Wall clock time and date at job start Tue Mar 31 2020 05:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 119.99729 * 2 1 4 4 H 1.48504 * 109.46848 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47396 * 300.00163 * 3 2 1 6 6 H 1.48506 * 109.46976 * 60.00613 * 3 2 1 7 7 C 1.38948 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00558 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99941 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99953 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00101 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00187 * 179.97438 * 10 9 7 13 13 S 1.80998 * 109.47566 * 180.02562 * 12 10 9 14 14 C 1.76194 * 99.99969 * 180.02562 * 13 12 10 15 15 N 1.32623 * 120.64503 * 0.02562 * 14 13 12 16 16 C 1.32059 * 121.12414 * 179.97438 * 15 14 13 17 17 N 1.31301 * 122.29145 * 0.02562 * 16 15 14 18 18 C 1.34117 * 120.89652 * 0.02562 * 17 16 15 19 19 S 1.75392 * 131.29928 * 179.97438 * 18 17 16 20 20 C 1.76326 * 92.45283 * 179.97438 * 19 18 17 21 21 C 1.32548 * 111.35089 * 0.02562 * 20 19 18 22 22 C 1.39061 * 119.09642 * 359.70911 * 18 17 16 23 23 C 1.52876 * 110.19425 * 179.97438 * 21 20 19 24 24 C 1.54123 * 104.90468 * 17.56500 * 23 21 20 25 25 C 1.52605 * 138.13017 * 180.02562 * 20 19 18 26 26 H 0.96997 * 120.00545 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99725 * 0.02562 * 9 7 2 28 28 H 1.09001 * 109.46788 * 59.99868 * 12 10 9 29 29 H 1.09002 * 109.47264 * 300.00920 * 12 10 9 30 30 H 1.07999 * 118.85197 * 180.02562 * 16 15 14 31 31 H 1.08997 * 110.35040 * 136.42305 * 23 21 20 32 32 H 1.08997 * 110.35086 * 258.60089 * 23 21 20 33 33 H 1.09001 * 111.01184 * 91.48711 * 24 23 21 34 34 H 1.08994 * 111.01400 * 215.31716 * 24 23 21 35 35 H 1.09007 * 110.36503 * 43.61466 * 25 20 19 36 36 H 1.09005 * 110.45893 * 281.34800 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8893 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2103 -3.5578 -0.0022 12 6 1.2439 -4.8630 -0.0032 13 16 2.4201 -6.2387 -0.0038 14 6 1.3001 -7.5988 -0.0052 15 7 -0.0105 -7.3953 -0.0060 16 6 -0.8585 -8.4077 -0.0076 17 7 -0.4580 -9.6581 -0.0079 18 6 0.8481 -9.9630 -0.0061 19 16 1.6758 -11.5093 -0.0054 20 6 3.2645 -10.7444 -0.0037 21 6 3.1639 -9.4228 -0.0032 22 6 1.7828 -8.9334 -0.0101 23 6 4.5544 -8.7876 -0.0010 24 6 5.5055 -9.9142 -0.4499 25 6 4.7303 -11.1692 -0.0027 26 1 -0.4851 0.8400 -0.0004 27 1 0.3534 -2.3907 -0.0024 28 1 0.6169 -4.9201 -0.8930 29 1 0.6175 -4.9213 0.8869 30 1 -1.9183 -8.1998 -0.0086 31 1 4.5925 -7.9563 -0.7050 32 1 4.8140 -8.4469 1.0013 33 1 5.6410 -9.9036 -1.5314 34 1 6.4649 -9.8431 0.0626 35 1 4.8893 -11.9851 -0.7079 36 1 5.0395 -11.4688 0.9987 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169982273.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:35 Heat of formation + Delta-G solvation = 13.045715 kcal Electronic energy + Delta-G solvation = -22602.147536 eV Core-core repulsion = 19110.099059 eV Total energy + Delta-G solvation = -3492.048476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 335.050 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.06055 -40.17608 -39.62783 -36.11513 -35.04458 -34.35490 -33.44385 -31.01857 -29.97921 -28.90480 -26.74855 -26.25169 -25.11815 -22.17142 -21.45871 -20.60197 -20.21988 -19.77928 -18.74794 -17.88321 -17.69342 -17.05276 -16.82186 -16.50007 -16.35603 -15.96685 -15.88806 -15.72763 -14.65476 -14.36981 -14.01529 -13.95434 -13.87532 -13.64838 -13.49176 -13.43192 -12.95321 -12.85223 -12.50096 -12.47016 -12.36018 -12.11970 -12.08456 -12.03548 -11.67002 -11.60255 -11.57046 -10.65920 -10.42921 -10.16425 -10.11499 -9.35083 -8.74248 -8.53501 -6.03759 -0.77414 -0.45177 -0.13105 0.11278 0.74808 0.91688 0.98081 1.33423 1.42231 1.56601 1.85909 2.26690 2.41356 2.98459 3.06657 3.12693 3.13328 3.16587 3.48467 3.64555 3.96195 4.08138 4.10544 4.15110 4.18660 4.38058 4.55700 4.74482 4.81668 4.92468 4.94775 4.99615 5.17111 5.27747 5.34394 5.36369 5.52256 5.87451 6.44051 6.75597 7.00661 7.38841 7.90839 8.63708 Molecular weight = 335.05amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.002712 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.326560 B =10321.315660 C =11614.107680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.555 5.555 10 C 0.449 3.551 11 O -0.617 6.617 12 C -0.123 4.123 13 S 0.062 5.938 14 C 0.181 3.819 15 N -0.546 5.546 16 C 0.319 3.681 17 N -0.512 5.512 18 C 0.072 3.928 19 S 0.222 5.778 20 C -0.189 4.189 21 C -0.111 4.111 22 C -0.163 4.163 23 C -0.070 4.070 24 C -0.109 4.109 25 C -0.038 4.038 26 H 0.280 0.720 27 H 0.399 0.601 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.238 0.762 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 -23.668 -0.087 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.191 5.191 10 C 0.235 3.765 11 O -0.505 6.505 12 C -0.275 4.275 13 S 0.302 5.698 14 C -0.084 4.084 15 N -0.266 5.266 16 C 0.024 3.976 17 N -0.231 5.231 18 C -0.179 4.179 19 S 0.484 5.516 20 C -0.306 4.306 21 C -0.123 4.123 22 C -0.183 4.183 23 C -0.109 4.109 24 C -0.147 4.147 25 C -0.078 4.078 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.254 0.746 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.624 -24.746 -0.084 25.175 hybrid contribution -1.103 2.445 0.021 2.683 sum 3.522 -22.301 -0.063 22.577 Atomic orbital electron populations 1.69678 1.06993 1.29640 1.49226 1.26126 0.96549 1.02630 0.95675 0.84818 0.78160 0.76658 0.78400 1.19436 1.19508 1.19519 1.19786 0.92957 0.83437 1.50420 0.89635 1.41807 1.09548 1.04367 1.63375 1.19695 0.87723 0.85053 0.84013 1.90530 1.14940 1.87381 1.57699 1.23512 1.01474 0.93526 1.08978 1.86436 1.04961 0.91070 1.87308 1.24319 0.95281 0.96549 0.92222 1.68820 1.01377 1.37149 1.19301 1.25603 1.01558 0.81803 0.88596 1.68279 1.13705 1.23269 1.17802 1.24023 0.93389 0.99898 1.00636 1.83774 0.92528 0.98727 1.76592 1.26144 1.01026 0.96968 1.06441 1.21248 0.92737 0.95000 1.03281 1.20014 0.95013 0.93408 1.09902 1.21300 0.87433 0.99117 1.03060 1.22353 0.98294 0.91473 1.02618 1.21154 0.82948 0.99356 1.04325 0.91001 0.76651 0.85963 0.85959 0.74580 0.91132 0.89375 0.89876 0.87281 0.88073 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.59 13.05 21.66 0.28 -48.31 16 2 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 3 Si 1.00 41.87 29.55 68.60 2.03 43.90 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.34 -18.74 9.68 84.04 0.81 -17.93 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 9 N -0.56 -28.32 5.29 -306.98 -1.62 -29.94 16 10 C 0.45 21.40 7.80 87.66 0.68 22.09 16 11 O -0.62 -33.43 15.44 -3.08 -0.05 -33.48 16 12 C -0.12 -4.55 5.36 71.24 0.38 -4.17 16 13 S 0.06 2.13 19.79 -56.49 -1.12 1.02 16 14 C 0.18 5.73 7.08 85.49 0.60 6.34 16 15 N -0.55 -16.48 9.29 -194.79 -1.81 -18.29 16 16 C 0.32 8.21 12.26 180.95 2.22 10.43 16 17 N -0.51 -14.14 10.49 -196.74 -2.06 -16.20 16 18 C 0.07 1.97 7.67 84.54 0.65 2.62 16 19 S 0.22 4.42 23.23 -56.49 -1.31 3.11 16 20 C -0.19 -3.57 7.24 25.15 0.18 -3.39 16 21 C -0.11 -2.66 6.43 -18.15 -0.12 -2.78 16 22 C -0.16 -4.76 6.04 -20.01 -0.12 -4.88 16 23 C -0.07 -1.39 6.11 30.93 0.19 -1.20 16 24 C -0.11 -1.29 7.13 31.36 0.22 -1.07 16 25 C -0.04 -0.42 6.82 30.85 0.21 -0.21 16 26 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 27 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 28 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 29 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 30 H 0.24 4.05 8.06 -2.91 -0.02 4.03 16 31 H 0.07 1.62 7.63 -2.39 -0.02 1.60 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -68.83 338.60 1.14 -67.68 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.42 Total: 24.67 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.38 Total: 5.84 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -5.21 Total: -112.74 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -0.05 Total: -33.48 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 6.56 SS G_CDS: -2.43 Total: 4.13 kcal Total: -68.83 1.14 -67.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169982273.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.730 kcal (2) G-P(sol) polarization free energy of solvation -68.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds