -2.3620 -2.0648 35 1 5.0572 -4.7118 -1.9700 36 1 6.2322 -3.5753 -1.2653 37 1 7.1516 -5.4985 -0.1157 38 1 6.1763 -6.3397 1.1129 39 1 7.7641 -7.6035 -1.1572 40 1 6.7886 -8.5666 -0.0218 41 1 8.8626 -11.0660 -1.7589 42 1 5.3807 -4.4306 2.1932 43 1 6.4215 -3.4108 1.1702 44 1 3.8760 -1.0217 2.4366 45 1 4.5987 -2.3514 3.3738 46 1 5.6201 -1.3542 2.3109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106908473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:31 Heat of formation + Delta-G solvation = 59.260085 kcal Electronic energy + Delta-G solvation = -26268.648106 eV Core-core repulsion = 22705.235615 eV Total energy + Delta-G solvation = -3563.412491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.57379 -40.11263 -38.39541 -36.55728 -35.40332 -33.80275 -33.37111 -32.08627 -29.49971 -28.54600 -28.41918 -26.74314 -24.74886 -24.13415 -23.59185 -22.51680 -21.49321 -20.01501 -18.98160 -18.51364 -18.18876 -17.55162 -16.92949 -16.67857 -16.14527 -16.03329 -15.69657 -15.47445 -15.30632 -14.95799 -14.66195 -14.50564 -14.20804 -14.08890 -13.76319 -13.54019 -13.40855 -13.36349 -13.21699 -13.05773 -13.00107 -12.82131 -12.63407 -12.52277 -12.45182 -12.22046 -12.20219 -12.12926 -11.95639 -11.66973 -11.34253 -11.10798 -10.85653 -10.53779 -10.35062 -9.89239 -9.58756 -9.25455 -8.18515 -6.26352 -0.31070 0.27896 0.84361 1.41131 1.42924 1.49790 1.72966 2.07879 2.15890 2.41909 2.65735 2.83976 3.16983 3.35191 3.36359 3.75995 3.87742 4.03987 4.17019 4.26024 4.28637 4.29982 4.36686 4.39674 4.44334 4.62687 4.64304 4.73095 4.73860 4.75374 4.78058 4.80516 4.85238 4.94240 4.99339 5.01022 5.05743 5.19950 5.27408 5.48074 5.60889 5.63834 5.79856 5.85917 6.06653 6.11960 6.23233 6.74504 6.84153 6.94556 7.41929 8.92095 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022152 B = 0.002388 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.716158 B =11724.093763 C =12074.785976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.049 3.951 3 C -0.263 4.263 4 S 0.195 5.805 5 C 0.196 3.804 6 N -0.455 5.455 7 C 0.074 3.926 8 C 0.056 3.944 9 N -0.560 5.560 10 C 0.076 3.924 11 C 0.020 3.980 12 H 0.116 0.884 13 C 0.267 3.733 14 N -0.517 5.517 15 C 0.040 3.960 16 C -0.539 4.539 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.946 3.054 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.283 1.283 24 C 0.068 3.932 25 C 0.095 3.905 26 H 0.034 0.966 27 C -0.139 4.139 28 N -0.528 5.528 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.207 0.793 33 H 0.033 0.967 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.002 0.998 41 H 0.264 0.736 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.380 28.704 5.021 29.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 C -0.402 4.402 4 S 0.449 5.551 5 C -0.172 4.172 6 N -0.179 5.179 7 C -0.055 4.055 8 C -0.072 4.072 9 N -0.285 5.285 10 C -0.053 4.053 11 C -0.001 4.001 12 H 0.134 0.866 13 C -0.049 4.049 14 N -0.195 5.195 15 C 0.001 3.999 16 C -0.577 4.577 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.772 3.228 21 H -0.188 1.188 22 H -0.207 1.207 23 H -0.209 1.209 24 C -0.060 4.060 25 C -0.015 4.015 26 H 0.053 0.947 27 C -0.197 4.197 28 N -0.248 5.248 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.224 0.776 33 H 0.051 0.949 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.993 27.958 5.466 29.333 hybrid contribution -0.813 -1.215 -0.864 1.698 sum -7.805 26.743 4.602 28.236 Atomic orbital electron populations 1.20420 0.85931 1.03793 1.03428 1.20467 0.99188 0.86704 1.02047 1.27162 0.95211 1.04833 1.13042 1.83738 1.06114 0.98947 1.66276 1.24861 0.89439 0.98926 1.03927 1.60220 1.43105 1.09561 1.05061 1.22133 0.98070 0.92735 0.92612 1.22254 0.98317 0.94314 0.92347 1.62096 1.51958 1.10854 1.03587 1.22043 0.94325 0.89910 0.98995 1.19230 0.84267 0.96038 1.00603 0.86642 1.29327 0.94010 0.90563 0.91002 1.80934 1.14549 1.12349 1.11649 1.18977 0.93556 0.91519 0.95864 1.21512 1.09949 1.09506 1.16781 0.92983 1.25678 0.95026 0.99387 0.98524 1.70016 1.15743 1.29688 1.40721 0.85790 0.77531 0.78969 0.80542 1.18750 1.20668 1.20870 1.22193 0.97334 0.92188 0.94256 1.21762 0.98297 0.93406 0.87987 0.94737 1.21811 1.02567 0.98453 0.96869 1.66941 1.05881 1.33995 1.17970 0.90180 0.92094 0.88267 0.77601 0.94870 0.89225 0.89424 0.91869 0.90572 0.90132 0.94401 0.97984 0.92701 0.89221 0.92026 0.93702 0.90128 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.31 71.24 0.73 -0.34 16 2 C 0.05 0.93 6.74 41.41 0.28 1.21 16 3 C -0.26 -3.76 11.10 66.71 0.74 -3.02 16 4 S 0.19 3.10 23.17 -56.49 -1.31 1.79 16 5 C 0.20 4.35 4.39 179.32 0.79 5.13 16 6 N -0.45 -10.18 4.61 -684.33 -3.16 -13.34 16 7 C 0.07 1.76 5.45 86.31 0.47 2.24 16 8 C 0.06 1.30 5.41 86.31 0.47 1.77 16 9 N -0.56 -14.51 4.36 -895.70 -3.91 -18.42 16 10 C 0.08 2.10 4.34 86.30 0.37 2.48 16 11 C 0.02 0.73 2.11 -12.60 -0.03 0.70 16 12 H 0.12 3.80 6.34 -2.39 -0.02 3.78 16 13 C 0.27 11.25 13.62 89.45 1.22 12.46 16 14 N -0.52 -24.07 18.53 19.99 0.37 -23.70 16 15 C 0.04 1.81 4.42 29.85 0.13 1.94 16 16 C -0.54 -28.54 8.60 25.60 0.22 -28.32 16 17 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 18 C 0.01 0.71 5.46 84.66 0.46 1.17 16 19 N -0.92 -52.71 13.29 21.45 0.28 -52.43 16 20 Si 0.95 43.52 29.54 68.60 2.03 45.55 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 24 C 0.07 1.47 4.89 86.31 0.42 1.89 16 25 C 0.09 2.11 2.52 44.92 0.11 2.22 16 26 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 27 C -0.14 -2.41 9.01 71.98 0.65 -1.76 16 28 N -0.53 -13.15 10.36 -189.86 -1.97 -15.12 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 0.83 8.12 -2.39 -0.02 0.81 16 32 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 33 H 0.03 0.98 8.06 -2.39 -0.02 0.96 16 34 H 0.09 1.94 8.13 -2.39 -0.02 1.92 16 35 H 0.09 2.11 6.27 -2.39 -0.01 2.10 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.84 8.12 -2.38 -0.02 1.82 16 38 H 0.08 2.26 8.03 -2.39 -0.02 2.24 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 42 H 0.09 1.83 8.07 -2.39 -0.02 1.82 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.04 0.84 7.10 -2.39 -0.02 0.83 16 45 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -67.83 389.03 0.35 -67.48 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.97 Total: 8.41 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 7.04 Total: -0.22 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -8.38 Total: -123.01 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.31 Total: 1.79 kcal Total: -67.83 0.35 -67.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106908473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.736 kcal (2) G-P(sol) polarization free energy of solvation -67.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds