Wall clock time and date at job start Tue Mar 31 2020 04:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86796 * 120.00019 * 2 1 4 4 H 1.48503 * 109.47417 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47151 * 300.00019 * 3 2 1 6 6 H 1.48502 * 109.47138 * 60.00300 * 3 2 1 7 7 C 1.39894 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99611 * 196.81496 * 7 2 1 9 9 C 1.41141 * 120.00098 * 16.81793 * 7 2 1 10 10 C 1.40873 * 120.16106 * 25.37083 * 9 7 2 11 11 C 1.36354 * 119.82850 * 180.27330 * 10 9 7 12 12 C 1.39508 * 120.16862 * 359.45843 * 11 10 9 13 13 N 1.39139 * 119.83861 * 180.27624 * 12 11 10 14 14 C 1.34781 * 120.00015 * 40.97444 * 13 12 11 15 15 S 1.71199 * 119.99826 * 5.74545 * 14 13 12 16 16 N 1.34776 * 120.00048 * 185.74753 * 14 13 12 17 17 C 1.46495 * 119.99866 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47291 * 179.97438 * 17 16 14 19 19 N 1.46501 * 109.47584 * 179.97438 * 18 17 16 20 20 C 1.46757 * 124.34980 * 269.72717 * 19 18 17 21 21 C 1.54663 * 105.38329 * 162.85057 * 20 19 18 22 22 C 1.54632 * 101.68080 * 25.76745 * 21 20 19 23 23 C 1.34420 * 124.34717 * 90.02333 * 19 18 17 24 24 O 1.21284 * 124.94035 * 0.43605 * 23 19 18 25 25 C 1.39507 * 120.32487 * 0.25590 * 12 11 10 26 26 C 1.36352 * 120.16855 * 0.02562 * 25 12 11 27 27 H 0.96995 * 119.99797 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.08730 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.91645 * 179.73678 * 11 10 9 30 30 H 0.97000 * 120.00418 * 220.97629 * 13 12 11 31 31 H 0.96998 * 119.99856 * 0.02562 * 16 14 13 32 32 H 1.09000 * 109.47635 * 300.00172 * 17 16 14 33 33 H 1.08997 * 109.47069 * 60.00237 * 17 16 14 34 34 H 1.09001 * 109.47476 * 300.00472 * 18 17 16 35 35 H 1.09011 * 109.46735 * 60.00018 * 18 17 16 36 36 H 1.08998 * 110.24865 * 281.97953 * 20 19 18 37 37 H 1.09005 * 110.24677 * 43.98387 * 20 19 18 38 38 H 1.08997 * 111.19564 * 267.59817 * 21 20 19 39 39 H 1.09002 * 110.82184 * 143.77435 * 21 20 19 40 40 H 1.08998 * 110.48537 * 216.30783 * 22 21 20 41 41 H 1.08997 * 110.59628 * 93.72157 * 22 21 20 42 42 H 1.08001 * 119.91402 * 180.02562 * 25 12 11 43 43 H 1.08003 * 120.08428 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8841 2.3964 -1.2124 6 1 1.8841 2.3964 1.2126 7 6 2.0083 -1.2115 -0.0005 8 1 3.0537 -1.2316 0.2700 9 6 1.3479 -2.4075 -0.3547 10 6 0.2148 -2.3695 -1.1908 11 6 -0.4214 -3.5286 -1.5242 12 6 0.0539 -4.7510 -1.0487 13 7 -0.5971 -5.9300 -1.3978 14 6 -1.0462 -6.1046 -2.6566 15 16 -0.6881 -4.9428 -3.8619 16 7 -1.7772 -7.1937 -2.9663 17 6 -2.2658 -7.3831 -4.3343 18 6 -3.0610 -8.6876 -4.4159 19 7 -3.5502 -8.8768 -5.7838 20 6 -4.8435 -8.3878 -6.2758 21 6 -4.7344 -8.4198 -7.8182 22 6 -3.6710 -9.5214 -8.0341 23 6 -2.8745 -9.5254 -6.7480 24 8 -1.7851 -10.0395 -6.6071 25 6 1.1790 -4.7970 -0.2251 26 6 1.8222 -3.6457 0.1214 27 1 -0.4849 0.8400 0.0004 28 1 -0.1516 -1.4243 -1.5636 29 1 -1.2928 -3.5007 -2.1617 30 1 -0.7278 -6.6264 -0.7354 31 1 -1.9804 -7.8517 -2.2833 32 1 -2.9090 -6.5472 -4.6095 33 1 -1.4192 -7.4307 -5.0192 34 1 -2.4175 -9.5233 -4.1409 35 1 -3.9077 -8.6404 -3.7309 36 1 -5.6473 -9.0420 -5.9382 37 1 -5.0167 -7.3679 -5.9322 38 1 -4.3891 -7.4625 -8.2088 39 1 -5.6860 -8.7027 -8.2682 40 1 -3.0295 -9.2720 -8.8793 41 1 -4.1477 -10.4891 -8.1906 42 1 1.5415 -5.7470 0.1389 43 1 2.6934 -3.6830 0.7587 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225811816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:11 Heat of formation + Delta-G solvation = -9.818242 kcal Electronic energy + Delta-G solvation = -24774.362486 eV Core-core repulsion = 21137.547350 eV Total energy + Delta-G solvation = -3636.815135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43081 -40.72075 -39.03943 -37.57531 -36.78687 -35.13698 -33.79557 -31.44290 -31.09076 -29.53297 -28.45530 -26.83906 -25.12204 -24.49534 -23.01124 -22.76519 -22.36983 -20.54836 -19.46233 -19.23387 -18.90079 -17.84763 -17.40880 -17.12417 -16.76237 -16.67146 -16.19874 -15.95601 -15.72462 -15.35361 -14.75736 -14.61219 -14.45104 -14.24179 -14.13475 -13.94494 -13.66098 -13.43253 -13.18504 -13.16266 -12.90659 -12.78768 -12.48281 -12.29575 -12.23101 -12.14014 -11.84639 -11.67141 -11.39815 -11.05333 -10.91697 -10.55682 -9.86266 -9.57970 -9.21754 -8.84770 -8.65821 -8.10623 -6.30234 0.15199 0.85521 1.08771 1.24765 1.35524 1.39448 1.53060 1.54763 1.60383 2.10946 2.20871 2.72594 2.74248 3.40923 3.62424 3.68076 3.76498 3.90714 4.08361 4.21939 4.27798 4.39294 4.52446 4.57928 4.65057 4.71139 4.75834 4.79672 4.91327 5.03369 5.11104 5.11821 5.15315 5.24511 5.34512 5.41534 5.49856 5.71044 5.78703 5.98594 6.05479 6.12202 6.18937 6.35684 6.55569 6.70641 6.92436 7.03969 7.07960 8.30896 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024960 B = 0.002128 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.505492 B =13152.847738 C =13688.206515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.032 3.968 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.487 4.487 8 H 0.081 0.919 9 C 0.088 3.912 10 C -0.189 4.189 11 C -0.043 4.043 12 C -0.022 4.022 13 N -0.578 5.578 14 C 0.573 3.427 15 S -0.740 6.740 16 N -0.661 5.661 17 C 0.121 3.879 18 C 0.122 3.878 19 N -0.616 5.616 20 C 0.094 3.906 21 C -0.124 4.124 22 C -0.150 4.150 23 C 0.500 3.500 24 O -0.586 6.586 25 C -0.076 4.076 26 C -0.238 4.238 27 H 0.289 0.711 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.419 0.581 31 H 0.419 0.581 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.557 -18.440 -7.736 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.184 4.184 3 Si 0.803 3.197 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.516 4.516 8 H 0.099 0.901 9 C 0.085 3.915 10 C -0.210 4.210 11 C -0.065 4.065 12 C -0.116 4.116 13 N -0.200 5.200 14 C 0.210 3.790 15 S -0.614 6.614 16 N -0.293 5.293 17 C -0.004 4.004 18 C -0.002 4.002 19 N -0.349 5.349 20 C -0.027 4.027 21 C -0.162 4.162 22 C -0.190 4.190 23 C 0.290 3.710 24 O -0.466 6.466 25 C -0.096 4.096 26 C -0.258 4.258 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.259 0.741 31 H 0.260 0.740 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.140 0.860 40 H 0.119 0.881 41 H 0.143 0.857 42 H 0.148 0.852 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.010 -17.790 -8.466 24.768 hybrid contribution 0.374 -0.056 1.094 1.157 sum -14.636 -17.846 -7.372 24.229 Atomic orbital electron populations 1.69910 1.09052 1.30621 1.34620 1.26827 0.95541 1.04726 0.91267 0.85151 0.79516 0.76123 0.78909 1.17981 1.19329 1.18621 1.19902 0.98115 0.92342 1.41204 0.90121 1.18057 0.91538 0.93475 0.88382 1.20746 1.00812 0.96612 1.02820 1.20504 0.98949 0.91563 0.95477 1.16822 0.99999 0.83506 1.11269 1.41578 1.52698 1.18358 1.07364 1.21650 0.82353 0.87584 0.87413 1.93628 1.78708 1.46579 1.42456 1.44407 1.50376 1.20626 1.13922 1.21899 0.98675 0.99504 0.80333 1.21450 0.99906 0.95187 0.83634 1.48287 1.20560 1.55444 1.10585 1.22507 0.83604 1.01471 0.95155 1.22692 1.00513 0.98688 0.94288 1.22379 0.98788 1.03343 0.94485 1.21854 0.84768 0.76235 0.88117 1.90721 1.22514 1.48815 1.84567 1.20316 0.92798 0.98194 0.98341 1.20719 1.04493 0.92549 1.08072 0.90051 0.88690 0.87947 0.74086 0.74023 0.90167 0.93027 0.89810 0.85740 0.88099 0.89386 0.90173 0.85964 0.88086 0.85720 0.85171 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.57 10.95 21.82 0.24 -43.33 16 2 C 0.03 1.65 5.15 85.23 0.44 2.09 16 3 Si 0.98 38.99 29.59 68.60 2.03 41.02 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.49 -26.56 9.04 23.38 0.21 -26.35 16 8 H 0.08 4.21 7.90 -2.91 -0.02 4.18 16 9 C 0.09 4.87 5.57 -21.28 -0.12 4.75 16 10 C -0.19 -10.57 8.63 22.48 0.19 -10.38 16 11 C -0.04 -2.18 7.76 22.14 0.17 -2.01 16 12 C -0.02 -0.94 5.94 38.59 0.23 -0.71 16 13 N -0.58 -18.10 5.29 -189.61 -1.00 -19.10 16 14 C 0.57 18.74 7.73 179.05 1.38 20.12 16 15 S -0.74 -33.95 24.96 -56.49 -1.41 -35.36 16 16 N -0.66 -13.87 5.56 -350.18 -1.95 -15.82 16 17 C 0.12 2.59 5.45 86.38 0.47 3.06 16 18 C 0.12 1.62 6.05 86.38 0.52 2.14 16 19 N -0.62 -8.74 2.93 -817.62 -2.40 -11.14 16 20 C 0.09 0.60 7.35 86.90 0.64 1.24 16 21 C -0.12 -0.63 7.19 31.72 0.23 -0.40 16 22 C -0.15 -1.54 6.86 30.59 0.21 -1.33 16 23 C 0.50 9.98 8.02 87.90 0.70 10.68 16 24 O -0.59 -17.99 17.59 -3.04 -0.05 -18.05 16 25 C -0.08 -3.18 9.90 22.14 0.22 -2.96 16 26 C -0.24 -11.46 9.74 22.48 0.22 -11.24 16 27 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 28 H 0.10 5.68 6.18 -2.91 -0.02 5.66 16 29 H 0.10 5.26 6.16 -6.32 -0.04 5.22 16 30 H 0.42 8.85 8.84 -92.71 -0.82 8.03 16 31 H 0.42 4.88 8.49 -92.71 -0.79 4.09 16 32 H 0.08 1.88 7.99 -2.39 -0.02 1.87 16 33 H 0.05 1.54 7.99 -2.39 -0.02 1.52 16 34 H 0.08 1.25 7.92 -2.39 -0.02 1.23 16 35 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -84.02 371.46 0.61 -83.41 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.58 Total: 29.67 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 5.72 Total: -11.29 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -5.11 Total: -89.40 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.05 Total: -18.05 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Atomic # 16 Polarization: -33.95 SS G_CDS: -1.41 Total: -35.36 kcal Total: -84.02 0.61 -83.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225811816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.591 kcal (2) G-P(sol) polarization free energy of solvation -84.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds