Wall clock time and date at job start Tue Mar 31 2020 05:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48497 * 109.47165 * 264.79730 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21279 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99852 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.46585 * 180.02562 * 15 13 12 17 17 C 1.53007 * 109.46898 * 180.02562 * 16 15 13 18 18 H 1.08995 * 109.47100 * 54.99456 * 17 16 15 19 19 O 1.42901 * 109.46665 * 294.99656 * 17 16 15 20 20 C 1.50701 * 109.47122 * 174.99719 * 17 16 15 21 21 C 1.38237 * 119.99785 * 84.72248 * 20 17 16 22 22 C 1.38236 * 119.99713 * 179.78739 * 21 20 17 23 23 C 1.38228 * 120.00126 * 0.46410 * 22 21 20 24 24 C 1.50696 * 120.00043 * 179.79102 * 23 22 21 25 25 C 1.52998 * 109.47371 * 239.97779 * 24 23 22 26 26 C 1.53001 * 109.47415 * 359.97438 * 24 23 22 27 27 C 1.53004 * 109.47073 * 119.97764 * 24 23 22 28 28 C 1.38231 * 120.00030 * 359.76664 * 23 22 21 29 29 C 1.38224 * 120.00195 * 264.99828 * 20 17 16 30 30 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 31 31 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 32 32 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 33 33 H 0.96997 * 120.00137 * 180.27656 * 7 6 4 34 34 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 35 35 H 1.09000 * 109.46993 * 299.99949 * 15 13 12 36 36 H 1.09000 * 109.46898 * 60.00268 * 15 13 12 37 37 H 1.09000 * 109.47289 * 299.99616 * 16 15 13 38 38 H 1.08992 * 109.47521 * 59.99801 * 16 15 13 39 39 H 0.96704 * 114.00027 * 299.99950 * 19 17 16 40 40 H 1.08006 * 120.00168 * 359.97438 * 21 20 17 41 41 H 1.08003 * 119.99696 * 180.25917 * 22 21 20 42 42 H 1.09001 * 109.47018 * 59.99586 * 25 24 23 43 43 H 1.08997 * 109.47783 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.46858 * 300.00154 * 25 24 23 45 45 H 1.09003 * 109.47064 * 59.99867 * 26 24 23 46 46 H 1.08992 * 109.47399 * 179.97438 * 26 24 23 47 47 H 1.09001 * 109.46647 * 300.00213 * 26 24 23 48 48 H 1.09004 * 109.46903 * 60.00343 * 27 24 23 49 49 H 1.09005 * 109.47172 * 179.97438 * 27 24 23 50 50 H 1.08993 * 109.47096 * 299.99862 * 27 24 23 51 51 H 1.07998 * 120.00196 * 179.97438 * 28 23 22 52 52 H 1.08002 * 119.99826 * 359.97438 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0150 -1.9586 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5877 16 6 2.7012 0.2544 -4.7587 17 6 3.2102 -0.4672 -6.0082 18 1 2.5882 -1.3411 -6.2018 19 8 4.5622 -0.8812 -5.8016 20 6 3.1456 0.4669 -7.1891 21 6 4.1828 1.3483 -7.4306 22 6 4.1256 2.2021 -8.5163 23 6 3.0269 2.1811 -9.3549 24 6 2.9624 3.1151 -10.5357 25 6 1.7367 4.0211 -10.4031 26 6 4.2285 3.9732 -10.5771 27 6 2.8566 2.2995 -11.8259 28 6 1.9876 1.3031 -9.1106 29 6 2.0468 0.4463 -8.0274 30 1 -0.3633 0.4796 0.9088 31 1 -0.3633 0.5473 -0.8698 32 1 -0.3634 -1.0269 -0.0392 33 1 0.9967 1.3391 3.4805 34 1 2.2491 -1.6318 -1.1525 35 1 3.6482 -1.1214 -3.3984 36 1 1.9761 -1.5507 -3.8325 37 1 1.7023 0.6472 -4.9481 38 1 3.3742 1.0759 -4.5136 39 1 5.1735 -0.1533 -5.6235 40 1 5.0392 1.3678 -6.7728 41 1 4.9378 2.8878 -8.7074 42 1 1.8121 4.6021 -9.4839 43 1 1.6902 4.6970 -11.2569 44 1 0.8346 3.4099 -10.3736 45 1 5.1019 3.3278 -10.6716 46 1 4.1821 4.6484 -11.4314 47 1 4.3038 4.5541 -9.6579 48 1 1.9545 1.6884 -11.7964 49 1 2.8095 2.9752 -12.6800 50 1 3.7298 1.6542 -11.9204 51 1 1.1290 1.2870 -9.7656 52 1 1.2346 -0.2395 -7.8363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253404634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:22 Heat of formation + Delta-G solvation = -118.308789 kcal Electronic energy + Delta-G solvation = -28050.060358 eV Core-core repulsion = 24205.161287 eV Total energy + Delta-G solvation = -3844.899072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.209 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10612 -40.51985 -38.86748 -36.78623 -36.58765 -34.31856 -33.81151 -32.01667 -31.55208 -30.64211 -28.25172 -28.10238 -27.41630 -27.22021 -24.34070 -23.29988 -22.73974 -22.06348 -21.05860 -20.06040 -18.92604 -18.32071 -17.55617 -17.19133 -17.01130 -16.54085 -16.22169 -16.03448 -15.74805 -15.25534 -15.21687 -15.12743 -14.57188 -14.44455 -14.38916 -14.19506 -13.95195 -13.92423 -13.61074 -13.40875 -13.30762 -12.95738 -12.92943 -12.79006 -12.75765 -12.65234 -12.54543 -12.35142 -12.31595 -12.13540 -11.95451 -11.94972 -11.78349 -11.60764 -11.35997 -11.14859 -11.04094 -10.64839 -10.55271 -9.79707 -9.73024 -9.41819 -8.20538 -6.35202 0.40285 0.52270 1.44346 1.44854 1.56022 1.87891 2.36182 2.64308 2.84545 3.11328 3.53885 3.60280 3.76287 3.80874 3.88109 4.03459 4.11858 4.14437 4.20557 4.31994 4.39214 4.46065 4.51766 4.59637 4.70235 4.71397 4.77943 4.78065 4.82682 4.88989 4.89438 5.00269 5.02666 5.03469 5.04761 5.10381 5.15013 5.19691 5.24516 5.25681 5.37238 5.43122 5.43430 5.58825 5.61809 5.64417 5.68294 5.75998 5.91040 6.04976 6.11937 6.73931 6.75036 7.00594 7.32358 7.60927 8.88321 Molecular weight = 333.21amu Principal moments of inertia in cm(-1) A = 0.025406 B = 0.001827 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.817063 B =15319.709807 C =15671.584486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.267 3.733 3 H -0.002 1.002 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.272 1.272 10 H -0.261 1.261 11 H -0.287 1.287 12 N -0.708 5.708 13 C 0.493 3.507 14 O -0.606 6.606 15 C -0.123 4.123 16 C -0.119 4.119 17 C 0.160 3.840 18 H 0.119 0.881 19 O -0.563 6.563 20 C -0.130 4.130 21 C -0.121 4.121 22 C -0.130 4.130 23 C -0.077 4.077 24 C -0.032 4.032 25 C -0.138 4.138 26 C -0.144 4.144 27 C -0.135 4.135 28 C -0.123 4.123 29 C -0.119 4.119 30 H 0.052 0.948 31 H 0.014 0.986 32 H 0.046 0.954 33 H 0.265 0.735 34 H 0.406 0.594 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.384 0.616 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.069 0.931 50 H 0.052 0.948 51 H 0.134 0.866 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -1.061 -29.022 29.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.163 3.837 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.198 1.198 10 H -0.185 1.185 11 H -0.213 1.213 12 N -0.357 5.357 13 C 0.281 3.719 14 O -0.489 6.489 15 C -0.162 4.162 16 C -0.157 4.157 17 C 0.101 3.899 18 H 0.136 0.864 19 O -0.370 6.370 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.077 4.077 24 C -0.032 4.032 25 C -0.195 4.195 26 C -0.201 4.201 27 C -0.192 4.192 28 C -0.141 4.141 29 C -0.137 4.137 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.234 0.766 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.088 0.912 50 H 0.071 0.929 51 H 0.151 0.849 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.651 -0.696 -29.007 29.386 hybrid contribution 0.207 0.270 1.409 1.449 sum 4.858 -0.427 -27.598 28.026 Atomic orbital electron populations 1.21827 0.98441 0.99372 0.99083 1.18327 0.90952 0.92108 0.82318 0.98443 1.21552 1.35386 1.10712 0.90848 0.90773 1.25843 0.94842 0.95557 1.02476 1.70124 1.43336 1.17598 1.24749 0.85333 0.78778 0.78250 0.77974 1.19760 1.18522 1.21331 1.46318 1.65251 1.14283 1.09839 1.21570 0.77225 0.87143 0.85977 1.90630 1.53395 1.18683 1.86143 1.21604 1.04521 0.99443 0.90653 1.21910 1.02455 0.97741 0.93626 1.20753 0.83961 0.95869 0.89275 0.86383 1.86570 1.18282 1.38547 1.93642 1.20636 0.95874 0.98681 0.97878 1.21118 0.98858 0.95656 0.98226 1.21363 0.98883 0.99556 0.94933 1.20082 0.94209 0.96752 0.96659 1.19564 0.96887 0.94040 0.92664 1.21889 0.96572 0.99139 1.01932 1.21958 0.96386 0.99458 1.02258 1.21866 1.01921 0.99732 0.95722 1.21158 0.99046 0.95983 0.97884 1.21199 0.97859 0.99796 0.94853 0.92930 0.96678 0.93448 0.92585 0.75934 0.86940 0.86605 0.91729 0.92330 0.76625 0.85069 0.84467 0.93512 0.91101 0.92397 0.92128 0.91317 0.92652 0.92364 0.91198 0.92930 0.84866 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.53 9.32 71.98 0.67 -5.85 16 2 C 0.27 14.05 2.45 44.25 0.11 14.16 16 3 H 0.00 -0.15 7.57 -2.39 -0.02 -0.17 16 4 C -0.55 -29.25 8.69 25.60 0.22 -29.03 16 5 H 0.07 3.69 7.73 -2.91 -0.02 3.67 16 6 C 0.01 0.70 5.21 84.65 0.44 1.14 16 7 N -0.92 -53.92 11.92 21.45 0.26 -53.67 16 8 Si 0.97 42.29 29.54 68.60 2.03 44.32 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 10 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 12 N -0.71 -29.45 5.07 -446.09 -2.26 -31.71 16 13 C 0.49 19.47 7.79 87.66 0.68 20.16 16 14 O -0.61 -29.96 15.64 -3.03 -0.05 -30.01 16 15 C -0.12 -3.19 5.60 29.85 0.17 -3.02 16 16 C -0.12 -2.98 4.16 30.60 0.13 -2.85 16 17 C 0.16 3.15 3.21 29.85 0.10 3.25 16 18 H 0.12 2.05 8.05 -2.39 -0.02 2.03 16 19 O -0.56 -11.01 12.67 -148.98 -1.89 -12.90 16 20 C -0.13 -2.63 5.00 -19.87 -0.10 -2.73 16 21 C -0.12 -2.31 9.33 22.27 0.21 -2.10 16 22 C -0.13 -2.33 8.98 22.27 0.20 -2.13 16 23 C -0.08 -1.32 4.76 -19.87 -0.09 -1.42 16 24 C -0.03 -0.41 0.85 -52.93 -0.05 -0.46 16 25 C -0.14 -1.76 8.29 71.98 0.60 -1.16 16 26 C -0.14 -1.64 7.13 71.98 0.51 -1.13 16 27 C -0.14 -1.50 8.29 71.98 0.60 -0.90 16 28 C -0.12 -2.16 8.71 22.27 0.19 -1.97 16 29 C -0.12 -2.26 9.68 22.27 0.22 -2.05 16 30 H 0.05 2.91 6.60 -2.39 -0.02 2.89 16 31 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16 33 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.41 13.99 8.53 -92.70 -0.79 13.20 16 35 H 0.11 2.58 7.82 -2.39 -0.02 2.56 16 36 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.06 1.82 8.10 -2.39 -0.02 1.80 16 38 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 39 H 0.38 5.64 7.40 -74.05 -0.55 5.09 16 40 H 0.13 2.04 6.62 -2.91 -0.02 2.02 16 41 H 0.14 2.02 5.90 -2.91 -0.02 2.00 16 42 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.72 7.39 -2.39 -0.02 0.71 16 45 H 0.06 0.67 7.51 -2.39 -0.02 0.65 16 46 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.05 0.68 7.51 -2.39 -0.02 0.66 16 48 H 0.06 0.63 7.39 -2.38 -0.02 0.61 16 49 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 50 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.13 1.88 7.10 -2.91 -0.02 1.86 16 52 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -71.56 414.45 2.46 -69.10 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.43 Total: 32.97 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 4.80 Total: -18.10 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -2.01 Total: -85.38 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -1.94 Total: -42.91 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -71.56 2.46 -69.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253404634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.210 kcal (2) G-P(sol) polarization free energy of solvation -71.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds