Wall clock time and date at job start Tue Mar 31 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30067 * 126.14793 * 2 1 4 4 N 1.39765 * 110.33409 * 180.02562 * 3 2 1 5 5 C 1.46491 * 125.36018 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02465 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48501 * 109.47188 * 90.00793 * 10 8 6 12 12 H 1.48501 * 109.47085 * 210.00372 * 10 8 6 13 13 H 1.48498 * 109.47634 * 330.00608 * 10 8 6 14 14 C 1.37197 * 109.28595 * 0.24833 * 4 3 2 15 15 N 1.32059 * 132.87030 * 180.40117 * 14 4 3 16 16 C 1.33384 * 121.70003 * 179.58289 * 15 14 4 17 17 C 1.40977 * 120.54644 * 179.75962 * 16 15 14 18 18 Cl 1.73592 * 120.09974 * 0.02562 * 17 16 15 19 19 C 1.36050 * 119.80023 * 180.02562 * 17 16 15 20 20 C 1.39474 * 121.13231 * 359.97438 * 19 17 16 21 21 C 1.36011 * 120.88319 * 0.02843 * 20 19 17 22 22 C 1.40697 * 119.66358 * 359.95648 * 21 20 19 23 23 C 1.40376 * 121.07529 * 180.02562 * 22 21 20 24 24 Cl 1.73596 * 121.08471 * 0.03909 * 23 22 21 25 25 C 1.39156 * 117.82537 * 180.02562 * 23 22 21 26 26 H 1.09005 * 109.47221 * 89.97532 * 1 2 3 27 27 H 1.09004 * 109.46764 * 209.96835 * 1 2 3 28 28 H 1.08995 * 109.47659 * 329.96596 * 1 2 3 29 29 H 1.09004 * 109.47166 * 330.02731 * 5 4 3 30 30 H 1.08994 * 109.47507 * 210.02437 * 5 4 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 32 32 H 1.07999 * 119.42954 * 179.97438 * 19 17 16 33 33 H 1.07999 * 119.55763 * 180.02562 * 20 19 17 34 34 H 1.08009 * 120.16453 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0503 0.0000 4 7 3.6190 0.6694 -0.0006 5 6 4.7602 1.5878 -0.0013 6 6 5.1526 1.9025 1.4193 7 1 4.6067 1.4621 2.2406 8 6 6.2125 2.7479 1.6706 9 7 6.8775 3.2839 0.6706 10 14 6.7037 3.1318 3.4315 11 1 7.7077 2.1397 3.8929 12 1 7.2891 4.4951 3.4960 13 1 5.5049 3.0660 4.3055 14 6 3.7021 -0.7000 -0.0066 15 7 4.7225 -1.5382 -0.0027 16 6 4.5438 -2.8601 -0.0022 17 6 5.6510 -3.7328 -0.0031 18 17 7.2644 -3.0922 -0.0042 19 6 5.4512 -5.0785 -0.0032 20 6 4.1643 -5.6164 -0.0019 21 6 3.0700 -4.8087 -0.0010 22 6 3.2358 -3.4116 -0.0006 23 6 2.1272 -2.5504 0.0008 24 17 0.5074 -3.1746 0.0031 25 6 2.3693 -1.1800 0.0006 26 1 -0.3634 0.0004 -1.0277 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3634 0.8896 0.5143 29 1 4.4849 2.5091 -0.5147 30 1 5.6009 1.1225 -0.5158 31 1 7.6229 3.8790 0.8474 32 1 6.3036 -5.7416 -0.0043 33 1 4.0351 -6.6887 -0.0015 34 1 2.0788 -5.2378 0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255189323.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:35 Heat of formation + Delta-G solvation = 103.334024 kcal Electronic energy + Delta-G solvation = -23341.698594 eV Core-core repulsion = 19713.644806 eV Total energy + Delta-G solvation = -3628.053789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 335.029 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.42165 -39.47506 -37.09400 -36.33859 -35.86659 -34.22600 -32.80266 -32.10736 -29.90320 -29.45883 -29.15262 -26.28917 -24.49103 -23.55794 -22.34875 -21.83672 -19.47853 -18.77092 -17.73699 -16.79532 -16.45030 -15.69051 -15.30146 -15.02614 -14.65020 -14.56793 -14.36020 -13.92278 -13.76318 -13.13062 -13.05772 -12.71923 -12.62582 -12.23218 -12.16373 -11.93354 -11.70221 -11.49003 -11.18801 -11.14417 -10.99133 -10.80405 -10.61191 -10.47307 -10.28025 -10.09982 -9.63234 -9.26887 -8.81900 -8.59983 -8.48457 -7.35221 -6.21459 -4.28410 -0.01933 0.90031 1.59087 1.66925 2.34575 2.68332 2.76361 2.89766 3.24756 3.30307 3.35029 4.02914 4.18608 4.32914 4.36268 4.45149 4.68362 4.82258 5.01372 5.09578 5.14163 5.17945 5.32950 5.60451 5.61499 5.63679 5.75284 5.86259 6.01919 6.12953 6.22618 6.43051 6.62739 6.99539 7.04544 7.38729 7.73028 7.89738 7.93422 8.26969 8.73547 9.36644 10.86181 Molecular weight = 335.03amu Principal moments of inertia in cm(-1) A = 0.010026 B = 0.005245 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.079392 B = 5337.327642 C = 7551.766469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.078 3.922 3 N -0.203 5.203 4 N -0.356 5.356 5 C 0.267 3.733 6 C -0.534 4.534 7 H 0.061 0.939 8 C 0.068 3.932 9 N -0.890 5.890 10 Si 0.905 3.095 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.365 3.635 15 N -0.473 5.473 16 C 0.209 3.791 17 C -0.025 4.025 18 Cl -0.039 7.039 19 C -0.079 4.079 20 C -0.131 4.131 21 C -0.071 4.071 22 C -0.136 4.136 23 C 0.095 3.905 24 Cl -0.040 7.040 25 C -0.200 4.200 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.268 0.732 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.962 -17.575 -2.920 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.101 4.101 3 N -0.017 5.017 4 N -0.145 5.145 5 C 0.151 3.849 6 C -0.573 4.573 7 H 0.079 0.921 8 C -0.135 4.135 9 N -0.528 5.528 10 Si 0.732 3.268 11 H -0.203 1.203 12 H -0.208 1.208 13 H -0.198 1.198 14 C 0.116 3.884 15 N -0.188 5.188 16 C 0.073 3.927 17 C -0.053 4.053 18 Cl -0.010 7.010 19 C -0.101 4.101 20 C -0.150 4.150 21 C -0.091 4.091 22 C -0.141 4.141 23 C 0.057 3.943 24 Cl -0.010 7.010 25 C -0.211 4.211 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.738 -15.575 -2.969 18.104 hybrid contribution -0.264 -0.768 0.979 1.272 sum -9.002 -16.343 -1.990 18.764 Atomic orbital electron populations 1.20305 0.85528 1.03906 1.03355 1.23396 0.96733 0.87516 1.02504 1.76555 0.88163 1.23091 1.13899 1.49453 1.04304 1.01347 1.59439 1.19804 0.78503 0.87379 0.99203 1.21249 1.15792 1.29092 0.91152 0.92076 1.24877 0.95464 0.95139 0.98050 1.69917 1.20844 1.31103 1.30940 0.86377 0.78887 0.77737 0.83817 1.20255 1.20807 1.19755 1.19019 0.87766 0.87516 0.94148 1.66969 1.32135 1.00992 1.18728 1.18164 0.90047 0.88650 0.95863 1.20403 0.86118 0.92352 1.06460 1.98398 1.18808 1.87307 1.96444 1.20812 0.98486 0.92673 0.98109 1.20653 0.91235 1.00224 1.02906 1.20994 0.99891 0.90961 0.97206 1.18177 0.91518 0.94439 1.09972 1.20652 0.85820 0.90706 0.97161 1.98354 1.19749 1.86879 1.96045 1.20446 0.95509 0.92767 1.12379 0.90091 0.90161 0.90069 0.92765 0.92132 0.92268 0.84340 0.84736 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.01 36.01 0.36 -0.51 16 2 C 0.08 1.36 7.44 -80.17 -0.60 0.77 16 3 N -0.20 -4.32 12.37 34.86 0.43 -3.89 16 4 N -0.36 -8.43 3.63 -61.46 -0.22 -8.65 16 5 C 0.27 7.09 6.16 -5.20 -0.03 7.06 16 6 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 7 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 8 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 9 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 10 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 14 C 0.37 8.00 7.95 -156.07 -1.24 6.76 16 15 N -0.47 -10.18 9.79 -10.02 -0.10 -10.27 16 16 C 0.21 3.74 6.61 -84.73 -0.56 3.18 16 17 C -0.02 -0.38 6.33 -39.33 -0.25 -0.63 16 18 Cl -0.04 -0.64 28.49 -51.86 -1.48 -2.12 16 19 C -0.08 -0.90 9.71 -39.91 -0.39 -1.29 16 20 C -0.13 -1.28 9.95 -39.92 -0.40 -1.68 16 21 C -0.07 -0.81 9.46 -39.45 -0.37 -1.18 16 22 C -0.14 -2.05 5.75 -106.74 -0.61 -2.66 16 23 C 0.10 1.45 6.43 -38.44 -0.25 1.20 16 24 Cl -0.04 -0.44 25.41 -51.86 -1.32 -1.76 16 25 C -0.20 -3.66 6.21 -105.08 -0.65 -4.31 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.84 6.31 -51.93 -0.33 0.51 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 31 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.14 1.20 7.04 -52.48 -0.37 0.83 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -31.31 328.84 -10.20 -41.51 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: -2.78 Total: -4.52 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -5.41 Total: -7.01 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.85 Total: -47.86 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -2.80 Total: -3.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.31 -10.20 -41.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255189323.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.845 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds