Wall clock time and date at job start Tue Mar 31 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48503 * 109.47088 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47512 * 299.99910 * 3 2 1 6 6 H 1.48505 * 109.47558 * 59.99917 * 3 2 1 7 7 C 1.38943 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99798 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00380 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99725 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00431 * 180.02562 * 10 9 7 13 13 H 1.09001 * 115.56119 * 62.41587 * 12 10 9 14 14 C 1.53119 * 117.51476 * 208.22260 * 12 10 9 15 15 C 1.52375 * 117.51522 * 276.67959 * 12 10 9 16 16 C 1.53771 * 121.19778 * 142.02552 * 15 12 10 17 17 C 1.54490 * 102.19701 * 190.01779 * 16 15 12 18 18 C 1.51421 * 105.29682 * 25.56482 * 17 16 15 19 19 C 1.38454 * 130.36316 * 162.74316 * 18 17 16 20 20 C 1.38192 * 120.25946 * 180.19892 * 19 18 17 21 21 Br 1.89097 * 120.05658 * 180.27992 * 20 19 18 22 22 C 1.38343 * 119.88769 * 0.25396 * 20 19 18 23 23 C 1.38071 * 119.93514 * 0.02737 * 22 20 19 24 24 C 1.38403 * 109.78966 * 343.43219 * 18 17 16 25 25 H 0.97003 * 119.99893 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00101 * 0.02562 * 9 7 2 27 27 H 1.09003 * 117.52068 * 0.02562 * 14 12 10 28 28 H 1.09005 * 117.51786 * 214.88750 * 14 12 10 29 29 H 1.08998 * 110.85891 * 308.18958 * 16 15 12 30 30 H 1.08998 * 110.86062 * 71.84186 * 16 15 12 31 31 H 1.08995 * 110.29067 * 144.71124 * 17 16 15 32 32 H 1.09008 * 110.28772 * 266.82617 * 17 16 15 33 33 H 1.08005 * 119.86499 * 0.47619 * 19 18 17 34 34 H 1.08000 * 120.03115 * 180.02562 * 22 20 19 35 35 H 1.08007 * 119.85480 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3905 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0000 13 1 0.6146 -5.0424 -0.8719 14 6 1.9261 -6.0739 0.6421 15 6 0.7551 -5.3942 1.3419 16 6 -0.6077 -6.0942 1.4729 17 6 -0.7703 -6.2078 3.0050 18 6 0.0653 -5.0835 3.5799 19 6 0.0502 -4.5086 4.8393 20 6 0.9154 -3.4748 5.1433 21 35 0.8953 -2.6990 6.8677 22 6 1.7966 -3.0087 4.1841 23 6 1.8091 -3.5769 2.9258 24 6 0.9428 -4.6130 2.6185 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3906 -0.0002 27 1 2.9197 -5.9265 1.0654 28 1 1.7460 -7.0505 0.1926 29 1 -1.4010 -5.4828 1.0428 30 1 -0.5832 -7.0812 1.0110 31 1 -1.8168 -6.0853 3.2842 32 1 -0.3952 -7.1697 3.3547 33 1 -0.6375 -4.8725 5.5884 34 1 2.4741 -2.2012 4.4193 35 1 2.4980 -3.2123 2.1781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253395676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:47 Heat of formation + Delta-G solvation = 11.340628 kcal Electronic energy + Delta-G solvation = -20795.455893 eV Core-core repulsion = 17611.816464 eV Total energy + Delta-G solvation = -3183.639429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 335.026 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50655 -38.23753 -36.57257 -34.07245 -33.46100 -31.60997 -31.18726 -29.70065 -28.26913 -25.70496 -24.64673 -22.79342 -22.48293 -20.75412 -19.56567 -18.82100 -17.83206 -16.36348 -15.77614 -15.44740 -14.83983 -14.81748 -14.52428 -13.99325 -13.79677 -13.25101 -13.07556 -12.79147 -12.69395 -12.20987 -11.92782 -11.59546 -11.55294 -11.43002 -11.13956 -10.98624 -10.85228 -10.62081 -10.38279 -10.30011 -10.12674 -9.92634 -9.81619 -9.53695 -8.57871 -8.47543 -8.07004 -8.00674 -6.45712 -3.86520 1.29572 1.58256 1.77235 3.12505 3.25061 3.31180 3.57183 3.87465 4.09249 4.25991 4.47567 4.63445 4.85053 4.90655 5.09370 5.16882 5.25592 5.33909 5.40077 5.56242 5.62219 5.71297 5.83241 5.91779 5.93841 6.04855 6.08056 6.16559 6.30685 6.35821 6.45302 6.47850 6.64941 6.89011 7.11580 7.50975 8.01051 8.55837 9.12633 9.50530 10.01061 10.71294 Molecular weight = 335.03amu Principal moments of inertia in cm(-1) A = 0.009595 B = 0.005560 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.523711 B = 5034.613865 C = 7181.428196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.925 3.075 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.303 4.303 8 H 0.104 0.896 9 N -0.549 5.549 10 C 0.464 3.536 11 O -0.595 6.595 12 C -0.150 4.150 13 H 0.118 0.882 14 C -0.127 4.127 15 C -0.086 4.086 16 C -0.084 4.084 17 C -0.073 4.073 18 C -0.094 4.094 19 C -0.089 4.089 20 C -0.089 4.089 21 Br -0.064 7.064 22 C -0.086 4.086 23 C -0.081 4.081 24 C -0.038 4.038 25 H 0.272 0.728 26 H 0.394 0.606 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.945 -10.609 10.372 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.175 4.175 3 Si 0.752 3.248 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.122 0.878 9 N -0.183 5.183 10 C 0.251 3.749 11 O -0.482 6.482 12 C -0.171 4.171 13 H 0.136 0.864 14 C -0.164 4.164 15 C -0.087 4.087 16 C -0.121 4.121 17 C -0.110 4.110 18 C -0.095 4.095 19 C -0.108 4.108 20 C -0.168 4.168 21 Br 0.021 6.979 22 C -0.106 4.106 23 C -0.099 4.099 24 C -0.038 4.038 25 H 0.082 0.918 26 H 0.227 0.773 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.292 -10.124 11.024 15.326 hybrid contribution -0.261 0.908 -0.431 1.038 sum -3.552 -9.216 10.594 14.484 Atomic orbital electron populations 1.69628 1.05948 1.28151 1.49632 1.25257 0.95572 0.99700 0.97007 0.85864 0.79798 0.81287 0.77823 1.19141 1.20687 1.20648 1.19738 0.93340 0.82167 1.47959 0.87835 1.41865 1.09335 1.04365 1.62692 1.18867 0.87551 0.83881 0.84649 1.90534 1.13611 1.87063 1.56983 1.22283 1.03229 0.95564 0.96029 0.86369 1.22910 0.96725 0.95548 1.01196 1.20401 0.96240 1.01415 0.90614 1.21844 0.94668 1.00165 0.95405 1.20995 0.99034 0.96230 0.94773 1.20452 0.98142 0.97778 0.93129 1.20319 0.98718 0.95627 0.96178 1.21518 1.02475 1.00848 0.91953 1.96628 1.98647 1.82910 1.19691 1.20995 0.97892 0.99472 0.92252 1.21157 0.98411 0.94063 0.96317 1.19756 0.95330 0.94902 0.93840 0.91830 0.77297 0.87769 0.88127 0.90148 0.90340 0.90547 0.90172 0.85692 0.85042 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.99 13.05 55.50 0.72 -23.26 16 2 C 0.03 0.72 5.50 -17.47 -0.10 0.62 16 3 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.30 -8.17 9.68 -14.94 -0.14 -8.31 16 8 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 9 N -0.55 -13.54 5.16 -10.96 -0.06 -13.60 16 10 C 0.46 10.69 4.69 -10.99 -0.05 10.64 16 11 O -0.60 -15.67 15.50 5.54 0.09 -15.59 16 12 C -0.15 -2.64 6.05 -92.03 -0.56 -3.20 16 13 H 0.12 1.84 8.14 -51.93 -0.42 1.41 16 14 C -0.13 -1.92 9.77 -26.98 -0.26 -2.19 16 15 C -0.09 -1.33 2.34 -155.81 -0.36 -1.69 16 16 C -0.08 -0.99 6.85 -25.55 -0.18 -1.17 16 17 C -0.07 -0.84 6.77 -26.75 -0.18 -1.02 16 18 C -0.09 -1.40 6.15 -104.13 -0.64 -2.04 16 19 C -0.09 -1.30 9.78 -39.52 -0.39 -1.68 16 20 C -0.09 -1.41 6.22 -39.56 -0.25 -1.65 16 21 Br -0.06 -0.88 33.70 -68.01 -2.29 -3.17 16 22 C -0.09 -1.53 9.79 -39.60 -0.39 -1.92 16 23 C -0.08 -1.57 9.19 -39.54 -0.36 -1.93 16 24 C -0.04 -0.66 5.79 -104.39 -0.60 -1.26 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 27 H 0.10 1.77 7.95 -51.93 -0.41 1.36 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 34 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 35 H 0.15 3.33 5.29 -52.48 -0.28 3.05 16 LS Contribution 318.41 15.07 4.80 4.80 Total: -1.00 -29.50 318.41 -10.13 -39.63 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -3.90 Total: 12.23 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -4.46 Total: -16.81 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.67 Total: -36.86 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: 0.09 Total: -15.59 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -2.29 Total: -3.17 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.50 -10.13 -39.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253395676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.970 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds