Wall clock time and date at job start Tue Mar 31 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30064 * 126.15708 * 2 1 4 4 N 1.39765 * 110.33129 * 179.97438 * 3 2 1 5 5 C 1.46498 * 125.34972 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47012 * 90.02272 * 5 4 3 7 7 H 1.07996 * 119.99928 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99779 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99588 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00425 * 0.02562 * 8 6 5 11 11 H 1.48510 * 109.47100 * 89.99275 * 10 8 6 12 12 H 1.48492 * 109.47137 * 209.99436 * 10 8 6 13 13 H 1.48500 * 109.46863 * 329.99940 * 10 8 6 14 14 C 1.37188 * 109.29525 * 0.02562 * 4 3 2 15 15 N 1.32071 * 132.88467 * 180.02562 * 14 4 3 16 16 C 1.33400 * 121.71024 * 179.97438 * 15 14 4 17 17 C 1.40863 * 120.55988 * 180.02562 * 16 15 14 18 18 C 1.35936 * 119.84919 * 179.97438 * 17 16 15 19 19 C 1.39597 * 121.13956 * 0.04261 * 18 17 16 20 20 Cl 1.73598 * 119.58107 * 179.97438 * 19 18 17 21 21 C 1.36105 * 120.83323 * 359.97438 * 19 18 17 22 22 C 1.40685 * 119.62559 * 359.97438 * 21 19 18 23 23 C 1.40374 * 121.04085 * 180.02562 * 22 21 19 24 24 Cl 1.73600 * 121.08840 * 0.02562 * 23 22 21 25 25 C 1.39148 * 117.82357 * 179.97438 * 23 22 21 26 26 H 1.08993 * 109.47501 * 90.01989 * 1 2 3 27 27 H 1.09003 * 109.47379 * 210.02424 * 1 2 3 28 28 H 1.09008 * 109.47241 * 330.02136 * 1 2 3 29 29 H 1.08995 * 109.47433 * 210.02367 * 5 4 3 30 30 H 1.09000 * 109.47212 * 330.02954 * 5 4 3 31 31 H 0.97006 * 119.99781 * 180.02562 * 9 8 6 32 32 H 1.07997 * 120.08060 * 359.95827 * 17 16 15 33 33 H 1.07999 * 119.42604 * 180.02562 * 18 17 16 34 34 H 1.07995 * 120.18887 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0501 0.0000 4 7 3.6190 0.6690 0.0006 5 6 4.7603 1.5874 0.0002 6 6 5.1517 1.9029 1.4210 7 1 4.6052 1.4629 2.2420 8 6 6.2081 2.7524 1.6725 9 7 6.5499 3.0273 2.9124 10 14 7.1538 3.5129 0.2525 11 1 6.5269 4.8055 -0.1239 12 1 8.5613 3.7467 0.6640 13 1 7.1248 2.5913 -0.9115 14 6 3.7020 -0.7004 0.0004 15 7 4.7224 -1.5389 0.0012 16 6 4.5435 -2.8609 0.0013 17 6 5.6495 -3.7333 0.0027 18 6 5.4506 -5.0780 0.0033 19 6 4.1630 -5.6172 0.0016 20 17 3.9557 -7.3408 0.0018 21 6 3.0681 -4.8087 -0.0001 22 6 3.2351 -3.4118 0.0003 23 6 2.1268 -2.5503 -0.0009 24 17 0.5066 -3.1740 -0.0022 25 6 2.3692 -1.1802 0.0002 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5135 29 1 5.6013 1.1217 -0.5134 30 1 4.4854 2.5084 -0.5139 31 1 7.2929 3.6253 3.0894 32 1 6.6533 -3.3347 0.0030 33 1 6.3034 -5.7405 0.0047 34 1 2.0767 -5.2371 -0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255189135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:32 Heat of formation + Delta-G solvation = 106.877368 kcal Electronic energy + Delta-G solvation = -23096.291888 eV Core-core repulsion = 19468.391750 eV Total energy + Delta-G solvation = -3627.900138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 335.029 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.52152 -39.58272 -37.17868 -36.93316 -35.55929 -34.35262 -32.98618 -32.30015 -29.91368 -29.66977 -29.47985 -26.60200 -24.57976 -23.46081 -22.38311 -21.77112 -19.57748 -18.86350 -17.82657 -17.18009 -16.61540 -15.85745 -15.43485 -15.08214 -14.86907 -14.48551 -14.23238 -13.95396 -13.76236 -13.32259 -13.07042 -12.82351 -12.70989 -12.52638 -12.44852 -12.16164 -12.13548 -12.00585 -11.21260 -11.17313 -11.10196 -10.77642 -10.75532 -10.55814 -10.42145 -10.07283 -9.72738 -9.37696 -8.91781 -8.78337 -8.59395 -7.44132 -6.26761 -4.29875 -0.08489 0.76677 1.57543 1.64304 1.95127 2.54296 2.65493 2.74876 3.16258 3.22964 3.24678 3.97522 4.15261 4.21609 4.26729 4.37575 4.61382 4.73222 4.87084 4.99084 5.04410 5.16095 5.35282 5.49809 5.58848 5.64942 5.75159 5.76552 5.91543 6.05892 6.15079 6.30341 6.41802 6.50821 6.71397 7.20930 7.27324 7.78391 8.12412 8.27835 8.74665 9.27735 10.85888 Molecular weight = 335.03amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.004008 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.566721 B = 6984.455489 C = 8807.288895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.085 3.915 3 N -0.203 5.203 4 N -0.357 5.357 5 C 0.240 3.760 6 C -0.541 4.541 7 H 0.078 0.922 8 C 0.081 3.919 9 N -0.886 5.886 10 Si 0.873 3.127 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.263 1.263 14 C 0.370 3.630 15 N -0.484 5.484 16 C 0.210 3.790 17 C -0.084 4.084 18 C -0.083 4.083 19 C -0.051 4.051 20 Cl -0.073 7.073 21 C -0.064 4.064 22 C -0.137 4.137 23 C 0.100 3.900 24 Cl -0.037 7.037 25 C -0.201 4.201 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.269 0.731 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.158 -16.708 -8.107 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 N -0.016 5.016 4 N -0.146 5.146 5 C 0.122 3.878 6 C -0.579 4.579 7 H 0.096 0.904 8 C -0.123 4.123 9 N -0.523 5.523 10 Si 0.699 3.301 11 H -0.196 1.196 12 H -0.204 1.204 13 H -0.188 1.188 14 C 0.120 3.880 15 N -0.201 5.201 16 C 0.074 3.926 17 C -0.104 4.104 18 C -0.104 4.104 19 C -0.078 4.078 20 Cl -0.044 7.044 21 C -0.083 4.083 22 C -0.142 4.142 23 C 0.061 3.939 24 Cl -0.008 7.008 25 C -0.211 4.211 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.124 -14.962 -7.987 18.806 hybrid contribution -0.246 -0.770 -0.417 0.910 sum -8.370 -15.733 -8.404 19.703 Atomic orbital electron populations 1.20333 0.85340 1.04119 1.03450 1.23432 0.96807 0.87435 1.01804 1.76562 0.87761 1.23016 1.14273 1.48921 1.04099 1.01176 1.60437 1.20098 0.79843 0.87847 0.99980 1.21125 1.16824 1.29776 0.90199 0.90373 1.24764 0.96242 0.95491 0.95849 1.69872 1.28296 1.35486 1.18666 0.86892 0.80046 0.80370 0.82754 1.19600 1.20423 1.18780 1.18982 0.88008 0.87230 0.93780 1.66950 1.32241 1.01393 1.19480 1.18643 0.90991 0.88581 0.94355 1.20751 0.98567 0.91176 0.99886 1.20727 0.95610 0.95169 0.98933 1.20404 0.94739 0.84600 1.08025 1.98362 1.97675 1.11290 1.97075 1.20777 0.98872 0.90908 0.97784 1.18148 0.92496 0.93378 1.10212 1.20684 0.85929 0.90713 0.96562 1.98364 1.19647 1.86840 1.95951 1.20378 0.95420 0.92717 1.12592 0.89972 0.90023 0.89905 0.92580 0.93397 0.92097 0.83193 0.84158 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.01 36.00 0.36 -0.49 16 2 C 0.09 1.44 7.44 -80.17 -0.60 0.84 16 3 N -0.20 -4.16 12.37 34.86 0.43 -3.73 16 4 N -0.36 -8.08 3.63 -61.46 -0.22 -8.31 16 5 C 0.24 5.84 5.23 -5.19 -0.03 5.81 16 6 C -0.54 -15.33 9.94 -34.44 -0.34 -15.67 16 7 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 8 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 9 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 10 Si 0.87 20.41 27.47 -169.99 -4.67 15.74 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 13 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 14 C 0.37 7.75 7.95 -156.07 -1.24 6.51 16 15 N -0.48 -9.79 10.33 -10.04 -0.10 -9.89 16 16 C 0.21 3.47 6.61 -84.76 -0.56 2.91 16 17 C -0.08 -1.12 9.97 -39.41 -0.39 -1.51 16 18 C -0.08 -0.91 9.71 -39.90 -0.39 -1.29 16 19 C -0.05 -0.57 6.28 -39.84 -0.25 -0.82 16 20 Cl -0.07 -0.72 28.92 -51.86 -1.50 -2.21 16 21 C -0.06 -0.77 9.20 -39.42 -0.36 -1.13 16 22 C -0.14 -2.02 5.75 -106.74 -0.61 -2.63 16 23 C 0.10 1.48 6.43 -38.44 -0.25 1.24 16 24 Cl -0.04 -0.42 25.41 -51.86 -1.32 -1.74 16 25 C -0.20 -3.54 6.21 -105.08 -0.65 -4.20 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.84 6.31 -51.93 -0.33 0.51 16 28 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 29 H 0.06 1.35 7.20 -51.93 -0.37 0.98 16 30 H 0.05 1.12 7.57 -51.93 -0.39 0.72 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.14 1.46 7.03 -52.49 -0.37 1.09 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -31.25 325.91 -9.85 -41.11 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -2.74 Total: -1.85 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -5.41 Total: -8.26 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.88 Total: -47.69 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -2.82 Total: -3.95 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.25 -9.85 -41.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255189135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.983 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds