Wall clock time and date at job start Tue Mar 31 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30064 * 126.15708 * 2 1 4 4 N 1.39765 * 110.33129 * 179.97438 * 3 2 1 5 5 C 1.46498 * 125.34972 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47012 * 90.02272 * 5 4 3 7 7 H 1.07996 * 119.99928 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99779 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99588 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00425 * 0.02562 * 8 6 5 11 11 H 1.48510 * 109.47100 * 89.99275 * 10 8 6 12 12 H 1.48492 * 109.47137 * 209.99436 * 10 8 6 13 13 H 1.48500 * 109.46863 * 329.99940 * 10 8 6 14 14 C 1.37188 * 109.29525 * 0.02562 * 4 3 2 15 15 N 1.32071 * 132.88467 * 180.02562 * 14 4 3 16 16 C 1.33400 * 121.71024 * 179.97438 * 15 14 4 17 17 C 1.40863 * 120.55988 * 180.02562 * 16 15 14 18 18 C 1.35936 * 119.84919 * 179.97438 * 17 16 15 19 19 C 1.39597 * 121.13956 * 0.04261 * 18 17 16 20 20 Cl 1.73598 * 119.58107 * 179.97438 * 19 18 17 21 21 C 1.36105 * 120.83323 * 359.97438 * 19 18 17 22 22 C 1.40685 * 119.62559 * 359.97438 * 21 19 18 23 23 C 1.40374 * 121.04085 * 180.02562 * 22 21 19 24 24 Cl 1.73600 * 121.08840 * 0.02562 * 23 22 21 25 25 C 1.39148 * 117.82357 * 179.97438 * 23 22 21 26 26 H 1.08993 * 109.47501 * 90.01989 * 1 2 3 27 27 H 1.09003 * 109.47379 * 210.02424 * 1 2 3 28 28 H 1.09008 * 109.47241 * 330.02136 * 1 2 3 29 29 H 1.08995 * 109.47433 * 210.02367 * 5 4 3 30 30 H 1.09000 * 109.47212 * 330.02954 * 5 4 3 31 31 H 0.97006 * 119.99781 * 180.02562 * 9 8 6 32 32 H 1.07997 * 120.08060 * 359.95827 * 17 16 15 33 33 H 1.07999 * 119.42604 * 180.02562 * 18 17 16 34 34 H 1.07995 * 120.18887 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0501 0.0000 4 7 3.6190 0.6690 0.0006 5 6 4.7603 1.5874 0.0002 6 6 5.1517 1.9029 1.4210 7 1 4.6052 1.4629 2.2420 8 6 6.2081 2.7524 1.6725 9 7 6.5499 3.0273 2.9124 10 14 7.1538 3.5129 0.2525 11 1 6.5269 4.8055 -0.1239 12 1 8.5613 3.7467 0.6640 13 1 7.1248 2.5913 -0.9115 14 6 3.7020 -0.7004 0.0004 15 7 4.7224 -1.5389 0.0012 16 6 4.5435 -2.8609 0.0013 17 6 5.6495 -3.7333 0.0027 18 6 5.4506 -5.0780 0.0033 19 6 4.1630 -5.6172 0.0016 20 17 3.9557 -7.3408 0.0018 21 6 3.0681 -4.8087 -0.0001 22 6 3.2351 -3.4118 0.0003 23 6 2.1268 -2.5503 -0.0009 24 17 0.5066 -3.1740 -0.0022 25 6 2.3692 -1.1802 0.0002 26 1 -0.3634 -0.0004 -1.0276 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5135 29 1 5.6013 1.1217 -0.5134 30 1 4.4854 2.5084 -0.5139 31 1 7.2929 3.6253 3.0894 32 1 6.6533 -3.3347 0.0030 33 1 6.3034 -5.7405 0.0047 34 1 2.0767 -5.2371 -0.0009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255189135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:31 Heat of formation + Delta-G solvation = 88.555844 kcal Electronic energy + Delta-G solvation = -23097.086369 eV Core-core repulsion = 19468.391750 eV Total energy + Delta-G solvation = -3628.694619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 335.029 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.82330 -40.78019 -38.24097 -37.96306 -36.65337 -36.01439 -34.58182 -33.77990 -31.33943 -30.99134 -30.63893 -28.14977 -25.87975 -24.86602 -23.69453 -23.20357 -20.90096 -20.07151 -19.29829 -19.06233 -17.92767 -17.04621 -16.88952 -16.48604 -15.99852 -15.90155 -15.60261 -15.11510 -14.97137 -14.73746 -14.42097 -14.15632 -13.97836 -13.81768 -13.65732 -13.47812 -13.36611 -13.03838 -12.89758 -12.64091 -12.32960 -12.10963 -11.97280 -11.87389 -11.85296 -11.75360 -11.25130 -10.93173 -10.68768 -10.22984 -9.81814 -8.76204 -8.44378 -6.54789 -1.23568 -0.43213 0.46395 0.48530 1.00070 1.13431 1.29692 1.31794 1.35613 1.43873 1.59573 2.23155 2.75998 2.85702 2.93020 3.03682 3.17702 3.53029 3.55978 3.77198 3.89764 4.02795 4.26031 4.36115 4.48618 4.51413 4.67504 4.73568 4.75440 4.83355 4.98848 5.04970 5.10715 5.18295 5.34026 5.44294 5.66998 6.11307 6.39644 6.44497 6.80242 7.08309 8.72632 Molecular weight = 335.03amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.004008 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.566721 B = 6984.455489 C = 8807.288895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.108 3.892 3 N -0.251 5.251 4 N -0.391 5.391 5 C 0.255 3.745 6 C -0.550 4.550 7 H 0.020 0.980 8 C 0.022 3.978 9 N -0.937 5.937 10 Si 0.951 3.049 11 H -0.256 1.256 12 H -0.271 1.271 13 H -0.246 1.246 14 C 0.341 3.659 15 N -0.529 5.529 16 C 0.192 3.808 17 C -0.105 4.105 18 C -0.056 4.056 19 C -0.046 4.046 20 Cl -0.049 7.049 21 C -0.061 4.061 22 C -0.144 4.144 23 C 0.114 3.886 24 Cl 0.005 6.995 25 C -0.224 4.224 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.274 0.726 32 H 0.155 0.845 33 H 0.175 0.825 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 -19.570 -9.951 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 N -0.063 5.063 4 N -0.181 5.181 5 C 0.136 3.864 6 C -0.588 4.588 7 H 0.039 0.961 8 C -0.177 4.177 9 N -0.575 5.575 10 Si 0.772 3.228 11 H -0.180 1.180 12 H -0.196 1.196 13 H -0.169 1.169 14 C 0.093 3.907 15 N -0.246 5.246 16 C 0.059 3.941 17 C -0.124 4.124 18 C -0.077 4.077 19 C -0.073 4.073 20 Cl -0.020 7.020 21 C -0.080 4.080 22 C -0.149 4.149 23 C 0.075 3.925 24 Cl 0.035 6.965 25 C -0.234 4.234 26 H 0.129 0.871 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.172 0.828 33 H 0.193 0.807 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.207 -17.878 -9.835 22.386 hybrid contribution -0.067 -0.310 0.244 0.400 sum -9.273 -18.188 -9.591 22.556 Atomic orbital electron populations 1.20614 0.81499 1.05374 1.05636 1.24318 0.98660 0.86379 0.97878 1.76485 0.87200 1.24721 1.17940 1.48621 1.04420 1.01714 1.63319 1.19639 0.81128 0.88722 0.96949 1.21242 1.16736 1.29763 0.91062 0.96139 1.25811 0.97089 0.95701 0.99145 1.70031 1.29345 1.36666 1.21472 0.85672 0.78244 0.79869 0.78988 1.18032 1.19614 1.16902 1.19304 0.89872 0.86855 0.94679 1.66894 1.33117 1.03015 1.21614 1.19166 0.92964 0.87812 0.94185 1.20895 0.98085 0.91869 1.01568 1.21087 0.96771 0.94442 0.95396 1.20562 0.94596 0.85834 1.06352 1.98383 1.97617 1.09167 1.96843 1.20938 1.00295 0.89527 0.97255 1.18328 0.91798 0.94680 1.10095 1.20781 0.87987 0.89769 0.93954 1.98375 1.16548 1.86119 1.95495 1.20462 0.94255 0.94063 1.14647 0.87076 0.88353 0.88969 0.92729 0.92627 0.91664 0.82769 0.80746 0.82010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.01 71.23 0.71 -0.84 16 2 C 0.11 3.70 7.44 44.88 0.33 4.03 16 3 N -0.25 -10.81 12.37 -43.62 -0.54 -11.35 16 4 N -0.39 -18.85 3.63 -348.35 -1.26 -20.11 16 5 C 0.26 13.10 5.23 85.64 0.45 13.55 16 6 C -0.55 -33.35 9.94 25.60 0.25 -33.10 16 7 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16 8 C 0.02 1.31 5.47 84.65 0.46 1.77 16 9 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 10 Si 0.95 43.15 27.47 68.60 1.88 45.03 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.25 -10.35 6.54 99.48 0.65 -9.70 16 14 C 0.34 15.15 7.95 134.40 1.07 16.21 16 15 N -0.53 -22.56 10.33 -185.68 -1.92 -24.48 16 16 C 0.19 6.45 6.61 40.47 0.27 6.71 16 17 C -0.10 -2.71 9.97 22.38 0.22 -2.49 16 18 C -0.06 -1.06 9.71 22.06 0.21 -0.85 16 19 C -0.05 -0.88 6.28 22.10 0.14 -0.75 16 20 Cl -0.05 -0.77 28.92 -2.72 -0.08 -0.85 16 21 C -0.06 -1.29 9.20 22.37 0.21 -1.08 16 22 C -0.14 -4.09 5.75 -21.24 -0.12 -4.21 16 23 C 0.11 3.27 6.43 23.01 0.15 3.42 16 24 Cl 0.00 0.09 25.41 -2.72 -0.07 0.02 16 25 C -0.22 -8.07 6.21 -20.16 -0.13 -8.20 16 26 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.10 1.75 6.31 -2.39 -0.02 1.73 16 28 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.05 2.75 7.20 -2.39 -0.02 2.74 16 30 H 0.06 2.70 7.57 -2.39 -0.02 2.68 16 31 H 0.27 15.80 8.31 -92.70 -0.77 15.03 16 32 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 34 H 0.16 2.72 7.03 -2.91 -0.02 2.70 16 Total: -1.00 -75.17 325.91 3.66 -71.51 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.11 Total: 4.59 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 4.23 Total: -5.81 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -3.42 Total: -114.50 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.15 Total: -0.83 kcal Total: -75.17 3.66 -71.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255189135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.065 kcal (2) G-P(sol) polarization free energy of solvation -75.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds