Wall clock time and date at job start Tue Mar 31 2020 05:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30056 * 126.15980 * 2 1 4 4 N 1.39760 * 110.32900 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.35222 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47320 * 270.00449 * 5 4 3 7 7 H 1.07993 * 120.00039 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99896 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00184 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47203 * 90.00022 * 10 8 6 12 12 H 1.48499 * 109.47366 * 209.99989 * 10 8 6 13 13 H 1.48503 * 109.47038 * 330.00157 * 10 8 6 14 14 C 1.37171 * 109.30203 * 0.02562 * 4 3 2 15 15 N 1.32087 * 132.88665 * 179.97438 * 14 4 3 16 16 C 1.33405 * 121.70443 * 179.97438 * 15 14 4 17 17 C 1.40819 * 120.56464 * 179.71940 * 16 15 14 18 18 C 1.36068 * 119.82703 * 179.78696 * 17 16 15 19 19 Cl 1.73607 * 119.43574 * 180.25906 * 18 17 16 20 20 C 1.39611 * 121.12409 * 0.47703 * 18 17 16 21 21 C 1.35979 * 120.84335 * 359.78116 * 20 18 17 22 22 C 1.40704 * 119.65378 * 359.97438 * 21 20 18 23 23 C 1.40346 * 121.03734 * 179.97438 * 22 21 20 24 24 Cl 1.73596 * 121.08695 * 0.04577 * 23 22 21 25 25 C 1.39168 * 117.82712 * 180.02562 * 23 22 21 26 26 H 1.08996 * 109.47860 * 269.97982 * 1 2 3 27 27 H 1.09006 * 109.46743 * 29.98325 * 1 2 3 28 28 H 1.09003 * 109.47193 * 149.97563 * 1 2 3 29 29 H 1.08999 * 109.47321 * 30.00265 * 5 4 3 30 30 H 1.08997 * 109.47186 * 150.00185 * 5 4 3 31 31 H 0.97000 * 120.00031 * 180.02562 * 9 8 6 32 32 H 1.08006 * 120.08414 * 0.25512 * 17 16 15 33 33 H 1.08001 * 119.58114 * 179.76184 * 20 18 17 34 34 H 1.08003 * 120.17125 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2744 1.0500 0.0000 4 7 3.6190 0.6688 -0.0006 5 6 4.7604 1.5871 -0.0013 6 6 5.1511 1.9019 -1.4223 7 1 4.6042 1.4616 -2.2429 8 6 6.2068 2.7520 -1.6749 9 7 6.8726 3.2886 -0.6756 10 14 6.6915 3.1416 -3.4363 11 1 5.9418 4.3352 -3.9036 12 1 8.1494 3.4168 -3.4992 13 1 6.3686 1.9823 -4.3065 14 6 3.7020 -0.7004 -0.0016 15 7 4.7225 -1.5391 -0.0028 16 6 4.5435 -2.8611 -0.0031 17 6 5.6489 -3.7334 -0.0104 18 6 5.4490 -5.0793 -0.0061 19 17 6.8193 -6.1453 -0.0084 20 6 4.1609 -5.6175 -0.0046 21 6 3.0675 -4.8091 -0.0028 22 6 3.2347 -3.4120 -0.0020 23 6 2.1268 -2.5506 -0.0007 24 17 0.5066 -3.1741 0.0012 25 6 2.3693 -1.1802 -0.0005 26 1 -0.3635 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3634 -0.8898 -0.5142 29 1 4.4859 2.5084 0.5125 30 1 5.6016 1.1215 0.5122 31 1 7.6151 3.8869 -0.8533 32 1 6.6529 -3.3351 -0.0117 33 1 4.0310 -6.6897 -0.0051 34 1 2.0759 -5.2371 -0.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255190122.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:36 Heat of formation + Delta-G solvation = 85.112126 kcal Electronic energy + Delta-G solvation = -23074.818328 eV Core-core repulsion = 19445.974378 eV Total energy + Delta-G solvation = -3628.843950 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 335.029 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.78952 -40.75587 -38.26222 -37.93332 -36.73627 -36.01628 -34.50858 -33.65728 -31.16993 -30.74138 -30.65333 -27.97975 -25.88818 -24.95787 -23.89975 -23.21135 -20.86964 -20.05841 -19.10417 -18.81564 -17.85968 -16.85533 -16.79922 -16.64474 -16.10408 -15.98889 -15.52786 -15.17634 -14.92680 -14.60952 -14.46464 -13.95099 -13.85395 -13.79939 -13.55516 -13.31702 -13.16052 -13.07893 -12.86295 -12.76815 -12.36778 -12.31433 -12.04813 -12.04381 -11.86180 -11.69767 -11.05509 -10.78413 -10.63526 -10.34280 -9.68007 -8.84651 -8.34818 -6.54429 -1.22259 -0.38070 0.44756 0.51108 0.90126 1.21677 1.32660 1.33728 1.36633 1.45931 1.63168 2.29247 2.77391 2.91207 2.97298 3.07102 3.22138 3.57245 3.58748 3.83596 3.98585 4.02388 4.24781 4.32487 4.61694 4.69339 4.74094 4.75482 4.82593 4.97656 5.06121 5.09561 5.11190 5.36833 5.44517 5.50781 5.75919 5.83001 6.45313 6.50148 6.85856 7.15558 8.70137 Molecular weight = 335.03amu Principal moments of inertia in cm(-1) A = 0.009170 B = 0.004607 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.587044 B = 6076.210820 C = 8595.440175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.107 3.893 3 N -0.254 5.254 4 N -0.392 5.392 5 C 0.290 3.710 6 C -0.553 4.553 7 H 0.045 0.955 8 C 0.021 3.979 9 N -0.919 5.919 10 Si 0.973 3.027 11 H -0.265 1.265 12 H -0.269 1.269 13 H -0.275 1.275 14 C 0.340 3.660 15 N -0.535 5.535 16 C 0.200 3.800 17 C -0.123 4.123 18 C 0.019 3.981 19 Cl -0.049 7.049 20 C -0.121 4.121 21 C -0.046 4.046 22 C -0.153 4.153 23 C 0.116 3.884 24 Cl 0.009 6.991 25 C -0.225 4.225 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.274 0.726 32 H 0.139 0.861 33 H 0.179 0.821 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.534 -20.892 2.058 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 N -0.067 5.067 4 N -0.182 5.182 5 C 0.171 3.829 6 C -0.591 4.591 7 H 0.064 0.936 8 C -0.180 4.180 9 N -0.557 5.557 10 Si 0.796 3.204 11 H -0.190 1.190 12 H -0.194 1.194 13 H -0.200 1.200 14 C 0.092 3.908 15 N -0.254 5.254 16 C 0.067 3.933 17 C -0.143 4.143 18 C -0.011 4.011 19 Cl -0.020 7.020 20 C -0.140 4.140 21 C -0.065 4.065 22 C -0.158 4.158 23 C 0.078 3.922 24 Cl 0.039 6.961 25 C -0.235 4.235 26 H 0.126 0.874 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.196 0.804 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -11.350 -19.109 2.125 22.327 hybrid contribution 0.374 -0.141 -0.655 0.767 sum -10.976 -19.249 1.470 22.207 Atomic orbital electron populations 1.20607 0.81404 1.05454 1.05528 1.24339 0.98662 0.86355 0.98042 1.76483 0.87329 1.24937 1.17933 1.48985 1.04577 1.01879 1.62784 1.19080 0.79246 0.86881 0.97671 1.21410 1.16523 1.29518 0.91652 0.93647 1.25776 0.95071 0.94617 1.02530 1.70013 1.21405 1.31200 1.33111 0.85335 0.78048 0.78675 0.78294 1.19010 1.19410 1.19964 1.19297 0.89829 0.86894 0.94824 1.66817 1.33565 1.03058 1.21918 1.18681 0.92405 0.87522 0.94684 1.20575 0.98503 0.91242 1.03990 1.20730 0.90226 0.89909 1.00204 1.98394 1.42954 1.64183 1.96430 1.21051 0.88507 1.02727 1.01710 1.21223 1.01300 0.88839 0.95122 1.18636 0.91158 0.96199 1.09825 1.20795 0.88153 0.89625 0.93674 1.98372 1.16225 1.86034 1.95485 1.20501 0.94012 0.94278 1.14753 0.87355 0.88953 0.88097 0.95008 0.95089 0.91697 0.84291 0.80351 0.80733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.01 71.24 0.71 -0.80 16 2 C 0.11 3.68 7.44 44.88 0.33 4.01 16 3 N -0.25 -11.30 12.37 -43.62 -0.54 -11.84 16 4 N -0.39 -19.89 3.63 -348.36 -1.26 -21.15 16 5 C 0.29 16.63 6.16 85.63 0.53 17.16 16 6 C -0.55 -33.20 9.39 25.60 0.24 -32.96 16 7 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 8 C 0.02 1.21 5.46 84.65 0.46 1.67 16 9 N -0.92 -54.95 13.29 21.45 0.28 -54.67 16 10 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.34 15.67 7.95 134.40 1.07 16.74 16 15 N -0.54 -24.18 10.33 -185.71 -1.92 -26.10 16 16 C 0.20 7.09 6.61 40.47 0.27 7.36 16 17 C -0.12 -3.66 9.71 22.40 0.22 -3.45 16 18 C 0.02 0.42 6.27 22.10 0.14 0.56 16 19 Cl -0.05 -0.95 28.91 -2.72 -0.08 -1.03 16 20 C -0.12 -2.02 9.72 22.08 0.21 -1.81 16 21 C -0.05 -0.85 9.45 22.35 0.21 -0.64 16 22 C -0.15 -4.29 5.75 -21.23 -0.12 -4.41 16 23 C 0.12 3.26 6.43 23.01 0.15 3.41 16 24 Cl 0.01 0.16 25.41 -2.72 -0.07 0.09 16 25 C -0.23 -8.19 6.21 -20.16 -0.13 -8.31 16 26 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.10 1.70 6.31 -2.39 -0.02 1.69 16 29 H 0.03 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.03 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 33 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.18 2.01 7.03 -2.91 -0.02 1.99 16 Total: -1.00 -72.95 329.50 3.90 -69.05 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: 1.17 Total: -0.31 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 4.30 Total: -1.46 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -3.44 Total: -113.75 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.15 Total: -0.94 kcal Total: -72.95 3.90 -69.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255190122.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.159 kcal (2) G-P(sol) polarization free energy of solvation -72.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds