Wall clock time and date at job start Tue Mar 31 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08992 * 109.46773 * 2 1 4 4 C 1.50701 * 109.47050 * 239.99939 * 2 1 3 5 5 H 1.08005 * 119.99737 * 240.00106 * 4 2 1 6 6 C 1.37872 * 120.00392 * 59.99747 * 4 2 1 7 7 N 1.31521 * 119.99359 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00495 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47145 * 59.99860 * 8 6 4 10 10 H 1.48494 * 109.47379 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46691 * 300.00340 * 8 6 4 12 12 N 1.46501 * 109.47015 * 119.99946 * 2 1 3 13 13 C 1.46496 * 119.99977 * 59.99557 * 12 2 1 14 14 C 1.34772 * 119.99689 * 240.00362 * 12 2 1 15 15 O 1.21553 * 120.00398 * 4.30906 * 14 12 2 16 16 C 1.47857 * 119.99809 * 184.31755 * 14 12 2 17 17 C 1.39581 * 120.13572 * 328.17165 * 16 14 12 18 18 C 1.38056 * 119.83982 * 179.97438 * 17 16 14 19 19 Cl 1.73603 * 119.94108 * 179.97438 * 18 17 16 20 20 C 1.38492 * 120.11370 * 359.97438 * 18 17 16 21 21 C 1.38314 * 120.28512 * 0.02562 * 20 18 17 22 22 C 1.50700 * 119.92125 * 180.02562 * 21 20 18 23 23 F 1.39905 * 109.46521 * 269.99475 * 22 21 20 24 24 F 1.39895 * 109.47044 * 29.99503 * 22 21 20 25 25 F 1.39893 * 109.46934 * 149.99769 * 22 21 20 26 26 C 1.37988 * 120.15670 * 359.97438 * 21 20 18 27 27 H 1.09002 * 109.46888 * 300.00386 * 1 2 3 28 28 H 1.08999 * 109.46800 * 60.00168 * 1 2 3 29 29 H 1.08992 * 109.46773 * 180.02562 * 1 2 3 30 30 H 0.97007 * 119.99581 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.47612 * 274.39867 * 13 12 2 32 32 H 1.09003 * 109.47344 * 34.40085 * 13 12 2 33 33 H 1.09006 * 109.47189 * 154.39300 * 13 12 2 34 34 H 1.07999 * 120.07727 * 359.95792 * 17 16 14 35 35 H 1.08010 * 119.85547 * 180.02562 * 20 18 17 36 36 H 1.08001 * 120.06008 * 180.28199 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6033 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8269 -0.4201 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.0224 1.1486 1.9322 16 6 3.3645 -0.7574 3.2404 17 6 2.6675 -1.8204 3.8169 18 6 3.2070 -2.4904 4.8967 19 17 2.3421 -3.8126 5.6162 20 6 4.4369 -2.1097 5.4069 21 6 5.1318 -1.0570 4.8394 22 6 6.4698 -0.6499 5.4008 23 9 6.2835 0.3153 6.3963 24 9 7.1053 -1.7690 5.9493 25 9 7.2623 -0.1181 4.3781 26 6 4.6034 -0.3793 3.7598 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 0.7095 1.1617 -3.4844 31 1 0.6987 -2.1458 1.9308 32 1 1.6060 -2.6158 0.4733 33 1 2.4252 -2.5615 2.0526 34 1 1.7084 -2.1179 3.4193 35 1 4.8552 -2.6371 6.2516 36 1 5.1494 0.4395 3.3151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126364708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:43 Heat of formation + Delta-G solvation = -148.123996 kcal Electronic energy + Delta-G solvation = -26591.170944 eV Core-core repulsion = 22073.187556 eV Total energy + Delta-G solvation = -4517.983388 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.064 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.37861 -47.89417 -47.82629 -40.47094 -38.49492 -36.80923 -35.61703 -33.48189 -32.16549 -31.29844 -29.34366 -26.95089 -26.03929 -25.31972 -24.22639 -22.46383 -21.29403 -19.50675 -18.70410 -18.60722 -18.09741 -17.02205 -16.47684 -16.33624 -15.81420 -15.44835 -15.11094 -14.76127 -14.68225 -14.47441 -14.26418 -14.21097 -13.98512 -13.98079 -13.75582 -13.23925 -13.22903 -12.63142 -12.56217 -12.31660 -11.96061 -11.90966 -11.68355 -11.43805 -11.19675 -11.09690 -10.90934 -10.80287 -10.36765 -10.24377 -9.57069 -9.31944 -9.24396 -9.15280 -8.51021 -7.80369 -6.15463 -4.24449 0.38906 0.59542 1.65638 2.39070 2.68381 3.23385 3.28561 3.29249 3.36204 3.51191 3.64878 3.87490 4.17440 4.31669 4.39511 4.58788 4.65090 4.78340 5.05573 5.12941 5.16886 5.45474 5.60823 5.65540 5.77044 5.85351 6.09925 6.21602 6.65352 6.71969 6.94059 7.22619 7.38637 7.60934 7.89686 8.06669 8.31073 8.64493 8.83057 9.42253 10.89850 Molecular weight = 335.06amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.003468 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.603239 B = 8072.381888 C = 9067.817848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.066 0.934 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.578 5.578 13 C 0.062 3.938 14 C 0.544 3.456 15 O -0.537 6.537 16 C -0.103 4.103 17 C -0.062 4.062 18 C -0.048 4.048 19 Cl -0.053 7.053 20 C -0.050 4.050 21 C -0.183 4.183 22 C 0.515 3.485 23 F -0.173 7.173 24 F -0.176 7.176 25 F -0.171 7.171 26 C -0.014 4.014 27 H 0.013 0.987 28 H 0.095 0.905 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.166 0.834 35 H 0.148 0.852 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.316 -8.423 16.890 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.308 5.308 13 C -0.081 4.081 14 C 0.330 3.670 15 O -0.416 6.416 16 C -0.106 4.106 17 C -0.081 4.081 18 C -0.075 4.075 19 Cl -0.024 7.024 20 C -0.069 4.069 21 C -0.184 4.184 22 C 0.460 3.540 23 F -0.155 7.155 24 F -0.157 7.157 25 F -0.152 7.152 26 C -0.033 4.033 27 H 0.032 0.968 28 H 0.114 0.886 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.183 0.817 35 H 0.166 0.834 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.270 -7.779 16.685 19.149 hybrid contribution 0.443 -0.682 -0.681 1.061 sum 5.713 -8.461 16.004 18.983 Atomic orbital electron populations 1.22092 0.97817 0.99564 1.01061 1.19054 0.91159 0.94553 0.79376 0.91593 1.21239 1.32304 1.13260 0.90161 0.92163 1.24880 0.94803 0.94933 0.98984 1.69869 1.36004 1.22409 1.24055 0.86528 0.79278 0.79568 0.81875 1.20171 1.21101 1.20189 1.48214 1.47748 1.11570 1.23250 1.22266 0.98798 0.83657 1.03368 1.17954 0.80075 0.86830 0.82107 1.90779 1.60771 1.14741 1.75313 1.20206 0.95434 0.96738 0.98251 1.22211 1.01398 0.92293 0.92191 1.20613 0.94644 0.94708 0.97489 1.98395 1.75931 1.45471 1.82583 1.20866 0.92579 0.94523 0.98898 1.19755 0.95707 1.01648 1.01318 1.18064 0.85071 0.74910 0.75919 1.93245 1.95322 1.64364 1.62532 1.93194 1.83879 1.52338 1.86315 1.93230 1.76160 1.86656 1.59179 1.21126 0.93779 0.96794 0.91633 0.96836 0.88617 0.95024 0.92487 0.92856 0.89628 0.91437 0.81714 0.83433 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.97 37.16 0.33 -3.01 16 2 C 0.26 6.28 2.63 -69.08 -0.18 6.10 16 3 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 4 C -0.53 -13.72 8.03 -34.44 -0.28 -13.99 16 5 H 0.06 1.52 7.26 -52.48 -0.38 1.14 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.58 -11.58 2.75 -176.37 -0.49 -12.07 16 13 C 0.06 0.95 7.83 59.84 0.47 1.42 16 14 C 0.54 10.74 7.44 -12.33 -0.09 10.64 16 15 O -0.54 -12.64 16.09 5.32 0.09 -12.55 16 16 C -0.10 -1.54 5.47 -104.97 -0.57 -2.11 16 17 C -0.06 -0.75 7.22 -39.15 -0.28 -1.04 16 18 C -0.05 -0.51 6.31 -39.55 -0.25 -0.76 16 19 Cl -0.05 -0.49 28.95 -51.86 -1.50 -1.99 16 20 C -0.05 -0.50 9.18 -39.46 -0.36 -0.87 16 21 C -0.18 -2.10 5.45 -104.69 -0.57 -2.67 16 22 C 0.51 5.70 3.36 36.01 0.12 5.82 16 23 F -0.17 -1.98 17.30 2.25 0.04 -1.94 16 24 F -0.18 -1.83 16.45 2.25 0.04 -1.79 16 25 F -0.17 -2.06 16.45 2.25 0.04 -2.02 16 26 C -0.01 -0.20 8.95 -39.18 -0.35 -0.55 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 29 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.05 0.70 7.43 -51.93 -0.39 0.31 16 32 H 0.09 1.40 6.97 -51.93 -0.36 1.04 16 33 H 0.07 0.87 4.72 -51.93 -0.25 0.62 16 34 H 0.17 1.84 4.79 -52.49 -0.25 1.59 16 35 H 0.15 1.18 7.59 -52.48 -0.40 0.78 16 36 H 0.15 2.14 7.49 -52.49 -0.39 1.75 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -28.72 329.68 -6.37 -35.09 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -3.05 Total: -0.10 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -2.11 Total: 0.65 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.14 Total: -35.69 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.11 Total: -5.75 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.72 -6.37 -35.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126364708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.031 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds