Wall clock time and date at job start Tue Mar 31 2020 04:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86796 * 120.00019 * 2 1 4 4 H 1.48503 * 109.47417 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47151 * 300.00019 * 3 2 1 6 6 H 1.48502 * 109.47138 * 60.00300 * 3 2 1 7 7 C 1.39894 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99611 * 196.81496 * 7 2 1 9 9 C 1.41141 * 120.00098 * 16.81793 * 7 2 1 10 10 C 1.40873 * 120.16106 * 25.37083 * 9 7 2 11 11 C 1.36354 * 119.82850 * 180.27330 * 10 9 7 12 12 C 1.39508 * 120.16862 * 359.45843 * 11 10 9 13 13 N 1.39139 * 119.83861 * 180.27624 * 12 11 10 14 14 C 1.34781 * 120.00015 * 40.97444 * 13 12 11 15 15 S 1.71199 * 119.99826 * 5.74545 * 14 13 12 16 16 N 1.34776 * 120.00048 * 185.74753 * 14 13 12 17 17 C 1.46495 * 119.99866 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47291 * 179.97438 * 17 16 14 19 19 N 1.46501 * 109.47584 * 179.97438 * 18 17 16 20 20 C 1.46757 * 124.34980 * 269.72717 * 19 18 17 21 21 C 1.54663 * 105.38329 * 162.85057 * 20 19 18 22 22 C 1.54632 * 101.68080 * 25.76745 * 21 20 19 23 23 C 1.34420 * 124.34717 * 90.02333 * 19 18 17 24 24 O 1.21284 * 124.94035 * 0.43605 * 23 19 18 25 25 C 1.39507 * 120.32487 * 0.25590 * 12 11 10 26 26 C 1.36352 * 120.16855 * 0.02562 * 25 12 11 27 27 H 0.96995 * 119.99797 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.08730 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.91645 * 179.73678 * 11 10 9 30 30 H 0.97000 * 120.00418 * 220.97629 * 13 12 11 31 31 H 0.96998 * 119.99856 * 0.02562 * 16 14 13 32 32 H 1.09000 * 109.47635 * 300.00172 * 17 16 14 33 33 H 1.08997 * 109.47069 * 60.00237 * 17 16 14 34 34 H 1.09001 * 109.47476 * 300.00472 * 18 17 16 35 35 H 1.09011 * 109.46735 * 60.00018 * 18 17 16 36 36 H 1.08998 * 110.24865 * 281.97953 * 20 19 18 37 37 H 1.09005 * 110.24677 * 43.98387 * 20 19 18 38 38 H 1.08997 * 111.19564 * 267.59817 * 21 20 19 39 39 H 1.09002 * 110.82184 * 143.77435 * 21 20 19 40 40 H 1.08998 * 110.48537 * 216.30783 * 22 21 20 41 41 H 1.08997 * 110.59628 * 93.72157 * 22 21 20 42 42 H 1.08001 * 119.91402 * 180.02562 * 25 12 11 43 43 H 1.08003 * 120.08428 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8841 2.3964 -1.2124 6 1 1.8841 2.3964 1.2126 7 6 2.0083 -1.2115 -0.0005 8 1 3.0537 -1.2316 0.2700 9 6 1.3479 -2.4075 -0.3547 10 6 0.2148 -2.3695 -1.1908 11 6 -0.4214 -3.5286 -1.5242 12 6 0.0539 -4.7510 -1.0487 13 7 -0.5971 -5.9300 -1.3978 14 6 -1.0462 -6.1046 -2.6566 15 16 -0.6881 -4.9428 -3.8619 16 7 -1.7772 -7.1937 -2.9663 17 6 -2.2658 -7.3831 -4.3343 18 6 -3.0610 -8.6876 -4.4159 19 7 -3.5502 -8.8768 -5.7838 20 6 -4.8435 -8.3878 -6.2758 21 6 -4.7344 -8.4198 -7.8182 22 6 -3.6710 -9.5214 -8.0341 23 6 -2.8745 -9.5254 -6.7480 24 8 -1.7851 -10.0395 -6.6071 25 6 1.1790 -4.7970 -0.2251 26 6 1.8222 -3.6457 0.1214 27 1 -0.4849 0.8400 0.0004 28 1 -0.1516 -1.4243 -1.5636 29 1 -1.2928 -3.5007 -2.1617 30 1 -0.7278 -6.6264 -0.7354 31 1 -1.9804 -7.8517 -2.2833 32 1 -2.9090 -6.5472 -4.6095 33 1 -1.4192 -7.4307 -5.0192 34 1 -2.4175 -9.5233 -4.1409 35 1 -3.9077 -8.6404 -3.7309 36 1 -5.6473 -9.0420 -5.9382 37 1 -5.0167 -7.3679 -5.9322 38 1 -4.3891 -7.4625 -8.2088 39 1 -5.6860 -8.7027 -8.2682 40 1 -3.0295 -9.2720 -8.8793 41 1 -4.1477 -10.4891 -8.1906 42 1 1.5415 -5.7470 0.1389 43 1 2.6934 -3.6830 0.7587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225811816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:12 Heat of formation + Delta-G solvation = 12.849772 kcal Electronic energy + Delta-G solvation = -24773.379527 eV Core-core repulsion = 21137.547350 eV Total energy + Delta-G solvation = -3635.832177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.73538 -39.16248 -37.48770 -36.71476 -35.38460 -33.60390 -32.76153 -29.59146 -29.51025 -28.34776 -27.94427 -25.15703 -23.64195 -23.43363 -22.30814 -21.19709 -20.62886 -19.74696 -18.10422 -17.52482 -17.35620 -16.94766 -16.75061 -15.91745 -15.40908 -15.08566 -15.02198 -14.90780 -14.13473 -13.98716 -13.87935 -13.67957 -13.60152 -12.99386 -12.81773 -12.68878 -12.41918 -12.09144 -11.95516 -11.85652 -11.67382 -11.44012 -11.26462 -11.12916 -10.89993 -10.59397 -10.55713 -10.12865 -9.85478 -9.56764 -9.23793 -9.17807 -9.04298 -7.71287 -7.45955 -7.03174 -6.81349 -6.29009 -4.35042 1.69125 2.14044 2.33612 2.62242 2.80259 3.08021 3.12358 3.13924 3.17546 3.27335 3.91496 3.93205 3.96692 4.04666 4.38729 4.52036 4.55128 4.61084 4.66759 4.96512 5.05933 5.09642 5.28950 5.38790 5.55755 5.56269 5.67301 5.73230 6.01746 6.09842 6.25499 6.35751 6.54443 6.70779 6.96921 7.02002 7.09437 7.20066 7.28900 7.58626 7.65978 7.81983 7.92782 8.05546 8.18633 8.26607 8.63131 8.85558 8.96028 10.12950 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024960 B = 0.002128 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.505492 B =13152.847738 C =13688.206515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.449 4.449 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.163 4.163 11 C -0.038 4.038 12 C -0.037 4.037 13 N -0.589 5.589 14 C 0.544 3.456 15 S -0.638 6.638 16 N -0.699 5.699 17 C 0.116 3.884 18 C 0.115 3.885 19 N -0.616 5.616 20 C 0.100 3.900 21 C -0.132 4.132 22 C -0.155 4.155 23 C 0.516 3.484 24 O -0.526 6.526 25 C -0.081 4.081 26 C -0.225 4.225 27 H 0.282 0.718 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.390 0.610 31 H 0.391 0.609 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.745 -16.216 -8.393 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.478 4.478 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.183 4.183 11 C -0.060 4.060 12 C -0.130 4.130 13 N -0.208 5.208 14 C 0.186 3.814 15 S -0.510 6.510 16 N -0.332 5.332 17 C -0.010 4.010 18 C -0.008 4.008 19 N -0.351 5.351 20 C -0.023 4.023 21 C -0.170 4.170 22 C -0.195 4.195 23 C 0.304 3.696 24 O -0.402 6.402 25 C -0.102 4.102 26 C -0.246 4.246 27 H 0.093 0.907 28 H 0.139 0.861 29 H 0.128 0.872 30 H 0.225 0.775 31 H 0.226 0.774 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.116 -15.493 -9.151 22.266 hybrid contribution -0.045 -0.495 1.350 1.438 sum -13.160 -15.988 -7.802 22.129 Atomic orbital electron populations 1.69855 1.07629 1.29380 1.33906 1.25975 0.94792 1.01537 0.92200 0.86236 0.81025 0.80750 0.78616 1.18298 1.19532 1.19976 1.19664 0.97834 0.91195 1.39140 0.90163 1.17731 0.91047 0.91978 0.87652 1.20871 0.99452 0.96761 1.01239 1.20494 0.99112 0.90748 0.95628 1.16890 1.00390 0.82901 1.12842 1.41978 1.53059 1.18884 1.06880 1.22306 0.82830 0.87666 0.88595 1.93303 1.75329 1.42936 1.39455 1.44547 1.53612 1.22310 1.12746 1.21877 0.99741 0.97492 0.81841 1.21450 0.99002 0.97829 0.82518 1.48074 1.19696 1.56488 1.10849 1.22200 0.84759 1.00686 0.94645 1.22646 0.99892 0.99785 0.94702 1.22329 0.98765 1.01401 0.96990 1.21020 0.85223 0.77002 0.86329 1.90764 1.19889 1.46147 1.83396 1.19976 0.93731 0.97110 0.99371 1.20474 1.03770 0.92548 1.07781 0.90720 0.86148 0.87185 0.77452 0.77352 0.89657 0.89537 0.89421 0.89683 0.90819 0.89829 0.89482 0.89033 0.87795 0.87800 0.89458 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.06 10.95 55.55 0.61 -19.45 16 2 C 0.07 1.84 5.15 -17.34 -0.09 1.75 16 3 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.45 -11.82 9.04 -37.86 -0.34 -12.16 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 9 C 0.12 3.17 5.57 -106.80 -0.59 2.57 16 10 C -0.16 -4.33 8.63 -39.26 -0.34 -4.67 16 11 C -0.04 -0.94 7.76 -39.79 -0.31 -1.25 16 12 C -0.04 -0.82 5.94 -83.60 -0.50 -1.32 16 13 N -0.59 -10.04 5.29 -11.28 -0.06 -10.10 16 14 C 0.54 9.36 7.73 -86.91 -0.67 8.69 16 15 S -0.64 -14.29 24.96 -107.50 -2.68 -16.97 16 16 N -0.70 -8.31 5.56 -62.04 -0.34 -8.65 16 17 C 0.12 1.32 5.45 -4.05 -0.02 1.30 16 18 C 0.12 0.92 6.05 -4.04 -0.02 0.90 16 19 N -0.62 -5.00 2.93 -172.30 -0.51 -5.50 16 20 C 0.10 0.48 7.35 -3.03 -0.02 0.46 16 21 C -0.13 -0.52 7.19 -25.00 -0.18 -0.70 16 22 C -0.15 -0.92 6.86 -26.74 -0.18 -1.10 16 23 C 0.52 5.32 8.02 -10.86 -0.09 5.23 16 24 O -0.53 -7.88 17.59 5.55 0.10 -7.79 16 25 C -0.08 -1.77 9.90 -39.79 -0.39 -2.17 16 26 C -0.23 -5.44 9.74 -39.26 -0.38 -5.82 16 27 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 28 H 0.12 3.36 6.18 -52.48 -0.32 3.03 16 29 H 0.11 2.72 6.16 -47.11 -0.29 2.43 16 30 H 0.39 5.02 8.84 -40.82 -0.36 4.66 16 31 H 0.39 3.18 8.49 -40.82 -0.35 2.83 16 32 H 0.09 1.05 7.99 -51.93 -0.42 0.63 16 33 H 0.09 1.27 7.99 -51.93 -0.41 0.86 16 34 H 0.09 0.76 7.92 -51.93 -0.41 0.35 16 35 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 43 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -34.97 371.46 -12.38 -47.35 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -5.92 Total: 10.25 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -4.14 Total: -8.29 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.30 Total: -43.71 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.10 Total: -7.79 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: -14.29 SS G_CDS: -2.68 Total: -16.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.97 -12.38 -47.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225811816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.200 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds