Wall clock time and date at job start Tue Mar 31 2020 05:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48497 * 109.47165 * 264.79730 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21279 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99852 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.46585 * 180.02562 * 15 13 12 17 17 C 1.53007 * 109.46898 * 180.02562 * 16 15 13 18 18 H 1.08995 * 109.47100 * 54.99456 * 17 16 15 19 19 O 1.42901 * 109.46665 * 294.99656 * 17 16 15 20 20 C 1.50701 * 109.47122 * 174.99719 * 17 16 15 21 21 C 1.38237 * 119.99785 * 84.72248 * 20 17 16 22 22 C 1.38236 * 119.99713 * 179.78739 * 21 20 17 23 23 C 1.38228 * 120.00126 * 0.46410 * 22 21 20 24 24 C 1.50696 * 120.00043 * 179.79102 * 23 22 21 25 25 C 1.52998 * 109.47371 * 239.97779 * 24 23 22 26 26 C 1.53001 * 109.47415 * 359.97438 * 24 23 22 27 27 C 1.53004 * 109.47073 * 119.97764 * 24 23 22 28 28 C 1.38231 * 120.00030 * 359.76664 * 23 22 21 29 29 C 1.38224 * 120.00195 * 264.99828 * 20 17 16 30 30 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 31 31 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 32 32 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 33 33 H 0.96997 * 120.00137 * 180.27656 * 7 6 4 34 34 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 35 35 H 1.09000 * 109.46993 * 299.99949 * 15 13 12 36 36 H 1.09000 * 109.46898 * 60.00268 * 15 13 12 37 37 H 1.09000 * 109.47289 * 299.99616 * 16 15 13 38 38 H 1.08992 * 109.47521 * 59.99801 * 16 15 13 39 39 H 0.96704 * 114.00027 * 299.99950 * 19 17 16 40 40 H 1.08006 * 120.00168 * 359.97438 * 21 20 17 41 41 H 1.08003 * 119.99696 * 180.25917 * 22 21 20 42 42 H 1.09001 * 109.47018 * 59.99586 * 25 24 23 43 43 H 1.08997 * 109.47783 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.46858 * 300.00154 * 25 24 23 45 45 H 1.09003 * 109.47064 * 59.99867 * 26 24 23 46 46 H 1.08992 * 109.47399 * 179.97438 * 26 24 23 47 47 H 1.09001 * 109.46647 * 300.00213 * 26 24 23 48 48 H 1.09004 * 109.46903 * 60.00343 * 27 24 23 49 49 H 1.09005 * 109.47172 * 179.97438 * 27 24 23 50 50 H 1.08993 * 109.47096 * 299.99862 * 27 24 23 51 51 H 1.07998 * 120.00196 * 179.97438 * 28 23 22 52 52 H 1.08002 * 119.99826 * 359.97438 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0150 -1.9586 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5877 16 6 2.7012 0.2544 -4.7587 17 6 3.2102 -0.4672 -6.0082 18 1 2.5882 -1.3411 -6.2018 19 8 4.5622 -0.8812 -5.8016 20 6 3.1456 0.4669 -7.1891 21 6 4.1828 1.3483 -7.4306 22 6 4.1256 2.2021 -8.5163 23 6 3.0269 2.1811 -9.3549 24 6 2.9624 3.1151 -10.5357 25 6 1.7367 4.0211 -10.4031 26 6 4.2285 3.9732 -10.5771 27 6 2.8566 2.2995 -11.8259 28 6 1.9876 1.3031 -9.1106 29 6 2.0468 0.4463 -8.0274 30 1 -0.3633 0.4796 0.9088 31 1 -0.3633 0.5473 -0.8698 32 1 -0.3634 -1.0269 -0.0392 33 1 0.9967 1.3391 3.4805 34 1 2.2491 -1.6318 -1.1525 35 1 3.6482 -1.1214 -3.3984 36 1 1.9761 -1.5507 -3.8325 37 1 1.7023 0.6472 -4.9481 38 1 3.3742 1.0759 -4.5136 39 1 5.1735 -0.1533 -5.6235 40 1 5.0392 1.3678 -6.7728 41 1 4.9378 2.8878 -8.7074 42 1 1.8121 4.6021 -9.4839 43 1 1.6902 4.6970 -11.2569 44 1 0.8346 3.4099 -10.3736 45 1 5.1019 3.3278 -10.6716 46 1 4.1821 4.6484 -11.4314 47 1 4.3038 4.5541 -9.6579 48 1 1.9545 1.6884 -11.7964 49 1 2.8095 2.9752 -12.6800 50 1 3.7298 1.6542 -11.9204 51 1 1.1290 1.2870 -9.7656 52 1 1.2346 -0.2395 -7.8363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253404634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:23 Heat of formation + Delta-G solvation = -98.477231 kcal Electronic energy + Delta-G solvation = -28049.200397 eV Core-core repulsion = 24205.161287 eV Total energy + Delta-G solvation = -3844.039111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.209 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.36426 -38.99763 -37.99659 -35.98349 -34.79328 -32.76762 -32.28904 -31.30082 -30.57056 -28.94722 -27.72447 -27.59195 -26.29401 -25.21029 -23.24994 -22.60353 -21.52845 -20.71656 -19.45656 -19.31729 -17.66617 -17.05700 -16.20028 -16.06884 -15.63639 -15.23311 -15.08368 -15.02004 -14.62231 -14.38442 -14.21916 -13.98621 -13.84104 -13.55802 -13.23636 -12.98854 -12.78010 -12.60654 -12.51050 -12.30960 -12.20377 -12.05716 -11.95592 -11.72718 -11.66058 -11.29740 -11.14424 -11.04407 -11.01699 -10.89021 -10.83536 -10.75402 -10.71949 -10.32095 -10.27234 -10.16487 -9.08557 -9.07884 -8.94439 -8.67575 -8.50052 -7.88104 -6.12919 -4.19200 1.13011 1.24067 3.25022 3.32148 3.34270 3.47197 3.51733 4.09455 4.24920 4.33458 4.37970 4.39357 4.60317 4.64677 4.74854 4.80794 4.94223 5.06567 5.07675 5.19607 5.20575 5.22519 5.26616 5.36328 5.40333 5.40734 5.51955 5.52648 5.57384 5.64176 5.68772 5.71152 5.82893 5.84872 5.91032 5.95270 5.95366 6.15006 6.27036 6.31201 6.43060 6.44541 6.79096 6.81282 6.92827 7.12026 7.46471 7.47836 7.58805 7.70030 7.89184 8.10262 8.71966 8.81439 9.18817 9.47639 10.95231 Molecular weight = 333.21amu Principal moments of inertia in cm(-1) A = 0.025406 B = 0.001827 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.817063 B =15319.709807 C =15671.584486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.262 3.738 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.711 5.711 13 C 0.498 3.502 14 O -0.559 6.559 15 C -0.138 4.138 16 C -0.126 4.126 17 C 0.146 3.854 18 H 0.107 0.893 19 O -0.555 6.555 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.073 4.073 24 C -0.031 4.031 25 C -0.139 4.139 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.114 4.114 29 C -0.108 4.108 30 H 0.076 0.924 31 H 0.017 0.983 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.374 0.626 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.056 0.944 51 H 0.120 0.880 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.490 0.820 -27.843 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.160 3.840 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.359 5.359 13 C 0.283 3.717 14 O -0.439 6.439 15 C -0.179 4.179 16 C -0.164 4.164 17 C 0.087 3.913 18 H 0.125 0.875 19 O -0.361 6.361 20 C -0.114 4.114 21 C -0.126 4.126 22 C -0.136 4.136 23 C -0.073 4.073 24 C -0.031 4.031 25 C -0.196 4.196 26 C -0.202 4.202 27 C -0.195 4.195 28 C -0.132 4.132 29 C -0.126 4.126 30 H 0.095 0.905 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.221 0.779 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.222 0.778 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.138 0.862 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.949 1.222 -27.800 28.106 hybrid contribution 0.409 -0.398 1.103 1.242 sum 4.358 0.824 -26.697 27.063 Atomic orbital electron populations 1.22007 0.98856 0.98670 1.00534 1.18724 0.90639 0.94379 0.80270 0.93020 1.21216 1.35315 1.10380 0.90390 0.92058 1.24904 0.95003 0.94725 0.99060 1.69972 1.42152 1.15848 1.23978 0.86473 0.78639 0.79827 0.82396 1.20572 1.19818 1.21128 1.46530 1.65123 1.13544 1.10664 1.20522 0.78595 0.87577 0.84960 1.90648 1.51578 1.16281 1.85361 1.21622 1.03244 0.99233 0.93762 1.21981 1.03518 0.98153 0.92767 1.20922 0.83905 0.95835 0.90634 0.87541 1.86598 1.18133 1.37716 1.93688 1.20564 0.95249 0.98080 0.97503 1.20862 0.98408 0.95627 0.97745 1.21119 0.98226 0.99327 0.94918 1.19790 0.94496 0.96767 0.96257 1.19508 0.96424 0.94138 0.92982 1.21895 0.96673 0.99093 1.01967 1.21966 0.96731 0.99432 1.02024 1.21887 1.02089 0.99674 0.95850 1.20926 0.98435 0.96055 0.97746 1.20950 0.97616 0.99342 0.94677 0.90490 0.96351 0.95361 0.92611 0.77944 0.88887 0.89635 0.90213 0.90749 0.77831 0.86244 0.85660 0.92340 0.92378 0.92397 0.92273 0.92394 0.92151 0.92437 0.92388 0.92508 0.86214 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.32 37.16 0.35 -3.20 16 2 C 0.26 6.76 2.45 -69.08 -0.17 6.59 16 3 H 0.05 1.55 7.57 -51.93 -0.39 1.16 16 4 C -0.53 -14.34 8.69 -34.44 -0.30 -14.64 16 5 H 0.06 1.57 7.73 -52.49 -0.41 1.17 16 6 C 0.07 1.81 5.21 -17.82 -0.09 1.72 16 7 N -0.88 -25.30 11.92 55.43 0.66 -24.64 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.71 -14.93 5.07 -54.93 -0.28 -15.21 16 13 C 0.50 9.88 7.79 -10.98 -0.09 9.80 16 14 O -0.56 -13.40 15.64 5.56 0.09 -13.32 16 15 C -0.14 -1.93 5.60 -27.88 -0.16 -2.09 16 16 C -0.13 -1.63 4.16 -26.73 -0.11 -1.74 16 17 C 0.15 1.55 3.21 -27.88 -0.09 1.46 16 18 H 0.11 1.06 8.05 -51.93 -0.42 0.64 16 19 O -0.56 -5.99 12.67 -35.23 -0.45 -6.44 16 20 C -0.11 -1.20 5.00 -104.63 -0.52 -1.72 16 21 C -0.11 -1.07 9.33 -39.58 -0.37 -1.44 16 22 C -0.12 -1.10 8.98 -39.59 -0.36 -1.45 16 23 C -0.07 -0.66 4.76 -104.63 -0.50 -1.16 16 24 C -0.03 -0.22 0.85 -155.66 -0.13 -0.35 16 25 C -0.14 -0.96 8.29 37.16 0.31 -0.65 16 26 C -0.14 -0.91 7.13 37.16 0.27 -0.65 16 27 C -0.14 -0.87 8.29 37.16 0.31 -0.56 16 28 C -0.11 -1.05 8.71 -39.58 -0.34 -1.40 16 29 C -0.11 -1.07 9.68 -39.59 -0.38 -1.46 16 30 H 0.08 2.07 6.60 -51.93 -0.34 1.73 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.39 7.04 8.53 -40.82 -0.35 6.69 16 35 H 0.09 1.20 7.82 -51.93 -0.41 0.79 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 39 H 0.37 3.04 7.40 45.56 0.34 3.37 16 40 H 0.12 0.97 6.62 -52.48 -0.35 0.62 16 41 H 0.13 0.97 5.90 -52.48 -0.31 0.66 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.39 7.39 -51.93 -0.38 0.01 16 45 H 0.06 0.36 7.51 -51.93 -0.39 -0.03 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 48 H 0.06 0.35 7.39 -51.93 -0.38 -0.03 16 49 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.12 0.91 7.10 -52.49 -0.37 0.54 16 52 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 414.45 15.07 6.25 6.25 Total: -1.00 -32.45 414.45 -9.47 -41.92 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.34 Total: 8.60 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -2.38 Total: -12.92 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.38 Total: -39.85 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.36 Total: -19.76 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.45 -9.47 -41.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253404634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.559 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds