Wall clock time and date at job start Tue Mar 31 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33328 * 122.71057 * 2 1 4 4 S 1.76157 * 108.09742 * 180.02562 * 3 2 1 5 5 C 1.70968 * 90.35911 * 359.97438 * 4 3 2 6 6 N 1.38600 * 124.95060 * 179.97438 * 5 4 3 7 7 C 1.46962 * 111.00140 * 248.81091 * 6 5 4 8 8 C 1.53044 * 109.36468 * 176.80994 * 7 6 5 9 9 N 1.46956 * 109.36560 * 58.40743 * 8 7 6 10 10 C 1.46897 * 111.00033 * 176.80776 * 9 8 7 11 11 C 1.53002 * 109.47117 * 199.45355 * 10 9 8 12 12 H 1.09003 * 109.46935 * 305.04785 * 11 10 9 13 13 C 1.47198 * 109.47183 * 65.04810 * 11 10 9 14 14 N 8.21910 * 103.71579 * 183.18751 * 2 1 3 15 15 C 1.53000 * 109.47384 * 185.04826 * 11 10 9 16 16 C 1.50699 * 109.47100 * 175.00033 * 15 11 10 17 17 H 1.07993 * 120.00198 * 359.97438 * 16 15 11 18 18 C 1.37881 * 119.99892 * 180.02562 * 16 15 11 19 19 N 1.31509 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99931 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47265 * 89.99889 * 20 18 16 22 22 H 1.48502 * 109.47150 * 210.00558 * 20 18 16 23 23 H 1.48506 * 109.47112 * 329.99733 * 20 18 16 24 24 C 1.46959 * 110.87651 * 300.67330 * 9 8 7 25 25 C 1.46956 * 111.00167 * 125.01209 * 6 5 4 26 26 H 1.09004 * 109.48546 * 63.21886 * 25 6 5 27 27 C 1.52998 * 109.48940 * 303.15572 * 25 6 5 28 28 N 1.29691 * 110.09673 * 0.24506 * 5 4 3 29 29 H 1.09001 * 109.46990 * 90.02256 * 1 2 3 30 30 H 1.09002 * 109.47032 * 210.02542 * 1 2 3 31 31 H 1.09001 * 109.47317 * 330.02588 * 1 2 3 32 32 H 1.07999 * 125.95082 * 359.97438 * 3 2 1 33 33 H 1.09008 * 109.48701 * 56.84671 * 7 6 5 34 34 H 1.08998 * 109.48929 * 296.78727 * 7 6 5 35 35 H 1.08996 * 109.49547 * 298.43411 * 8 7 6 36 36 H 1.09005 * 109.50545 * 178.37922 * 8 7 6 37 37 H 1.08997 * 109.47234 * 319.45593 * 10 9 8 38 38 H 1.08997 * 109.47013 * 79.45871 * 10 9 8 39 39 H 1.08997 * 109.47301 * 295.00271 * 15 11 10 40 40 H 1.09001 * 109.46533 * 55.00455 * 15 11 10 41 41 H 0.97002 * 119.99907 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.48991 * 299.35546 * 24 9 8 43 43 H 1.08999 * 109.48777 * 179.28754 * 24 9 8 44 44 H 1.08994 * 109.47020 * 295.80752 * 27 25 6 45 45 H 1.08995 * 109.47064 * 55.81100 * 27 25 6 46 46 H 1.09004 * 109.47044 * 175.80728 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2275 1.1218 0.0000 4 16 3.9321 0.6774 -0.0007 5 6 3.5111 -0.9796 -0.0002 6 7 4.4167 -2.0289 -0.0010 7 6 4.3842 -2.7517 -1.2801 8 6 5.4508 -3.8492 -1.2701 9 7 5.2000 -4.7622 -0.1461 10 6 6.1598 -5.8743 -0.1470 11 6 5.6050 -7.0273 0.6919 12 1 5.3595 -6.6650 1.6902 13 6 4.3918 -7.5608 0.0513 14 7 3.4558 -7.9724 -0.4440 15 6 6.6560 -8.1345 0.7954 16 6 6.1583 -9.2145 1.7211 17 1 5.1897 -9.1205 2.1891 18 6 6.9403 -10.3222 1.9713 19 7 6.5062 -11.2645 2.7795 20 14 8.6167 -10.4838 1.1634 21 1 9.6481 -9.8668 2.0356 22 1 8.9331 -11.9208 0.9628 23 1 8.6016 -9.7924 -0.1508 24 6 5.2325 -4.0394 1.1330 25 6 4.1659 -2.9418 1.1230 26 1 3.1802 -3.3936 1.0115 27 6 4.2244 -2.1612 2.4375 28 7 2.2209 -1.1117 -0.0048 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 1.8345 2.1278 -0.0004 33 1 4.5851 -2.0569 -2.0957 34 1 3.4010 -3.2013 -1.4189 35 1 6.4365 -3.3975 -1.1586 36 1 5.4095 -4.4055 -2.2066 37 1 6.3212 -6.2141 -1.1700 38 1 7.1056 -5.5382 0.2778 39 1 6.8365 -8.5576 -0.1928 40 1 7.5841 -7.7188 1.1878 41 1 7.0562 -12.0440 2.9552 42 1 6.2157 -3.5898 1.2717 43 1 5.0317 -4.7342 1.9485 44 1 5.2321 -1.7728 2.5849 45 1 3.5175 -1.3324 2.3997 46 1 3.9653 -2.8223 3.2645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106908474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:35 Heat of formation + Delta-G solvation = 82.372895 kcal Electronic energy + Delta-G solvation = -26340.383633 eV Core-core repulsion = 22777.973389 eV Total energy + Delta-G solvation = -3562.410244 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.77868 -39.21739 -37.06807 -35.27170 -33.59095 -32.79951 -32.09374 -31.18200 -28.58688 -27.81467 -27.24495 -25.92579 -23.61937 -22.93187 -21.75910 -21.42583 -20.67033 -19.20278 -18.22236 -16.91303 -16.88999 -16.70199 -16.03557 -15.34795 -15.11257 -14.75602 -14.61966 -14.46666 -14.31337 -13.97621 -13.47640 -13.24485 -13.03139 -12.89216 -12.82020 -12.49998 -12.45825 -12.38205 -12.14151 -12.11207 -11.72962 -11.53937 -11.33590 -11.31194 -11.24025 -11.19008 -11.00023 -10.66987 -10.36987 -10.12043 -9.91213 -9.73897 -9.63358 -9.31868 -9.06814 -8.86260 -8.61537 -8.31590 -6.10247 -4.10816 0.40885 0.97603 1.53713 2.46429 3.25660 3.34779 3.35417 3.44220 3.68570 3.78649 3.86383 4.07215 4.38397 4.61426 4.73613 4.83049 4.84625 4.94393 4.96347 5.12029 5.19723 5.21563 5.24671 5.27891 5.35375 5.42463 5.45583 5.48021 5.49225 5.60927 5.66126 5.74252 5.81860 5.83866 5.87323 5.94346 6.07114 6.19000 6.30956 6.48813 6.70382 6.92022 7.02061 7.04329 7.14563 7.45547 7.64208 8.41329 8.57815 8.93791 9.49569 11.02908 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.002455 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.931575 B =11401.048709 C =11657.891166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.077 3.923 3 C -0.277 4.277 4 S 0.156 5.844 5 C 0.225 3.775 6 N -0.460 5.460 7 C 0.066 3.934 8 C 0.060 3.940 9 N -0.543 5.543 10 C 0.061 3.939 11 C 0.023 3.977 12 H 0.104 0.896 13 C 0.254 3.746 14 N -0.472 5.472 15 C -0.005 4.005 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.877 3.123 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.060 3.940 25 C 0.092 3.908 26 H 0.071 0.929 27 C -0.146 4.146 28 N -0.495 5.495 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.175 0.825 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.032 0.968 41 H 0.264 0.736 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 28.744 -5.601 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.057 4.057 3 C -0.416 4.416 4 S 0.411 5.589 5 C -0.143 4.143 6 N -0.185 5.185 7 C -0.063 4.063 8 C -0.068 4.068 9 N -0.267 5.267 10 C -0.068 4.068 11 C 0.001 3.999 12 H 0.122 0.878 13 C -0.063 4.063 14 N -0.149 5.149 15 C -0.044 4.044 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.704 3.296 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.188 1.188 24 C -0.068 4.068 25 C -0.017 4.017 26 H 0.089 0.911 27 C -0.204 4.204 28 N -0.214 5.214 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.193 0.807 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.765 27.963 -6.283 28.907 hybrid contribution 0.388 -0.104 -0.090 0.412 sum -3.377 27.860 -6.373 28.778 Atomic orbital electron populations 1.20373 0.87248 1.03352 1.02943 1.20078 0.98087 0.86684 1.00818 1.26734 0.95523 1.03892 1.15463 1.83933 1.06082 1.01446 1.67480 1.24678 0.89461 0.97852 1.02314 1.60111 1.43115 1.09703 1.05598 1.22272 1.00194 0.94878 0.88914 1.22147 0.96907 0.92700 0.95093 1.62125 1.51719 1.10199 1.02701 1.22256 0.93170 0.90034 1.01294 1.18944 0.88480 0.94887 0.97608 0.87811 1.28695 0.93603 0.91446 0.92587 1.81007 1.12385 1.10811 1.10706 1.19642 0.93320 0.93140 0.98322 1.21023 1.05296 1.03040 1.27122 0.90784 1.24994 0.98088 0.95466 0.94587 1.69905 1.37901 1.09659 1.36044 0.86821 0.84636 0.77522 0.80598 1.20063 1.21335 1.18847 1.22306 0.97436 0.94439 0.92645 1.21817 0.99666 0.91194 0.89047 0.91138 1.21842 1.02382 1.00166 0.96007 1.66982 1.04919 1.32133 1.17360 0.90677 0.90542 0.90768 0.80723 0.90178 0.92081 0.93559 0.89602 0.90184 0.92358 0.95685 0.94967 0.92575 0.93353 0.88890 0.91635 0.93010 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.31 36.01 0.37 -0.21 16 2 C 0.08 0.76 6.74 -84.18 -0.57 0.19 16 3 C -0.28 -2.25 11.10 29.02 0.32 -1.93 16 4 S 0.16 1.36 23.22 -107.50 -2.50 -1.13 16 5 C 0.23 2.50 4.32 -87.69 -0.38 2.13 16 6 N -0.46 -5.11 4.61 -167.65 -0.77 -5.88 16 7 C 0.07 0.72 5.55 -3.77 -0.02 0.70 16 8 C 0.06 0.64 5.57 -3.77 -0.02 0.62 16 9 N -0.54 -6.90 4.34 -234.47 -1.02 -7.92 16 10 C 0.06 0.82 4.36 -3.82 -0.02 0.80 16 11 C 0.02 0.40 2.27 -93.41 -0.21 0.19 16 12 H 0.10 1.74 6.73 -51.93 -0.35 1.40 16 13 C 0.25 5.27 13.67 -20.75 -0.28 4.98 16 14 N -0.47 -10.84 18.54 42.16 0.78 -10.06 16 15 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 16 C -0.53 -14.12 9.15 -34.44 -0.32 -14.44 16 17 H 0.07 2.19 7.84 -52.49 -0.41 1.78 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 20 Si 0.88 20.52 27.47 -169.99 -4.67 15.86 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 24 C 0.06 0.70 4.72 -3.76 -0.02 0.68 16 25 C 0.09 1.06 2.42 -67.66 -0.16 0.90 16 26 H 0.07 1.00 8.05 -51.93 -0.42 0.58 16 27 C -0.15 -1.47 9.10 37.16 0.34 -1.13 16 28 N -0.49 -6.02 10.34 -11.36 -0.12 -6.13 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.08 0.76 8.13 -51.92 -0.42 0.34 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.87 8.00 -51.93 -0.42 0.46 16 37 H 0.08 1.05 7.84 -51.93 -0.41 0.64 16 38 H 0.06 0.69 8.00 -51.93 -0.42 0.28 16 39 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 40 H 0.03 0.63 7.57 -51.93 -0.39 0.23 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.10 6.71 -51.93 -0.35 0.75 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.56 6.99 -51.93 -0.36 0.19 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -32.50 385.99 -10.15 -42.65 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -7.29 Total: -2.07 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.16 Total: -4.85 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.35 Total: -56.27 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.86 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.50 Total: -1.13 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.50 -10.15 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106908474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.018 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds