Wall clock time and date at job start Tue Mar 31 2020 05:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86797 * 119.99844 * 2 1 4 4 H 1.48500 * 109.47637 * 269.99970 * 3 2 1 5 5 H 1.48509 * 109.47202 * 30.00265 * 3 2 1 6 6 H 1.48505 * 109.47187 * 149.99900 * 3 2 1 7 7 C 1.39885 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00098 * 196.89577 * 7 2 1 9 9 C 1.41139 * 119.99712 * 16.89865 * 7 2 1 10 10 C 1.40883 * 120.15529 * 205.28215 * 9 7 2 11 11 C 1.36356 * 119.82843 * 180.02562 * 10 9 7 12 12 C 1.39513 * 120.16608 * 0.02562 * 11 10 9 13 13 N 1.39145 * 119.83796 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00442 * 139.27391 * 13 12 11 15 15 S 1.71203 * 119.99771 * 354.27829 * 14 13 12 16 16 N 1.34773 * 120.00237 * 174.55485 * 14 13 12 17 17 C 1.46498 * 120.00151 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47340 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46848 * 179.97438 * 18 17 16 20 20 N 1.46900 * 109.46641 * 179.97438 * 19 18 17 21 21 C 1.48542 * 111.00034 * 52.60610 * 20 19 18 22 22 C 1.54940 * 103.22758 * 159.71855 * 21 20 19 23 23 C 1.54599 * 102.91848 * 322.58619 * 22 21 20 24 24 C 1.47906 * 111.00028 * 169.99985 * 20 19 18 25 25 C 1.39507 * 120.33026 * 0.22981 * 12 11 10 26 26 C 1.36362 * 120.16335 * 359.48813 * 25 12 11 27 27 H 0.96997 * 120.00343 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.08675 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.92124 * 179.97438 * 11 10 9 30 30 H 0.97000 * 119.99764 * 319.28019 * 13 12 11 31 31 H 0.97000 * 120.00026 * 0.02562 * 16 14 13 32 32 H 1.09007 * 109.46901 * 300.00379 * 17 16 14 33 33 H 1.08999 * 109.47116 * 59.99706 * 17 16 14 34 34 H 1.08998 * 109.47024 * 300.00351 * 18 17 16 35 35 H 1.09000 * 109.46583 * 60.00549 * 18 17 16 36 36 H 1.08998 * 109.46922 * 299.99860 * 19 18 17 37 37 H 1.08992 * 109.46968 * 60.00579 * 19 18 17 38 38 H 1.08997 * 110.66463 * 278.15232 * 21 20 19 39 39 H 1.08994 * 110.66453 * 41.28281 * 21 20 19 40 40 H 1.08992 * 110.72479 * 204.22778 * 22 21 20 41 41 H 1.08997 * 110.72033 * 80.94286 * 22 21 20 42 42 H 1.09002 * 110.30896 * 263.03694 * 23 22 21 43 43 H 1.09007 * 110.30842 * 140.87198 * 23 22 21 44 44 H 1.09003 * 109.91428 * 333.50991 * 24 20 19 45 45 H 1.08998 * 109.91628 * 94.60508 * 24 20 19 46 46 H 1.07997 * 119.92055 * 179.72253 * 25 12 11 47 47 H 1.08003 * 120.08469 * 180.25145 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0465 -1.4000 5 1 1.4402 2.6527 0.7001 6 1 3.5404 1.4402 0.7001 7 6 2.0083 -1.2114 0.0005 8 1 3.0534 -1.2315 0.2724 9 6 1.3483 -2.4075 -0.3542 10 6 1.8197 -3.6452 0.1260 11 6 1.1773 -4.7967 -0.2213 12 6 0.0562 -4.7512 -1.0505 13 7 -0.5938 -5.9305 -1.4011 14 6 -1.9404 -5.9725 -1.4380 15 16 -2.8536 -4.6227 -0.9133 16 7 -2.5683 -7.0791 -1.8825 17 6 -4.0320 -7.1250 -1.9220 18 6 -4.4853 -8.4823 -2.4634 19 6 -6.0141 -8.5303 -2.5040 20 7 -6.4493 -9.8333 -3.0243 21 6 -5.8173 -10.9458 -2.2699 22 6 -6.7474 -12.1489 -2.5668 23 6 -8.1528 -11.5048 -2.5779 24 6 -7.9082 -10.0103 -2.8571 25 6 -0.4132 -3.5298 -1.5343 26 6 0.2155 -2.3695 -1.1908 27 1 -0.4850 0.8400 -0.0004 28 1 2.6881 -3.6820 0.7669 29 1 1.5376 -5.7463 0.1456 30 1 -0.0778 -6.7224 -1.6190 31 1 -2.0509 -7.8455 -2.1757 32 1 -4.4272 -6.9842 -0.9159 33 1 -4.4029 -6.3326 -2.5722 34 1 -4.0901 -8.6225 -3.4695 35 1 -4.1145 -9.2748 -1.8135 36 1 -6.4088 -8.3902 -1.4977 37 1 -6.3853 -7.7377 -3.1536 38 1 -4.8100 -11.1378 -2.6396 39 1 -5.8011 -10.7263 -1.2024 40 1 -6.6726 -12.8980 -1.7787 41 1 -6.5153 -12.5851 -3.5384 42 1 -8.6360 -11.6347 -1.6095 43 1 -8.7632 -11.9423 -3.3679 44 1 -8.2607 -9.4130 -2.0162 45 1 -8.4255 -9.7102 -3.7683 46 1 -1.2790 -3.5027 -2.1793 47 1 -0.1515 -1.4243 -1.5627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225433126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:21 Heat of formation + Delta-G solvation = 41.353234 kcal Electronic energy + Delta-G solvation = -24760.963289 eV Core-core repulsion = 21262.200210 eV Total energy + Delta-G solvation = -3498.763079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.52381 -39.05051 -37.43877 -35.54036 -33.85138 -32.92805 -30.44588 -29.51998 -29.29488 -28.78412 -25.78079 -24.50579 -23.41393 -22.66770 -21.24749 -21.13112 -20.89838 -20.33671 -17.92984 -17.33899 -17.31726 -16.50924 -16.26505 -15.82414 -15.33257 -15.04533 -14.67227 -14.55248 -14.26615 -13.92861 -13.58049 -13.41077 -12.96302 -12.73776 -12.60983 -12.16894 -12.08033 -11.84044 -11.78027 -11.73903 -11.63548 -11.48631 -11.31752 -11.13358 -11.04516 -10.96536 -10.80334 -10.55627 -10.44528 -9.85798 -9.63272 -9.32955 -8.85190 -8.81915 -7.67035 -7.36679 -7.00174 -6.77654 -6.23989 -4.31850 1.75151 2.46809 2.83372 3.04956 3.08993 3.11985 3.16225 3.27645 3.59774 3.92971 3.99444 4.21814 4.27343 4.52114 4.63600 4.64167 4.77261 4.79301 4.86941 5.07307 5.19945 5.27019 5.31409 5.39377 5.42127 5.51774 5.56389 5.64314 5.70677 5.76440 5.84365 5.86303 6.09701 6.30531 6.38808 6.46421 6.59121 6.63234 7.00352 7.05226 7.13584 7.23891 7.32139 7.62125 7.68846 7.95643 8.07157 8.21657 8.29055 8.65382 8.87786 8.98409 10.17677 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.034501 B = 0.001820 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.374515 B =15377.651533 C =15995.856491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.453 4.453 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.226 4.226 11 C -0.081 4.081 12 C -0.038 4.038 13 N -0.592 5.592 14 C 0.541 3.459 15 S -0.636 6.636 16 N -0.700 5.700 17 C 0.133 3.867 18 C -0.132 4.132 19 C 0.051 3.949 20 N -0.518 5.518 21 C 0.031 3.969 22 C -0.125 4.125 23 C -0.132 4.132 24 C 0.034 3.966 25 C -0.038 4.038 26 C -0.164 4.164 27 H 0.283 0.717 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.389 0.611 31 H 0.390 0.610 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.661 -20.698 -6.294 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.482 4.482 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.246 4.246 11 C -0.102 4.102 12 C -0.131 4.131 13 N -0.211 5.211 14 C 0.182 3.818 15 S -0.508 6.508 16 N -0.332 5.332 17 C 0.008 3.992 18 C -0.171 4.171 19 C -0.077 4.077 20 N -0.242 5.242 21 C -0.097 4.097 22 C -0.163 4.163 23 C -0.170 4.170 24 C -0.094 4.094 25 C -0.060 4.060 26 C -0.185 4.185 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.225 0.775 31 H 0.225 0.775 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.129 0.871 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.455 -19.556 -6.452 23.564 hybrid contribution 0.982 -0.653 0.576 1.312 sum -10.473 -20.208 -5.877 23.507 Atomic orbital electron populations 1.69888 1.07502 1.29523 1.32900 1.25987 0.94771 1.01452 0.92475 0.86294 0.80429 0.80550 0.79359 1.19200 1.20227 1.18600 1.19625 0.97823 0.91235 1.39481 0.90251 1.17723 0.90874 0.91955 0.87847 1.20465 1.04284 0.92410 1.07487 1.19983 0.96130 0.97105 0.96991 1.16903 1.00404 0.83719 1.12080 1.41981 1.02356 1.13929 1.62804 1.22405 0.86022 0.90221 0.83115 1.93410 1.62914 1.28109 1.66404 1.44777 1.08291 1.14623 1.65550 1.21481 0.77211 0.97199 1.03329 1.21866 0.95925 0.96863 1.02396 1.22170 0.94576 0.92005 0.98998 1.64824 1.05120 1.02076 1.52227 1.23275 0.98983 0.90986 0.96437 1.22489 0.94407 0.97164 1.02257 1.22403 0.97639 0.95007 1.01959 1.22886 0.89080 0.96274 1.01166 1.20518 0.96537 0.91108 0.97809 1.20876 0.99213 0.96657 1.01761 0.90558 0.88639 0.89564 0.77547 0.77483 0.90049 0.89758 0.90428 0.91388 0.93955 0.89807 0.89959 0.93570 0.91082 0.90719 0.91504 0.90962 0.93521 0.90194 0.87128 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.52 10.95 55.54 0.61 -19.91 16 2 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 3 Si 0.91 18.62 29.59 -169.99 -5.03 13.59 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.45 -11.91 9.04 -37.87 -0.34 -12.25 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 9 C 0.12 3.17 5.57 -106.80 -0.59 2.58 16 10 C -0.23 -5.45 9.74 -39.26 -0.38 -5.83 16 11 C -0.08 -1.78 9.90 -39.78 -0.39 -2.17 16 12 C -0.04 -0.84 5.94 -83.59 -0.50 -1.33 16 13 N -0.59 -10.11 5.29 -11.28 -0.06 -10.17 16 14 C 0.54 9.36 7.73 -86.92 -0.67 8.69 16 15 S -0.64 -14.50 24.96 -107.50 -2.68 -17.19 16 16 N -0.70 -8.39 5.56 -62.03 -0.34 -8.73 16 17 C 0.13 1.45 5.13 -4.04 -0.02 1.43 16 18 C -0.13 -1.02 4.99 -26.73 -0.13 -1.15 16 19 C 0.05 0.41 5.03 -3.82 -0.02 0.39 16 20 N -0.52 -4.10 5.40 -230.45 -1.24 -5.34 16 21 C 0.03 0.21 5.10 -1.89 -0.01 0.20 16 22 C -0.13 -0.72 7.06 -24.87 -0.18 -0.90 16 23 C -0.13 -0.75 6.93 -25.38 -0.18 -0.93 16 24 C 0.03 0.23 6.70 -2.75 -0.02 0.22 16 25 C -0.04 -0.94 7.76 -39.78 -0.31 -1.25 16 26 C -0.16 -4.39 8.63 -39.26 -0.34 -4.73 16 27 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 28 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 29 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.39 5.01 8.84 -40.82 -0.36 4.65 16 31 H 0.39 3.35 8.49 -40.82 -0.35 3.00 16 32 H 0.08 1.02 7.99 -51.92 -0.41 0.60 16 33 H 0.08 1.05 8.00 -51.93 -0.42 0.63 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.48 6.80 -51.93 -0.35 0.13 16 36 H 0.04 0.34 7.81 -51.93 -0.41 -0.06 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.53 7.67 -51.93 -0.40 0.13 16 39 H 0.05 0.32 8.00 -51.93 -0.42 -0.09 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 44 H 0.05 0.32 7.57 -51.93 -0.39 -0.07 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.11 2.76 6.16 -47.12 -0.29 2.47 16 47 H 0.12 3.35 6.17 -52.48 -0.32 3.02 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -31.97 386.26 -14.58 -46.54 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -7.47 Total: 10.70 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -4.17 Total: -15.30 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -1.04 Total: -44.16 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Atomic # 16 Polarization: -14.50 SS G_CDS: -2.68 Total: -17.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.97 -14.58 -46.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225433126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.894 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds