Wall clock time and date at job start Tue Mar 31 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08992 * 109.46773 * 2 1 4 4 C 1.50701 * 109.47050 * 239.99939 * 2 1 3 5 5 H 1.08005 * 119.99737 * 240.00106 * 4 2 1 6 6 C 1.37872 * 120.00392 * 59.99747 * 4 2 1 7 7 N 1.31521 * 119.99359 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00495 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47145 * 59.99860 * 8 6 4 10 10 H 1.48494 * 109.47379 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46691 * 300.00340 * 8 6 4 12 12 N 1.46501 * 109.47015 * 119.99946 * 2 1 3 13 13 C 1.46496 * 119.99977 * 59.99557 * 12 2 1 14 14 C 1.34772 * 119.99689 * 240.00362 * 12 2 1 15 15 O 1.21553 * 120.00398 * 4.30906 * 14 12 2 16 16 C 1.47857 * 119.99809 * 184.31755 * 14 12 2 17 17 C 1.39581 * 120.13572 * 328.17165 * 16 14 12 18 18 C 1.38056 * 119.83982 * 179.97438 * 17 16 14 19 19 Cl 1.73603 * 119.94108 * 179.97438 * 18 17 16 20 20 C 1.38492 * 120.11370 * 359.97438 * 18 17 16 21 21 C 1.38314 * 120.28512 * 0.02562 * 20 18 17 22 22 C 1.50700 * 119.92125 * 180.02562 * 21 20 18 23 23 F 1.39905 * 109.46521 * 269.99475 * 22 21 20 24 24 F 1.39895 * 109.47044 * 29.99503 * 22 21 20 25 25 F 1.39893 * 109.46934 * 149.99769 * 22 21 20 26 26 C 1.37988 * 120.15670 * 359.97438 * 21 20 18 27 27 H 1.09002 * 109.46888 * 300.00386 * 1 2 3 28 28 H 1.08999 * 109.46800 * 60.00168 * 1 2 3 29 29 H 1.08992 * 109.46773 * 180.02562 * 1 2 3 30 30 H 0.97007 * 119.99581 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.47612 * 274.39867 * 13 12 2 32 32 H 1.09003 * 109.47344 * 34.40085 * 13 12 2 33 33 H 1.09006 * 109.47189 * 154.39300 * 13 12 2 34 34 H 1.07999 * 120.07727 * 359.95792 * 17 16 14 35 35 H 1.08010 * 119.85547 * 180.02562 * 20 18 17 36 36 H 1.08001 * 120.06008 * 180.28199 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6033 8 14 2.3214 -1.1205 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8269 -0.4201 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.0224 1.1486 1.9322 16 6 3.3645 -0.7574 3.2404 17 6 2.6675 -1.8204 3.8169 18 6 3.2070 -2.4904 4.8967 19 17 2.3421 -3.8126 5.6162 20 6 4.4369 -2.1097 5.4069 21 6 5.1318 -1.0570 4.8394 22 6 6.4698 -0.6499 5.4008 23 9 6.2835 0.3153 6.3963 24 9 7.1053 -1.7690 5.9493 25 9 7.2623 -0.1181 4.3781 26 6 4.6034 -0.3793 3.7598 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 0.7095 1.1617 -3.4844 31 1 0.6987 -2.1458 1.9308 32 1 1.6060 -2.6158 0.4733 33 1 2.4252 -2.5615 2.0526 34 1 1.7084 -2.1179 3.4193 35 1 4.8552 -2.6371 6.2516 36 1 5.1494 0.4395 3.3151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126364708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:42 Heat of formation + Delta-G solvation = -163.174499 kcal Electronic energy + Delta-G solvation = -26591.823583 eV Core-core repulsion = 22073.187556 eV Total energy + Delta-G solvation = -4518.636027 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.064 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.27326 -48.78297 -48.72694 -41.70856 -39.79933 -37.66301 -37.28381 -35.13341 -33.51698 -32.34237 -31.03963 -28.20959 -27.31740 -27.08555 -25.49884 -23.42424 -22.81318 -20.88752 -19.59812 -19.53693 -19.32287 -18.52457 -17.99668 -17.48647 -17.23187 -16.80088 -16.37352 -16.08228 -15.73724 -15.62096 -15.41756 -15.15988 -14.95572 -14.87869 -14.84182 -14.71827 -14.37929 -14.25184 -13.89604 -13.57821 -13.31514 -13.02523 -12.96512 -12.85344 -12.73217 -12.65784 -12.38439 -12.19072 -12.16699 -12.08864 -11.23830 -10.95317 -10.54335 -10.42991 -10.12367 -9.44794 -8.15494 -6.32115 -0.59847 -0.39443 0.80163 1.41538 1.44313 1.45613 1.52400 1.55784 2.04361 2.32490 2.43322 2.53464 2.89618 3.13337 3.27569 3.31610 3.63604 3.65987 3.76825 4.03132 4.12743 4.29414 4.59442 4.64256 4.69495 4.74862 4.83822 4.89537 4.96737 5.03838 5.11682 5.45840 5.51889 5.64181 5.99668 6.13332 6.64724 6.74090 7.15727 7.40290 8.88881 Molecular weight = 335.06amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.003468 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.603239 B = 8072.381888 C = 9067.817848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.013 0.987 4 C -0.541 4.541 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.261 1.261 10 H -0.285 1.285 11 H -0.278 1.278 12 N -0.585 5.585 13 C 0.058 3.942 14 C 0.538 3.462 15 O -0.591 6.591 16 C -0.120 4.120 17 C -0.053 4.053 18 C -0.042 4.042 19 Cl -0.031 7.031 20 C -0.031 4.031 21 C -0.179 4.179 22 C 0.520 3.480 23 F -0.174 7.174 24 F -0.167 7.167 25 F -0.179 7.179 26 C -0.022 4.022 27 H 0.022 0.978 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.265 0.735 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.542 -11.450 18.562 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.031 0.969 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.789 3.211 9 H -0.186 1.186 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.314 5.314 13 C -0.084 4.084 14 C 0.327 3.673 15 O -0.473 6.473 16 C -0.123 4.123 17 C -0.072 4.072 18 C -0.069 4.069 19 Cl -0.001 7.001 20 C -0.050 4.050 21 C -0.181 4.181 22 C 0.466 3.534 23 F -0.156 7.156 24 F -0.149 7.149 25 F -0.160 7.160 26 C -0.041 4.041 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.195 0.805 35 H 0.195 0.805 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.490 -10.857 18.384 22.045 hybrid contribution 0.395 0.227 -1.079 1.172 sum 5.885 -10.630 17.304 21.144 Atomic orbital electron populations 1.21878 0.96674 1.00418 1.00162 1.18641 0.91984 0.92305 0.81078 0.96941 1.21515 1.32200 1.13280 0.90942 0.91854 1.25696 0.94978 0.95579 1.01927 1.70016 1.37099 1.23736 1.24564 0.85527 0.78356 0.79067 0.78186 1.18577 1.21037 1.20389 1.48152 1.47837 1.13329 1.22060 1.22564 1.01212 0.80779 1.03809 1.18625 0.79220 0.86466 0.82987 1.90737 1.62452 1.17245 1.76914 1.19678 0.96524 0.98387 0.97718 1.22208 1.01414 0.91173 0.92377 1.20589 0.94687 0.94822 0.96760 1.98415 1.75490 1.44189 1.82054 1.21207 0.91858 0.93205 0.98683 1.19719 0.95966 1.01798 1.00614 1.17940 0.84773 0.74993 0.75702 1.93247 1.95313 1.64502 1.62510 1.93212 1.83703 1.51820 1.86136 1.93220 1.76357 1.86824 1.59620 1.21026 0.93608 0.96940 0.92530 0.95935 0.91274 0.93084 0.92582 0.90044 0.90581 0.88594 0.80539 0.80476 0.84382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.16 8.97 71.99 0.65 -5.51 16 2 C 0.26 13.18 2.63 44.25 0.12 13.30 16 3 H 0.01 0.76 6.91 -2.39 -0.02 0.75 16 4 C -0.54 -28.43 8.03 25.60 0.21 -28.23 16 5 H 0.06 3.21 7.26 -2.91 -0.02 3.19 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.92 -51.62 11.32 21.45 0.24 -51.38 16 8 Si 0.96 41.96 29.54 68.60 2.03 43.98 16 9 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.59 -23.72 2.75 -830.19 -2.29 -26.01 16 13 C 0.06 1.67 7.83 127.77 1.00 2.67 16 14 C 0.54 21.91 7.44 86.79 0.65 22.55 16 15 O -0.59 -29.64 16.09 -3.88 -0.06 -29.71 16 16 C -0.12 -3.52 5.47 -20.09 -0.11 -3.63 16 17 C -0.05 -1.15 7.22 22.55 0.16 -0.99 16 18 C -0.04 -0.73 6.31 22.29 0.14 -0.59 16 19 Cl -0.03 -0.45 28.95 -2.72 -0.08 -0.52 16 20 C -0.03 -0.51 9.18 22.35 0.21 -0.31 16 21 C -0.18 -3.78 5.45 -19.91 -0.11 -3.88 16 22 C 0.52 10.59 3.36 71.24 0.24 10.83 16 23 F -0.17 -3.69 17.30 44.97 0.78 -2.91 16 24 F -0.17 -3.01 16.45 44.97 0.74 -2.27 16 25 F -0.18 -4.18 16.45 44.97 0.74 -3.45 16 26 C -0.02 -0.59 8.95 22.53 0.20 -0.39 16 27 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 29 H 0.05 2.11 7.67 -2.39 -0.02 2.09 16 30 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 31 H 0.08 1.90 7.43 -2.39 -0.02 1.88 16 32 H 0.08 2.37 6.97 -2.39 -0.02 2.35 16 33 H 0.10 2.21 4.72 -2.38 -0.01 2.20 16 34 H 0.18 3.37 4.79 -2.91 -0.01 3.36 16 35 H 0.18 1.95 7.59 -2.91 -0.02 1.93 16 36 H 0.14 4.09 7.49 -2.91 -0.02 4.07 16 Total: -1.00 -65.27 329.68 7.05 -58.22 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.16 Total: 6.81 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 3.79 Total: 7.23 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -2.04 Total: -77.38 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.06 Total: -29.71 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 2.26 Total: -8.63 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.52 kcal Total: -65.27 7.05 -58.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126364708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.955 kcal (2) G-P(sol) polarization free energy of solvation -65.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds