Wall clock time and date at job start Tue Mar 31 2020 05:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47107 * 26.80421 * 3 2 1 5 5 C 1.36934 * 120.00158 * 273.40124 * 4 3 2 6 6 H 1.07998 * 120.00240 * 186.54761 * 5 4 3 7 7 C 1.38818 * 120.00125 * 6.54000 * 5 4 3 8 8 N 1.31622 * 119.99647 * 24.53821 * 7 5 4 9 9 Si 1.86795 * 120.00337 * 204.53695 * 7 5 4 10 10 H 1.48503 * 109.47212 * 84.92518 * 9 7 5 11 11 H 1.48501 * 109.47214 * 204.93032 * 9 7 5 12 12 H 1.48506 * 109.47176 * 324.92615 * 9 7 5 13 13 S 1.65593 * 119.99863 * 93.40372 * 4 3 2 14 14 O 1.42094 * 106.40389 * 156.45789 * 13 4 3 15 15 O 1.42102 * 106.40206 * 23.53749 * 13 4 3 16 16 C 1.76198 * 107.21695 * 269.99805 * 13 4 3 17 17 C 1.38424 * 119.75753 * 270.02136 * 16 13 4 18 18 C 1.37892 * 119.95715 * 180.02562 * 17 16 13 19 19 C 1.39788 * 119.77004 * 359.96239 * 18 17 16 20 20 C 1.39573 * 120.16490 * 359.88647 * 19 18 17 21 21 C 1.38246 * 119.75558 * 90.00335 * 16 13 4 22 22 C 1.50420 * 121.61727 * 180.35011 * 20 19 18 23 23 C 1.52618 * 111.26471 * 337.49098 * 22 20 19 24 24 C 1.53022 * 109.51519 * 54.44864 * 23 22 20 25 25 C 1.47597 * 119.72537 * 179.87223 * 19 18 17 26 26 O 1.21250 * 121.17643 * 348.69631 * 25 19 18 27 27 H 1.09006 * 109.47109 * 266.80404 * 3 2 1 28 28 H 1.09000 * 109.46857 * 146.80778 * 3 2 1 29 29 H 0.96998 * 119.99971 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.02259 * 0.07618 * 17 16 13 31 31 H 1.08000 * 120.11421 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.81953 * 0.02963 * 21 16 13 33 33 H 1.08996 * 109.11990 * 97.95058 * 22 20 19 34 34 H 1.09000 * 109.12093 * 217.09040 * 22 20 19 35 35 H 1.09006 * 109.48880 * 174.54808 * 23 22 20 36 36 H 1.09004 * 109.48893 * 294.58879 * 23 22 20 37 37 H 1.09005 * 109.86044 * 176.68917 * 24 23 22 38 38 H 1.09000 * 109.69189 * 55.74946 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2320 -0.6229 5 6 3.2593 -2.3628 0.1320 6 1 3.7181 -3.2396 -0.3005 7 6 2.8343 -2.3822 1.4534 8 7 1.8821 -1.5650 1.8505 9 14 3.6138 -3.5682 2.6679 10 1 4.8526 -2.9657 3.2226 11 1 2.6600 -3.8439 3.7722 12 1 3.9486 -4.8381 1.9745 13 16 3.4532 -1.2576 -2.2398 14 8 4.3782 -2.3193 -2.4301 15 8 3.7254 0.0865 -2.6121 16 6 1.9816 -1.7213 -3.0908 17 6 1.7214 -3.0588 -3.3347 18 6 0.5713 -3.4262 -4.0008 19 6 -0.3280 -2.4443 -4.4264 20 6 -0.0650 -1.0966 -4.1765 21 6 1.0952 -0.7465 -3.5096 22 6 -1.0137 -0.0138 -4.6128 23 6 -1.9022 -0.4858 -5.7604 24 6 -2.6167 -1.7771 -5.3559 25 6 -1.5574 -2.8385 -5.1418 26 8 -1.7116 -3.9704 -5.5481 27 1 2.9713 0.0581 1.0261 28 1 2.9709 0.8608 -0.5626 29 1 1.5854 -1.5782 2.7739 30 1 2.4184 -3.8141 -3.0028 31 1 0.3660 -4.4689 -4.1928 32 1 1.3090 0.2938 -3.3137 33 1 -1.6418 0.2718 -3.7691 34 1 -0.4398 0.8532 -4.9400 35 1 -2.6405 0.2829 -5.9886 36 1 -1.2887 -0.6739 -6.6416 37 1 -3.2974 -2.0876 -6.1486 38 1 -3.1717 -1.6157 -4.4318 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293179542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:50 Heat of formation + Delta-G solvation = -48.881151 kcal Electronic energy + Delta-G solvation = -26820.711105 eV Core-core repulsion = 22948.650318 eV Total energy + Delta-G solvation = -3872.060787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.32164 -38.01725 -36.86794 -36.13491 -35.53264 -34.69908 -34.57967 -31.90060 -31.25090 -30.44062 -27.99074 -27.65815 -24.27914 -23.53181 -23.11139 -21.42174 -19.36002 -18.70461 -18.12436 -17.25995 -16.83924 -16.43419 -16.12211 -15.91929 -15.07222 -14.84992 -14.62243 -14.52036 -14.24763 -13.88628 -13.56330 -13.36055 -13.21069 -13.12182 -12.84005 -12.48168 -12.14445 -12.00528 -11.90419 -11.60614 -11.54830 -11.24219 -11.23605 -11.19151 -11.00366 -10.98571 -10.81645 -10.68628 -10.42941 -10.27830 -10.15488 -9.83891 -9.49909 -8.94609 -8.62700 -8.50582 -6.92623 -4.23881 0.58876 1.40233 1.59616 2.35768 2.98307 3.05698 3.09590 3.52530 3.82844 3.83901 4.00030 4.01604 4.36813 4.45460 4.56181 4.61540 4.77841 4.82595 4.98446 5.09671 5.21018 5.32217 5.35254 5.42766 5.55882 5.56489 5.66328 5.76198 5.87123 5.97238 5.98293 6.07471 6.24963 6.36892 6.39168 6.51056 6.56897 6.75897 7.01740 7.12312 7.46719 7.89412 8.27774 8.70355 8.74568 10.05865 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.004410 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.249514 B = 6347.112730 C = 6410.779669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.240 3.760 3 C 0.222 3.778 4 N -0.794 5.794 5 C -0.240 4.240 6 H 0.130 0.870 7 C 0.030 3.970 8 N -0.832 5.832 9 Si 0.940 3.060 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.262 1.262 13 S 2.527 3.473 14 O -0.973 6.973 15 O -0.990 6.990 16 C -0.626 4.626 17 C -0.043 4.043 18 C -0.085 4.085 19 C -0.145 4.145 20 C -0.055 4.055 21 C -0.045 4.045 22 C -0.088 4.088 23 C -0.112 4.112 24 C -0.164 4.164 25 C 0.401 3.599 26 O -0.458 6.458 27 H 0.136 0.864 28 H 0.103 0.897 29 H 0.284 0.716 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.243 3.222 -5.479 7.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.079 4.079 3 C 0.093 3.907 4 N -0.616 5.616 5 C -0.388 4.388 6 H 0.148 0.852 7 C -0.182 4.182 8 N -0.471 5.471 9 Si 0.764 3.236 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.186 1.186 13 S 2.625 3.375 14 O -0.963 6.963 15 O -0.980 6.980 16 C -0.703 4.703 17 C -0.062 4.062 18 C -0.104 4.104 19 C -0.147 4.147 20 C -0.056 4.056 21 C -0.065 4.065 22 C -0.125 4.125 23 C -0.149 4.149 24 C -0.202 4.202 25 C 0.279 3.721 26 O -0.333 6.333 27 H 0.153 0.847 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.158 0.842 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.329 2.969 -6.260 8.170 hybrid contribution -0.369 -0.857 0.634 1.128 sum -4.698 2.112 -5.625 7.628 Atomic orbital electron populations 1.80872 1.13622 1.09835 1.11045 1.29516 0.95621 0.91645 0.91113 1.19097 0.81235 0.87442 1.02957 1.55582 1.71321 1.14625 1.20066 1.20307 1.30738 0.96056 0.91711 0.85241 1.25651 0.94875 0.98406 0.99275 1.69936 1.21836 1.35931 1.19403 0.85689 0.78991 0.79951 0.78921 1.19230 1.20634 1.18638 1.11747 0.78402 0.73421 0.73883 1.93383 1.61661 1.55834 1.85373 1.93367 1.85516 1.36065 1.83011 1.32728 1.26016 1.00318 1.11284 1.20868 0.95955 0.94983 0.94420 1.21453 0.93305 0.99175 0.96450 1.20312 0.97257 0.93954 1.03133 1.20073 0.95398 0.93044 0.97117 1.20761 0.92070 0.99131 0.94489 1.20495 0.96807 0.96477 0.98714 1.21418 0.98866 0.96163 0.98474 1.22245 0.97999 0.95646 1.04312 1.22824 0.86653 0.88111 0.74514 1.90502 1.78934 1.22424 1.41464 0.84698 0.87913 0.90482 0.84184 0.85030 0.84794 0.89558 0.89750 0.90108 0.91260 0.88894 0.87920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.57 18.54 42.15 0.78 -9.79 16 2 C 0.24 5.01 13.35 -20.76 -0.28 4.73 16 3 C 0.22 4.21 5.45 -6.83 -0.04 4.17 16 4 N -0.79 -16.48 2.88 -62.77 -0.18 -16.66 16 5 C -0.24 -5.18 9.48 -15.06 -0.14 -5.32 16 6 H 0.13 2.76 7.21 -52.49 -0.38 2.38 16 7 C 0.03 0.63 4.95 -17.43 -0.09 0.55 16 8 N -0.83 -18.01 8.92 55.49 0.49 -17.52 16 9 Si 0.94 16.79 29.62 -169.99 -5.03 11.75 16 10 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 11 H -0.28 -5.12 7.11 56.52 0.40 -4.71 16 12 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 13 S 2.53 52.91 5.65 -107.50 -0.61 52.31 16 14 O -0.97 -22.33 16.04 -57.17 -0.92 -23.25 16 15 O -0.99 -21.29 15.82 -57.17 -0.90 -22.19 16 16 C -0.63 -12.42 5.98 -39.51 -0.24 -12.66 16 17 C -0.04 -0.83 9.51 -39.64 -0.38 -1.20 16 18 C -0.09 -1.52 9.61 -39.13 -0.38 -1.89 16 19 C -0.15 -2.47 5.82 -105.00 -0.61 -3.08 16 20 C -0.06 -0.90 5.78 -104.23 -0.60 -1.50 16 21 C -0.05 -0.83 9.13 -39.55 -0.36 -1.19 16 22 C -0.09 -1.07 5.70 -28.21 -0.16 -1.23 16 23 C -0.11 -1.11 5.88 -26.92 -0.16 -1.27 16 24 C -0.16 -1.83 6.16 -27.49 -0.17 -2.00 16 25 C 0.40 6.14 6.90 -30.11 -0.21 5.93 16 26 O -0.46 -8.08 17.26 5.58 0.10 -7.98 16 27 H 0.14 2.48 6.39 -51.93 -0.33 2.15 16 28 H 0.10 1.69 6.94 -51.93 -0.36 1.33 16 29 H 0.28 5.91 8.31 -40.82 -0.34 5.57 16 30 H 0.14 2.54 7.60 -52.49 -0.40 2.14 16 31 H 0.13 2.15 7.72 -52.49 -0.40 1.75 16 32 H 0.13 2.30 7.59 -52.49 -0.40 1.90 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -28.73 340.30 -8.89 -37.62 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -3.94 Total: 6.54 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -3.80 Total: -15.96 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 1.10 Total: -43.96 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -1.73 Total: -53.42 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.75 kcal Atomic # 16 Polarization: 52.91 SS G_CDS: -0.61 Total: 52.31 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.73 -8.89 -37.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293179542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.263 kcal (2) G-P(sol) polarization free energy of solvation -28.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds