Wall clock time and date at job start Tue Mar 31 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33328 * 122.71057 * 2 1 4 4 S 1.76157 * 108.09742 * 180.02562 * 3 2 1 5 5 C 1.70968 * 90.35911 * 359.97438 * 4 3 2 6 6 N 1.38600 * 124.95060 * 179.97438 * 5 4 3 7 7 C 1.46962 * 111.00140 * 248.81091 * 6 5 4 8 8 C 1.53044 * 109.36468 * 176.80994 * 7 6 5 9 9 N 1.46956 * 109.36560 * 58.40743 * 8 7 6 10 10 C 1.46897 * 111.00033 * 176.80776 * 9 8 7 11 11 C 1.53002 * 109.47117 * 199.45355 * 10 9 8 12 12 H 1.09003 * 109.46935 * 305.04785 * 11 10 9 13 13 C 1.47198 * 109.47183 * 65.04810 * 11 10 9 14 14 N 8.21910 * 103.71579 * 183.18751 * 2 1 3 15 15 C 1.53000 * 109.47384 * 185.04826 * 11 10 9 16 16 C 1.50699 * 109.47100 * 175.00033 * 15 11 10 17 17 H 1.07993 * 120.00198 * 359.97438 * 16 15 11 18 18 C 1.37881 * 119.99892 * 180.02562 * 16 15 11 19 19 N 1.31509 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 119.99931 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47265 * 89.99889 * 20 18 16 22 22 H 1.48502 * 109.47150 * 210.00558 * 20 18 16 23 23 H 1.48506 * 109.47112 * 329.99733 * 20 18 16 24 24 C 1.46959 * 110.87651 * 300.67330 * 9 8 7 25 25 C 1.46956 * 111.00167 * 125.01209 * 6 5 4 26 26 H 1.09004 * 109.48546 * 63.21886 * 25 6 5 27 27 C 1.52998 * 109.48940 * 303.15572 * 25 6 5 28 28 N 1.29691 * 110.09673 * 0.24506 * 5 4 3 29 29 H 1.09001 * 109.46990 * 90.02256 * 1 2 3 30 30 H 1.09002 * 109.47032 * 210.02542 * 1 2 3 31 31 H 1.09001 * 109.47317 * 330.02588 * 1 2 3 32 32 H 1.07999 * 125.95082 * 359.97438 * 3 2 1 33 33 H 1.09008 * 109.48701 * 56.84671 * 7 6 5 34 34 H 1.08998 * 109.48929 * 296.78727 * 7 6 5 35 35 H 1.08996 * 109.49547 * 298.43411 * 8 7 6 36 36 H 1.09005 * 109.50545 * 178.37922 * 8 7 6 37 37 H 1.08997 * 109.47234 * 319.45593 * 10 9 8 38 38 H 1.08997 * 109.47013 * 79.45871 * 10 9 8 39 39 H 1.08997 * 109.47301 * 295.00271 * 15 11 10 40 40 H 1.09001 * 109.46533 * 55.00455 * 15 11 10 41 41 H 0.97002 * 119.99907 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.48991 * 299.35546 * 24 9 8 43 43 H 1.08999 * 109.48777 * 179.28754 * 24 9 8 44 44 H 1.08994 * 109.47020 * 295.80752 * 27 25 6 45 45 H 1.08995 * 109.47064 * 55.81100 * 27 25 6 46 46 H 1.09004 * 109.47044 * 175.80728 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2275 1.1218 0.0000 4 16 3.9321 0.6774 -0.0007 5 6 3.5111 -0.9796 -0.0002 6 7 4.4167 -2.0289 -0.0010 7 6 4.3842 -2.7517 -1.2801 8 6 5.4508 -3.8492 -1.2701 9 7 5.2000 -4.7622 -0.1461 10 6 6.1598 -5.8743 -0.1470 11 6 5.6050 -7.0273 0.6919 12 1 5.3595 -6.6650 1.6902 13 6 4.3918 -7.5608 0.0513 14 7 3.4558 -7.9724 -0.4440 15 6 6.6560 -8.1345 0.7954 16 6 6.1583 -9.2145 1.7211 17 1 5.1897 -9.1205 2.1891 18 6 6.9403 -10.3222 1.9713 19 7 6.5062 -11.2645 2.7795 20 14 8.6167 -10.4838 1.1634 21 1 9.6481 -9.8668 2.0356 22 1 8.9331 -11.9208 0.9628 23 1 8.6016 -9.7924 -0.1508 24 6 5.2325 -4.0394 1.1330 25 6 4.1659 -2.9418 1.1230 26 1 3.1802 -3.3936 1.0115 27 6 4.2244 -2.1612 2.4375 28 7 2.2209 -1.1117 -0.0048 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 1.8345 2.1278 -0.0004 33 1 4.5851 -2.0569 -2.0957 34 1 3.4010 -3.2013 -1.4189 35 1 6.4365 -3.3975 -1.1586 36 1 5.4095 -4.4055 -2.2066 37 1 6.3212 -6.2141 -1.1700 38 1 7.1056 -5.5382 0.2778 39 1 6.8365 -8.5576 -0.1928 40 1 7.5841 -7.7188 1.1878 41 1 7.0562 -12.0440 2.9552 42 1 6.2157 -3.5898 1.2717 43 1 5.0317 -4.7342 1.9485 44 1 5.2321 -1.7728 2.5849 45 1 3.5175 -1.3324 2.3997 46 1 3.9653 -2.8223 3.2645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106908474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:34 Heat of formation + Delta-G solvation = 60.384250 kcal Electronic energy + Delta-G solvation = -26341.337132 eV Core-core repulsion = 22777.973389 eV Total energy + Delta-G solvation = -3563.363743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.57685 -40.09015 -38.38239 -36.55306 -35.35886 -33.73520 -33.63857 -32.12031 -29.77126 -28.51656 -28.30438 -27.13486 -24.56167 -24.00753 -23.17242 -22.69602 -21.48487 -19.99160 -18.98611 -18.87837 -18.30497 -17.55319 -16.95164 -16.57592 -16.09531 -15.85843 -15.69287 -15.49016 -15.32488 -15.06516 -14.73419 -14.53386 -14.24271 -14.00586 -13.84062 -13.66591 -13.50797 -13.39019 -13.21948 -13.12970 -13.04483 -12.87360 -12.62064 -12.41579 -12.24686 -12.19541 -12.12352 -12.02767 -11.83767 -11.59980 -11.43951 -11.21017 -10.86315 -10.71112 -10.34989 -9.90429 -9.57997 -9.23351 -8.22791 -6.28459 -0.30797 0.27804 0.83967 1.44122 1.47575 1.57733 1.73182 2.06812 2.14948 2.43038 2.66160 2.83976 3.13822 3.34433 3.35540 3.77452 3.85971 4.06718 4.19559 4.25784 4.27713 4.32286 4.37753 4.40556 4.41087 4.59272 4.65129 4.70574 4.72569 4.73791 4.77488 4.83606 4.85063 4.91752 4.92858 4.99417 5.06727 5.20884 5.25746 5.27284 5.47199 5.61955 5.65606 5.86588 6.09886 6.14007 6.29080 6.74915 6.79316 6.92961 7.35932 8.94359 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.023604 B = 0.002455 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.931575 B =11401.048709 C =11657.891166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.049 3.951 3 C -0.264 4.264 4 S 0.194 5.806 5 C 0.197 3.803 6 N -0.454 5.454 7 C 0.070 3.930 8 C 0.065 3.935 9 N -0.564 5.564 10 C 0.072 3.928 11 C 0.027 3.973 12 H 0.110 0.890 13 C 0.265 3.735 14 N -0.521 5.521 15 C -0.002 4.002 16 C -0.530 4.530 17 H 0.026 0.974 18 C 0.001 3.999 19 N -0.956 5.956 20 Si 0.950 3.050 21 H -0.256 1.256 22 H -0.297 1.297 23 H -0.235 1.235 24 C 0.063 3.937 25 C 0.096 3.904 26 H 0.034 0.966 27 C -0.138 4.138 28 N -0.528 5.528 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.206 0.794 33 H 0.095 0.905 34 H 0.029 0.971 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.028 0.972 40 H 0.065 0.935 41 H 0.264 0.736 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.042 0.958 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 31.932 -6.758 32.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 C -0.403 4.403 4 S 0.449 5.551 5 C -0.170 4.170 6 N -0.178 5.178 7 C -0.059 4.059 8 C -0.063 4.063 9 N -0.289 5.289 10 C -0.056 4.056 11 C 0.005 3.995 12 H 0.127 0.873 13 C -0.051 4.051 14 N -0.198 5.198 15 C -0.041 4.041 16 C -0.568 4.568 17 H 0.044 0.956 18 C -0.195 4.195 19 N -0.597 5.597 20 Si 0.773 3.227 21 H -0.180 1.180 22 H -0.224 1.224 23 H -0.158 1.158 24 C -0.065 4.065 25 C -0.013 4.013 26 H 0.052 0.948 27 C -0.196 4.196 28 N -0.248 5.248 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.223 0.777 33 H 0.113 0.887 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.074 31.196 -7.452 32.091 hybrid contribution -0.614 -1.015 0.322 1.229 sum -1.688 30.181 -7.129 31.058 Atomic orbital electron populations 1.20419 0.86018 1.03763 1.03405 1.20454 0.99156 0.86735 1.02029 1.27149 0.95228 1.04805 1.13100 1.83723 1.06068 0.98975 1.66380 1.24874 0.89468 0.98912 1.03792 1.60219 1.42957 1.09439 1.05211 1.22231 0.98746 0.95291 0.89638 1.22153 0.97481 0.92199 0.94427 1.62002 1.52194 1.10938 1.03773 1.22122 0.93885 0.88607 1.00998 1.19080 0.86280 0.95405 0.98736 0.87259 1.29475 0.93777 0.90329 0.91546 1.81001 1.13901 1.12301 1.12621 1.19585 0.95212 0.92423 0.96866 1.21402 1.03368 1.04799 1.27261 0.95582 1.26071 1.03116 0.95019 0.95321 1.70098 1.40108 1.10785 1.38672 0.85666 0.78885 0.77271 0.80906 1.18043 1.22395 1.15790 1.22287 0.98100 0.94141 0.91985 1.21691 0.97854 0.91599 0.90187 0.94814 1.21769 1.02861 0.99679 0.95260 1.66949 1.05908 1.33940 1.18004 0.90171 0.92149 0.88316 0.77659 0.88676 0.95213 0.91665 0.89108 0.89362 0.89384 0.95325 0.91718 0.92711 0.91549 0.89642 0.90260 0.93924 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.31 71.24 0.73 -0.35 16 2 C 0.05 0.93 6.74 41.40 0.28 1.21 16 3 C -0.26 -3.70 11.10 66.71 0.74 -2.96 16 4 S 0.19 2.98 23.22 -56.49 -1.31 1.67 16 5 C 0.20 4.24 4.32 179.32 0.77 5.01 16 6 N -0.45 -9.65 4.61 -684.33 -3.16 -12.81 16 7 C 0.07 1.47 5.55 86.31 0.48 1.95 16 8 C 0.07 1.25 5.57 86.31 0.48 1.73 16 9 N -0.56 -13.37 4.34 -895.73 -3.89 -17.26 16 10 C 0.07 1.72 4.36 86.30 0.38 2.10 16 11 C 0.03 0.91 2.27 -12.60 -0.03 0.88 16 12 H 0.11 3.59 6.73 -2.39 -0.02 3.57 16 13 C 0.26 11.08 13.67 89.44 1.22 12.30 16 14 N -0.52 -24.55 18.54 20.01 0.37 -24.18 16 15 C 0.00 -0.07 3.49 29.85 0.10 0.03 16 16 C -0.53 -28.69 9.15 25.60 0.23 -28.46 16 17 H 0.03 1.61 7.84 -2.91 -0.02 1.58 16 18 C 0.00 0.06 5.47 84.66 0.46 0.53 16 19 N -0.96 -59.49 13.96 21.45 0.30 -59.19 16 20 Si 0.95 41.22 27.47 68.60 1.88 43.10 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.24 -9.03 6.54 99.48 0.65 -8.38 16 24 C 0.06 1.36 4.72 86.31 0.41 1.77 16 25 C 0.10 2.21 2.42 44.92 0.11 2.32 16 26 H 0.03 1.01 8.05 -2.39 -0.02 0.99 16 27 C -0.14 -2.68 9.10 71.98 0.65 -2.02 16 28 N -0.53 -12.96 10.34 -189.87 -1.96 -14.92 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 0.85 8.12 -2.39 -0.02 0.83 16 32 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.09 1.68 8.13 -2.38 -0.02 1.66 16 34 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.65 8.00 -2.38 -0.02 1.63 16 37 H 0.09 2.00 7.84 -2.39 -0.02 1.98 16 38 H 0.09 1.64 8.00 -2.39 -0.02 1.62 16 39 H 0.03 1.14 7.20 -2.39 -0.02 1.12 16 40 H 0.06 2.23 7.57 -2.39 -0.02 2.21 16 41 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.94 6.71 -2.39 -0.02 1.93 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.04 0.90 6.99 -2.39 -0.02 0.88 16 46 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -74.60 385.99 0.18 -74.42 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.91 Total: 13.13 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 7.03 Total: -3.96 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -8.34 Total: -128.35 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.88 Total: 43.10 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.31 Total: 1.67 kcal Total: -74.60 0.18 -74.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106908474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.805 kcal (2) G-P(sol) polarization free energy of solvation -74.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds