Wall clock time and date at job start Tue Mar 31 2020 04:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31459 * 1 3 3 Si 1.86804 * 119.99949 * 2 1 4 4 H 1.48494 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46872 * 299.99480 * 3 2 1 6 6 H 1.48498 * 109.46857 * 59.99424 * 3 2 1 7 7 C 1.38807 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00046 * 168.99977 * 7 2 1 9 9 N 1.37065 * 119.99857 * 349.00905 * 7 2 1 10 10 C 1.36254 * 124.87733 * 338.25235 * 9 7 2 11 11 C 1.36284 * 109.70305 * 180.26818 * 10 9 7 12 12 C 1.46931 * 126.70288 * 180.02562 * 11 10 9 13 13 N 1.30073 * 120.00292 * 179.97438 * 12 11 10 14 14 N 1.40093 * 120.00243 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00155 * 179.97438 * 14 13 12 16 16 O 1.21616 * 120.00004 * 0.02562 * 15 14 13 17 17 C 1.47780 * 120.00345 * 180.02562 * 15 14 13 18 18 C 1.39607 * 120.14689 * 359.72101 * 17 15 14 19 19 C 1.37946 * 119.85180 * 179.81557 * 18 17 15 20 20 C 1.38363 * 120.14964 * 0.44185 * 19 18 17 21 21 C 1.38372 * 120.29421 * 359.79413 * 20 19 18 22 22 C 1.37940 * 120.15010 * 359.97438 * 21 20 19 23 23 C 1.47572 * 106.59312 * 359.97438 * 11 10 9 24 24 C 1.39194 * 133.90396 * 180.02562 * 23 11 10 25 25 C 1.37907 * 119.68094 * 179.97438 * 24 23 11 26 26 C 1.38673 * 120.29092 * 0.02562 * 25 24 23 27 27 C 1.37929 * 120.60706 * 0.02562 * 26 25 24 28 28 C 1.38339 * 124.87485 * 158.55184 * 9 7 2 29 29 H 0.97003 * 120.00055 * 0.02562 * 1 2 3 30 30 H 1.08000 * 125.14329 * 0.26330 * 10 9 7 31 31 H 1.08002 * 119.99794 * 359.97438 * 12 11 10 32 32 H 0.97005 * 120.00105 * 0.02562 * 14 13 12 33 33 H 1.08001 * 120.07281 * 0.02562 * 18 17 15 34 34 H 1.08004 * 119.92996 * 180.23593 * 19 18 17 35 35 H 1.07995 * 119.85350 * 179.76198 * 20 19 18 36 36 H 1.08005 * 119.92242 * 179.97438 * 21 20 19 37 37 H 1.08005 * 120.07912 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.15856 * 0.02562 * 24 23 11 39 39 H 1.07999 * 119.85363 * 180.02562 * 25 24 23 40 40 H 1.08002 * 119.69340 * 180.02562 * 26 25 24 41 41 H 1.08001 * 120.02855 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 3.7085 1.3465 0.0006 5 1 1.8899 2.3964 -1.2126 6 1 1.8897 2.3965 1.2124 7 6 2.0087 -1.2021 0.0005 8 1 3.0738 -1.2107 -0.1779 9 7 1.3422 -2.3781 0.2274 10 6 0.1408 -2.4830 0.8616 11 6 -0.2334 -3.7920 0.9233 12 6 -1.4622 -4.3266 1.5259 13 7 -1.6899 -5.6072 1.5114 14 7 -2.8618 -6.1168 2.0856 15 6 -3.0980 -7.4436 2.0701 16 8 -2.2936 -8.1985 1.5581 17 6 -4.3344 -7.9812 2.6752 18 6 -5.2572 -7.1180 3.2689 19 6 -6.4112 -7.6260 3.8285 20 6 -6.6508 -8.9886 3.8105 21 6 -5.7381 -9.8502 3.2281 22 6 -4.5824 -9.3550 2.6606 23 6 0.8360 -4.5675 0.2655 24 6 1.0314 -5.9228 0.0154 25 6 2.1702 -6.3388 -0.6418 26 6 3.1182 -5.4136 -1.0523 27 6 2.9373 -4.0679 -0.8098 28 6 1.7955 -3.6296 -0.1495 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4285 -1.6543 1.2558 31 1 -2.1763 -3.6562 1.9809 32 1 -3.5036 -5.5146 2.4936 33 1 -5.0696 -6.0545 3.2869 34 1 -7.1277 -6.9590 4.2847 35 1 -7.5540 -9.3815 4.2534 36 1 -5.9310 -10.9128 3.2177 37 1 -3.8705 -10.0286 2.2067 38 1 0.2942 -6.6451 0.3338 39 1 2.3244 -7.3896 -0.8376 40 1 4.0063 -5.7500 -1.5666 41 1 3.6814 -3.3555 -1.1340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107593711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:16 Heat of formation + Delta-G solvation = 76.063371 kcal Electronic energy + Delta-G solvation = -25998.377029 eV Core-core repulsion = 22229.842048 eV Total energy + Delta-G solvation = -3768.534981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.122 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91104 -41.12440 -39.21469 -37.86593 -37.42326 -35.17096 -33.96462 -32.57098 -31.91205 -31.24670 -30.41973 -29.55390 -27.07023 -25.21446 -23.82426 -23.33347 -23.20984 -22.23903 -21.56752 -20.63341 -19.46469 -19.03626 -18.02516 -17.42626 -17.14981 -16.60582 -16.32724 -16.20480 -16.18512 -15.90682 -15.52746 -15.37754 -14.87448 -14.78771 -14.60091 -14.38304 -13.99106 -13.77581 -13.61512 -13.27961 -13.17224 -12.95870 -12.88179 -12.62316 -12.33772 -12.22622 -12.07704 -12.04479 -11.68090 -11.19239 -11.16606 -10.79242 -10.66658 -10.02766 -9.97331 -9.67789 -8.96199 -8.73816 -8.25881 -6.28191 -0.23345 0.30265 0.39571 0.75760 1.09720 1.40755 1.47469 1.55827 1.59004 1.90417 2.12444 2.44254 2.88494 2.92668 2.98289 3.29909 3.51174 3.85555 3.89454 3.98910 4.09737 4.19871 4.27318 4.37431 4.44682 4.46173 4.51027 4.69671 4.76616 4.82872 4.90074 5.04311 5.04638 5.20879 5.28124 5.32090 5.34660 5.41457 5.43167 5.48687 5.69439 5.79313 5.92786 5.93427 6.16210 6.22630 6.34426 6.51552 6.63731 7.01563 7.43163 7.53586 8.38025 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.015697 B = 0.002549 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.394524 B =10981.687000 C =12711.601709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.007 3.993 3 Si 1.012 2.988 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.370 4.370 8 H 0.111 0.889 9 N -0.291 5.291 10 C 0.118 3.882 11 C -0.251 4.251 12 C 0.192 3.808 13 N -0.314 5.314 14 N -0.572 5.572 15 C 0.565 3.435 16 O -0.564 6.564 17 C -0.151 4.151 18 C -0.090 4.090 19 C -0.125 4.125 20 C -0.087 4.087 21 C -0.127 4.127 22 C -0.078 4.078 23 C -0.096 4.096 24 C -0.092 4.092 25 C -0.157 4.157 26 C -0.124 4.124 27 C -0.122 4.122 28 C 0.016 3.984 29 H 0.289 0.711 30 H 0.179 0.821 31 H 0.140 0.860 32 H 0.394 0.606 33 H 0.141 0.859 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.150 0.850 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.067 -7.960 7.853 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.199 4.199 3 Si 0.833 3.167 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.497 4.497 8 H 0.129 0.871 9 N 0.047 4.953 10 C -0.027 4.027 11 C -0.261 4.261 12 C -0.013 4.013 13 N -0.121 5.121 14 N -0.314 5.314 15 C 0.355 3.645 16 O -0.442 6.442 17 C -0.155 4.155 18 C -0.109 4.109 19 C -0.142 4.142 20 C -0.104 4.104 21 C -0.145 4.145 22 C -0.098 4.098 23 C -0.102 4.102 24 C -0.111 4.111 25 C -0.176 4.176 26 C -0.143 4.143 27 C -0.142 4.142 28 C -0.091 4.091 29 H 0.099 0.901 30 H 0.196 0.804 31 H 0.157 0.843 32 H 0.235 0.765 33 H 0.159 0.841 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.172 0.828 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.155 0.845 40 H 0.168 0.832 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.283 -8.983 7.200 16.119 hybrid contribution -0.253 1.875 0.176 1.900 sum -11.536 -7.108 7.376 15.427 Atomic orbital electron populations 1.69925 1.07514 1.30376 1.42771 1.26447 0.96581 1.03439 0.93451 0.84597 0.78492 0.75043 0.78603 1.18237 1.19690 1.18946 1.20266 0.94697 0.82575 1.52128 0.87134 1.40251 1.14946 1.04257 1.35816 1.22259 0.88590 0.95930 0.95904 1.18257 0.97798 0.91797 1.18284 1.23607 0.94177 0.90853 0.92697 1.75285 1.03615 1.15529 1.17665 1.46682 1.19297 1.08001 1.57439 1.18725 0.86572 0.80358 0.78834 1.90736 1.48983 1.58182 1.46342 1.19780 0.94671 0.95805 1.05285 1.21589 0.93734 0.99859 0.95692 1.21531 0.96849 0.96560 0.99278 1.21868 0.99498 0.93295 0.95789 1.21472 0.93077 1.01897 0.98021 1.21380 0.97958 0.93453 0.96972 1.19127 0.95022 0.93136 1.02879 1.20609 0.97945 0.93448 0.99122 1.21078 0.94686 1.00072 1.01798 1.20935 1.00284 0.91128 1.01970 1.20237 0.95759 0.96696 1.01515 1.18945 0.98891 0.85552 1.05704 0.90068 0.80449 0.84290 0.76512 0.84119 0.82105 0.81997 0.82760 0.86123 0.87198 0.84525 0.83204 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.07 10.86 21.64 0.24 -41.84 16 2 C 0.01 0.33 5.34 84.88 0.45 0.79 16 3 Si 1.01 36.12 29.57 68.60 2.03 38.15 16 4 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 6 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 7 C -0.37 -18.49 9.89 84.01 0.83 -17.66 16 8 H 0.11 5.29 7.85 -2.91 -0.02 5.27 16 9 N -0.29 -14.97 2.89 -342.07 -0.99 -15.96 16 10 C 0.12 5.73 9.85 83.55 0.82 6.56 16 11 C -0.25 -11.74 6.27 -18.99 -0.12 -11.86 16 12 C 0.19 7.54 10.98 87.23 0.96 8.50 16 13 N -0.31 -12.96 9.81 -52.43 -0.51 -13.47 16 14 N -0.57 -18.94 6.22 -175.60 -1.09 -20.04 16 15 C 0.57 19.84 7.89 86.77 0.68 20.52 16 16 O -0.56 -25.13 16.69 -4.08 -0.07 -25.20 16 17 C -0.15 -3.85 5.87 -20.09 -0.12 -3.97 16 18 C -0.09 -1.59 9.54 22.53 0.21 -1.38 16 19 C -0.12 -1.52 10.03 22.23 0.22 -1.30 16 20 C -0.09 -0.97 10.04 22.33 0.22 -0.74 16 21 C -0.13 -1.90 10.03 22.23 0.22 -1.68 16 22 C -0.08 -1.81 9.60 22.53 0.22 -1.59 16 23 C -0.10 -4.75 6.25 -20.05 -0.13 -4.88 16 24 C -0.09 -4.26 9.81 22.42 0.22 -4.04 16 25 C -0.16 -6.19 10.03 22.30 0.22 -5.96 16 26 C -0.12 -4.63 10.02 22.30 0.22 -4.40 16 27 C -0.12 -5.27 9.93 22.38 0.22 -5.05 16 28 C 0.02 0.81 6.73 38.83 0.26 1.07 16 29 H 0.29 12.65 8.31 -92.71 -0.77 11.88 16 30 H 0.18 8.41 6.35 -2.91 -0.02 8.39 16 31 H 0.14 4.21 8.03 -2.91 -0.02 4.18 16 32 H 0.39 9.45 6.69 -213.32 -1.43 8.02 16 33 H 0.14 1.90 6.41 -2.91 -0.02 1.88 16 34 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 36 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.12 3.07 7.65 -2.91 -0.02 3.05 16 38 H 0.11 5.30 7.23 -2.91 -0.02 5.28 16 39 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 41 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -71.30 362.34 4.90 -66.41 By element: Atomic # 1 Polarization: 39.38 SS G_CDS: -0.34 Total: 39.03 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 5.64 Total: -27.07 kcal Atomic # 7 Polarization: -88.95 SS G_CDS: -2.36 Total: -91.31 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.07 Total: -25.20 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Total: -71.30 4.90 -66.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107593711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.469 kcal (2) G-P(sol) polarization free energy of solvation -71.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds