Wall clock time and date at job start Tue Mar 31 2020 05:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86797 * 119.99844 * 2 1 4 4 H 1.48500 * 109.47637 * 269.99970 * 3 2 1 5 5 H 1.48509 * 109.47202 * 30.00265 * 3 2 1 6 6 H 1.48505 * 109.47187 * 149.99900 * 3 2 1 7 7 C 1.39885 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00098 * 196.89577 * 7 2 1 9 9 C 1.41139 * 119.99712 * 16.89865 * 7 2 1 10 10 C 1.40883 * 120.15529 * 205.28215 * 9 7 2 11 11 C 1.36356 * 119.82843 * 180.02562 * 10 9 7 12 12 C 1.39513 * 120.16608 * 0.02562 * 11 10 9 13 13 N 1.39145 * 119.83796 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00442 * 139.27391 * 13 12 11 15 15 S 1.71203 * 119.99771 * 354.27829 * 14 13 12 16 16 N 1.34773 * 120.00237 * 174.55485 * 14 13 12 17 17 C 1.46498 * 120.00151 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47340 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46848 * 179.97438 * 18 17 16 20 20 N 1.46900 * 109.46641 * 179.97438 * 19 18 17 21 21 C 1.48542 * 111.00034 * 52.60610 * 20 19 18 22 22 C 1.54940 * 103.22758 * 159.71855 * 21 20 19 23 23 C 1.54599 * 102.91848 * 322.58619 * 22 21 20 24 24 C 1.47906 * 111.00028 * 169.99985 * 20 19 18 25 25 C 1.39507 * 120.33026 * 0.22981 * 12 11 10 26 26 C 1.36362 * 120.16335 * 359.48813 * 25 12 11 27 27 H 0.96997 * 120.00343 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.08675 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.92124 * 179.97438 * 11 10 9 30 30 H 0.97000 * 119.99764 * 319.28019 * 13 12 11 31 31 H 0.97000 * 120.00026 * 0.02562 * 16 14 13 32 32 H 1.09007 * 109.46901 * 300.00379 * 17 16 14 33 33 H 1.08999 * 109.47116 * 59.99706 * 17 16 14 34 34 H 1.08998 * 109.47024 * 300.00351 * 18 17 16 35 35 H 1.09000 * 109.46583 * 60.00549 * 18 17 16 36 36 H 1.08998 * 109.46922 * 299.99860 * 19 18 17 37 37 H 1.08992 * 109.46968 * 60.00579 * 19 18 17 38 38 H 1.08997 * 110.66463 * 278.15232 * 21 20 19 39 39 H 1.08994 * 110.66453 * 41.28281 * 21 20 19 40 40 H 1.08992 * 110.72479 * 204.22778 * 22 21 20 41 41 H 1.08997 * 110.72033 * 80.94286 * 22 21 20 42 42 H 1.09002 * 110.30896 * 263.03694 * 23 22 21 43 43 H 1.09007 * 110.30842 * 140.87198 * 23 22 21 44 44 H 1.09003 * 109.91428 * 333.50991 * 24 20 19 45 45 H 1.08998 * 109.91628 * 94.60508 * 24 20 19 46 46 H 1.07997 * 119.92055 * 179.72253 * 25 12 11 47 47 H 1.08003 * 120.08469 * 180.25145 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0465 -1.4000 5 1 1.4402 2.6527 0.7001 6 1 3.5404 1.4402 0.7001 7 6 2.0083 -1.2114 0.0005 8 1 3.0534 -1.2315 0.2724 9 6 1.3483 -2.4075 -0.3542 10 6 1.8197 -3.6452 0.1260 11 6 1.1773 -4.7967 -0.2213 12 6 0.0562 -4.7512 -1.0505 13 7 -0.5938 -5.9305 -1.4011 14 6 -1.9404 -5.9725 -1.4380 15 16 -2.8536 -4.6227 -0.9133 16 7 -2.5683 -7.0791 -1.8825 17 6 -4.0320 -7.1250 -1.9220 18 6 -4.4853 -8.4823 -2.4634 19 6 -6.0141 -8.5303 -2.5040 20 7 -6.4493 -9.8333 -3.0243 21 6 -5.8173 -10.9458 -2.2699 22 6 -6.7474 -12.1489 -2.5668 23 6 -8.1528 -11.5048 -2.5779 24 6 -7.9082 -10.0103 -2.8571 25 6 -0.4132 -3.5298 -1.5343 26 6 0.2155 -2.3695 -1.1908 27 1 -0.4850 0.8400 -0.0004 28 1 2.6881 -3.6820 0.7669 29 1 1.5376 -5.7463 0.1456 30 1 -0.0778 -6.7224 -1.6190 31 1 -2.0509 -7.8455 -2.1757 32 1 -4.4272 -6.9842 -0.9159 33 1 -4.4029 -6.3326 -2.5722 34 1 -4.0901 -8.6225 -3.4695 35 1 -4.1145 -9.2748 -1.8135 36 1 -6.4088 -8.3902 -1.4977 37 1 -6.3853 -7.7377 -3.1536 38 1 -4.8100 -11.1378 -2.6396 39 1 -5.8011 -10.7263 -1.2024 40 1 -6.6726 -12.8980 -1.7787 41 1 -6.5153 -12.5851 -3.5384 42 1 -8.6360 -11.6347 -1.6095 43 1 -8.7632 -11.9423 -3.3679 44 1 -8.2607 -9.4130 -2.0162 45 1 -8.4255 -9.7102 -3.7683 46 1 -1.2790 -3.5027 -2.1793 47 1 -0.1515 -1.4243 -1.5627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225433126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:20 Heat of formation + Delta-G solvation = 21.731491 kcal Electronic energy + Delta-G solvation = -24761.814152 eV Core-core repulsion = 21262.200210 eV Total energy + Delta-G solvation = -3499.613942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74863 -39.98916 -38.96160 -36.93681 -35.25141 -34.18023 -31.49001 -31.39238 -30.44635 -29.72738 -27.17566 -25.84772 -24.85556 -23.45190 -22.98105 -22.32533 -21.71446 -21.29798 -19.39311 -19.18788 -18.79164 -17.26396 -17.08662 -16.96828 -16.66290 -16.58061 -15.85090 -15.72030 -15.56367 -15.09342 -14.79830 -14.51934 -14.05042 -13.94876 -13.91025 -13.64152 -13.43807 -13.20946 -12.93007 -12.78212 -12.54335 -12.44659 -12.31914 -12.29186 -12.21990 -12.11280 -12.00024 -11.77474 -11.63107 -11.44028 -11.40193 -11.11068 -10.39720 -9.55056 -9.41491 -9.13676 -8.82091 -8.64227 -8.07534 -6.28211 0.20628 0.93848 1.11998 1.26223 1.39899 1.53928 1.54485 1.67023 2.21865 2.67793 2.77295 3.01560 3.69318 3.77533 3.78168 3.93160 3.94350 4.09244 4.18445 4.35999 4.41899 4.46008 4.54593 4.57758 4.65795 4.71632 4.72988 4.83593 4.91526 4.96771 4.98229 5.05771 5.08831 5.13617 5.14262 5.20976 5.23514 5.31317 5.36801 5.47173 5.73930 5.82418 5.91980 6.01792 6.03827 6.13813 6.23504 6.38090 6.60455 6.72564 6.94180 7.06328 8.33634 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.034501 B = 0.001820 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.374515 B =15377.651533 C =15995.856491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.030 3.970 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.488 4.488 8 H 0.084 0.916 9 C 0.088 3.912 10 C -0.237 4.237 11 C -0.076 4.076 12 C -0.022 4.022 13 N -0.580 5.580 14 C 0.572 3.428 15 S -0.744 6.744 16 N -0.662 5.662 17 C 0.133 3.867 18 C -0.114 4.114 19 C 0.052 3.948 20 N -0.528 5.528 21 C 0.027 3.973 22 C -0.124 4.124 23 C -0.131 4.131 24 C 0.029 3.971 25 C -0.044 4.044 26 C -0.190 4.190 27 H 0.287 0.713 28 H 0.109 0.891 29 H 0.131 0.869 30 H 0.419 0.581 31 H 0.417 0.583 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.749 -23.929 -6.658 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.517 4.517 8 H 0.102 0.898 9 C 0.085 3.915 10 C -0.257 4.257 11 C -0.096 4.096 12 C -0.116 4.116 13 N -0.202 5.202 14 C 0.208 3.792 15 S -0.617 6.617 16 N -0.293 5.293 17 C 0.009 3.991 18 C -0.152 4.152 19 C -0.077 4.077 20 N -0.252 5.252 21 C -0.100 4.100 22 C -0.162 4.162 23 C -0.169 4.169 24 C -0.099 4.099 25 C -0.066 4.066 26 C -0.211 4.211 27 H 0.098 0.902 28 H 0.127 0.873 29 H 0.149 0.851 30 H 0.259 0.741 31 H 0.257 0.743 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.119 0.881 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.538 -22.895 -6.848 26.118 hybrid contribution 0.564 0.045 0.608 0.831 sum -9.974 -22.851 -6.240 25.702 Atomic orbital electron populations 1.69983 1.09292 1.30602 1.34530 1.26903 0.95397 1.04981 0.91324 0.85153 0.79101 0.75606 0.79544 1.18633 1.19663 1.17569 1.19905 0.98251 0.92257 1.41296 0.89776 1.18061 0.91346 0.93522 0.88547 1.20720 1.04981 0.92368 1.07673 1.20328 0.95247 0.98266 0.95742 1.16841 1.00002 0.84277 1.10435 1.41576 1.02180 1.13669 1.62802 1.21701 0.85594 0.89795 0.82099 1.93762 1.64871 1.32348 1.70763 1.44695 1.09096 1.13491 1.62037 1.21564 0.75959 0.98970 1.02591 1.21715 0.95716 0.94806 1.02946 1.22118 0.94633 0.92271 0.98675 1.64833 1.05708 1.02130 1.52547 1.23350 0.99490 0.90929 0.96231 1.22502 0.93973 0.97018 1.02666 1.22413 0.97936 0.94040 1.02497 1.22944 0.88663 0.97244 1.01020 1.20528 0.96025 0.92020 0.98048 1.20758 1.00503 0.96476 1.03363 0.90230 0.87263 0.85091 0.74093 0.74305 0.91285 0.91160 0.89467 0.89789 0.94398 0.90433 0.89275 0.93721 0.89984 0.90719 0.91007 0.90315 0.93859 0.90322 0.88058 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.74 10.95 21.82 0.24 -45.50 16 2 C 0.03 1.54 5.15 85.23 0.44 1.98 16 3 Si 0.99 39.12 29.59 68.60 2.03 41.15 16 4 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 7 C -0.49 -26.55 9.04 23.38 0.21 -26.34 16 8 H 0.08 4.30 7.90 -2.91 -0.02 4.28 16 9 C 0.09 4.84 5.57 -21.27 -0.12 4.72 16 10 C -0.24 -11.32 9.74 22.48 0.22 -11.10 16 11 C -0.08 -3.11 9.90 22.14 0.22 -2.89 16 12 C -0.02 -0.92 5.94 38.59 0.23 -0.69 16 13 N -0.58 -18.00 5.29 -189.60 -1.00 -19.00 16 14 C 0.57 18.61 7.73 179.06 1.38 20.00 16 15 S -0.74 -34.61 24.96 -56.49 -1.41 -36.02 16 16 N -0.66 -13.69 5.56 -350.16 -1.95 -15.64 16 17 C 0.13 2.66 5.13 86.38 0.44 3.11 16 18 C -0.11 -1.42 4.99 30.60 0.15 -1.27 16 19 C 0.05 0.74 5.03 86.30 0.43 1.18 16 20 N -0.53 -7.36 5.40 -883.00 -4.77 -12.12 16 21 C 0.03 0.30 5.10 86.65 0.44 0.75 16 22 C -0.12 -1.14 7.06 31.80 0.22 -0.91 16 23 C -0.13 -1.26 6.93 31.47 0.22 -1.04 16 24 C 0.03 0.37 6.70 86.44 0.58 0.95 16 25 C -0.04 -2.25 7.76 22.14 0.17 -2.07 16 26 C -0.19 -10.66 8.63 22.48 0.19 -10.47 16 27 H 0.29 14.65 8.30 -92.71 -0.77 13.89 16 28 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 29 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.42 8.64 8.84 -92.71 -0.82 7.82 16 31 H 0.42 5.01 8.49 -92.71 -0.79 4.22 16 32 H 0.07 1.65 7.99 -2.38 -0.02 1.63 16 33 H 0.07 1.70 8.00 -2.39 -0.02 1.68 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 0.85 6.80 -2.39 -0.02 0.83 16 36 H 0.04 0.58 7.81 -2.39 -0.02 0.56 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 0.86 7.67 -2.39 -0.02 0.84 16 39 H 0.04 0.51 8.00 -2.39 -0.02 0.49 16 40 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.04 0.57 7.57 -2.39 -0.02 0.55 16 45 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.10 5.26 6.16 -6.32 -0.04 5.22 16 47 H 0.09 5.65 6.17 -2.91 -0.02 5.63 16 Total: -1.00 -74.83 386.26 -2.06 -76.89 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.65 Total: 34.35 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 5.44 Total: -24.11 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -7.48 Total: -92.26 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 16 Polarization: -34.61 SS G_CDS: -1.41 Total: -36.02 kcal Total: -74.83 -2.06 -76.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225433126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.622 kcal (2) G-P(sol) polarization free energy of solvation -74.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds