Wall clock time and date at job start Tue Mar 31 2020 05:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47107 * 26.80421 * 3 2 1 5 5 C 1.36934 * 120.00158 * 273.40124 * 4 3 2 6 6 H 1.07998 * 120.00240 * 186.54761 * 5 4 3 7 7 C 1.38818 * 120.00125 * 6.54000 * 5 4 3 8 8 N 1.31622 * 119.99647 * 24.53821 * 7 5 4 9 9 Si 1.86795 * 120.00337 * 204.53695 * 7 5 4 10 10 H 1.48503 * 109.47212 * 84.92518 * 9 7 5 11 11 H 1.48501 * 109.47214 * 204.93032 * 9 7 5 12 12 H 1.48506 * 109.47176 * 324.92615 * 9 7 5 13 13 S 1.65593 * 119.99863 * 93.40372 * 4 3 2 14 14 O 1.42094 * 106.40389 * 156.45789 * 13 4 3 15 15 O 1.42102 * 106.40206 * 23.53749 * 13 4 3 16 16 C 1.76198 * 107.21695 * 269.99805 * 13 4 3 17 17 C 1.38424 * 119.75753 * 270.02136 * 16 13 4 18 18 C 1.37892 * 119.95715 * 180.02562 * 17 16 13 19 19 C 1.39788 * 119.77004 * 359.96239 * 18 17 16 20 20 C 1.39573 * 120.16490 * 359.88647 * 19 18 17 21 21 C 1.38246 * 119.75558 * 90.00335 * 16 13 4 22 22 C 1.50420 * 121.61727 * 180.35011 * 20 19 18 23 23 C 1.52618 * 111.26471 * 337.49098 * 22 20 19 24 24 C 1.53022 * 109.51519 * 54.44864 * 23 22 20 25 25 C 1.47597 * 119.72537 * 179.87223 * 19 18 17 26 26 O 1.21250 * 121.17643 * 348.69631 * 25 19 18 27 27 H 1.09006 * 109.47109 * 266.80404 * 3 2 1 28 28 H 1.09000 * 109.46857 * 146.80778 * 3 2 1 29 29 H 0.96998 * 119.99971 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.02259 * 0.07618 * 17 16 13 31 31 H 1.08000 * 120.11421 * 179.97438 * 18 17 16 32 32 H 1.08002 * 119.81953 * 0.02963 * 21 16 13 33 33 H 1.08996 * 109.11990 * 97.95058 * 22 20 19 34 34 H 1.09000 * 109.12093 * 217.09040 * 22 20 19 35 35 H 1.09006 * 109.48880 * 174.54808 * 23 22 20 36 36 H 1.09004 * 109.48893 * 294.58879 * 23 22 20 37 37 H 1.09005 * 109.86044 * 176.68917 * 24 23 22 38 38 H 1.09000 * 109.69189 * 55.74946 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2320 -0.6229 5 6 3.2593 -2.3628 0.1320 6 1 3.7181 -3.2396 -0.3005 7 6 2.8343 -2.3822 1.4534 8 7 1.8821 -1.5650 1.8505 9 14 3.6138 -3.5682 2.6679 10 1 4.8526 -2.9657 3.2226 11 1 2.6600 -3.8439 3.7722 12 1 3.9486 -4.8381 1.9745 13 16 3.4532 -1.2576 -2.2398 14 8 4.3782 -2.3193 -2.4301 15 8 3.7254 0.0865 -2.6121 16 6 1.9816 -1.7213 -3.0908 17 6 1.7214 -3.0588 -3.3347 18 6 0.5713 -3.4262 -4.0008 19 6 -0.3280 -2.4443 -4.4264 20 6 -0.0650 -1.0966 -4.1765 21 6 1.0952 -0.7465 -3.5096 22 6 -1.0137 -0.0138 -4.6128 23 6 -1.9022 -0.4858 -5.7604 24 6 -2.6167 -1.7771 -5.3559 25 6 -1.5574 -2.8385 -5.1418 26 8 -1.7116 -3.9704 -5.5481 27 1 2.9713 0.0581 1.0261 28 1 2.9709 0.8608 -0.5626 29 1 1.5854 -1.5782 2.7739 30 1 2.4184 -3.8141 -3.0028 31 1 0.3660 -4.4689 -4.1928 32 1 1.3090 0.2938 -3.3137 33 1 -1.6418 0.2718 -3.7691 34 1 -0.4398 0.8532 -4.9400 35 1 -2.6405 0.2829 -5.9886 36 1 -1.2887 -0.6739 -6.6416 37 1 -3.2974 -2.0876 -6.1486 38 1 -3.1717 -1.6157 -4.4318 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293179542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:49 Heat of formation + Delta-G solvation = -65.420928 kcal Electronic energy + Delta-G solvation = -26821.428324 eV Core-core repulsion = 22948.650318 eV Total energy + Delta-G solvation = -3872.778005 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 334.082 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.56333 -39.34545 -38.47808 -37.87648 -36.61886 -36.44915 -36.26035 -33.51794 -32.59259 -31.68405 -29.25498 -29.09376 -25.90782 -24.85882 -24.23881 -22.65975 -20.69631 -20.21351 -19.71316 -18.78425 -18.38508 -17.90207 -17.43465 -17.31537 -16.48576 -16.25452 -16.06750 -15.76378 -15.55588 -15.30295 -14.86231 -14.74413 -14.55290 -14.39095 -14.25122 -14.05116 -13.53807 -13.32770 -13.24941 -13.21538 -13.13085 -12.85346 -12.72869 -12.60295 -12.28382 -12.18556 -12.14087 -12.04196 -11.98907 -11.84937 -11.70368 -11.36197 -10.73530 -10.39726 -10.22087 -9.85914 -8.51890 -5.91233 -0.79653 -0.22781 0.19312 1.06585 1.53931 1.60108 1.67639 1.92860 2.30351 2.38001 2.43271 2.73890 2.84024 2.88627 3.15186 3.41017 3.59054 3.64354 3.73770 3.79995 3.96081 4.04489 4.14797 4.26303 4.43034 4.45509 4.49373 4.67186 4.73072 4.80528 4.85163 4.94303 5.01645 5.07396 5.14125 5.17766 5.21113 5.22121 5.41157 5.73795 6.27010 6.27369 6.65535 7.08062 7.10161 8.46597 Molecular weight = 334.08amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.004410 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.249514 B = 6347.112730 C = 6410.779669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.251 3.749 3 C 0.220 3.780 4 N -0.802 5.802 5 C -0.268 4.268 6 H 0.123 0.877 7 C 0.008 3.992 8 N -0.854 5.854 9 Si 0.992 3.008 10 H -0.259 1.259 11 H -0.284 1.284 12 H -0.266 1.266 13 S 2.550 3.450 14 O -0.997 6.997 15 O -0.996 6.996 16 C -0.646 4.646 17 C -0.061 4.061 18 C -0.096 4.096 19 C -0.156 4.156 20 C -0.049 4.049 21 C -0.060 4.060 22 C -0.091 4.091 23 C -0.105 4.105 24 C -0.157 4.157 25 C 0.400 3.600 26 O -0.487 6.487 27 H 0.142 0.858 28 H 0.129 0.871 29 H 0.285 0.715 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 4.444 -6.294 8.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.067 4.067 3 C 0.091 3.909 4 N -0.625 5.625 5 C -0.414 4.414 6 H 0.140 0.860 7 C -0.202 4.202 8 N -0.494 5.494 9 Si 0.815 3.185 10 H -0.183 1.183 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.650 3.350 14 O -0.987 6.987 15 O -0.986 6.986 16 C -0.726 4.726 17 C -0.080 4.080 18 C -0.115 4.115 19 C -0.158 4.158 20 C -0.050 4.050 21 C -0.079 4.079 22 C -0.128 4.128 23 C -0.142 4.142 24 C -0.194 4.194 25 C 0.280 3.720 26 O -0.364 6.364 27 H 0.159 0.841 28 H 0.147 0.853 29 H 0.095 0.905 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.132 0.868 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.685 4.204 -7.046 9.982 hybrid contribution 0.020 -1.221 0.746 1.431 sum -5.665 2.983 -6.299 8.982 Atomic orbital electron populations 1.80854 1.14465 1.10817 1.12133 1.29848 0.95942 0.90742 0.90181 1.19343 0.80239 0.87532 1.03808 1.55331 1.72179 1.15106 1.19876 1.20341 1.32395 0.96197 0.92472 0.85991 1.26193 0.94742 0.99413 0.99841 1.69984 1.22606 1.37202 1.19589 0.84919 0.78350 0.78275 0.76940 1.18349 1.21000 1.18996 1.10466 0.77966 0.72767 0.73795 1.93351 1.62771 1.56727 1.85850 1.93350 1.85781 1.36237 1.83256 1.32476 1.25985 1.01120 1.13001 1.20940 0.96781 0.94891 0.95437 1.21642 0.93286 1.00134 0.96439 1.20765 0.97941 0.94254 1.02804 1.20564 0.95210 0.93951 0.95281 1.21024 0.92724 0.99214 0.94901 1.20678 0.96610 0.95493 0.99984 1.21459 0.99188 0.96337 0.97240 1.22314 0.96852 0.94437 1.05792 1.23379 0.86806 0.88646 0.73204 1.90494 1.79403 1.23913 1.42585 0.84057 0.85323 0.90469 0.84410 0.84304 0.83886 0.88653 0.87962 0.86340 0.91227 0.86757 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.17 18.54 20.01 0.37 -21.80 16 2 C 0.25 10.37 13.35 89.44 1.19 11.57 16 3 C 0.22 8.23 5.45 84.57 0.46 8.69 16 4 N -0.80 -33.46 2.88 -352.49 -1.02 -34.48 16 5 C -0.27 -11.71 9.48 84.04 0.80 -10.91 16 6 H 0.12 5.38 7.21 -2.91 -0.02 5.36 16 7 C 0.01 0.34 4.95 84.86 0.42 0.76 16 8 N -0.85 -37.00 8.92 21.65 0.19 -36.81 16 9 Si 0.99 34.32 29.62 68.60 2.03 36.35 16 10 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 11 H -0.28 -9.93 7.11 99.48 0.71 -9.22 16 12 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 13 S 2.55 107.52 5.65 -56.49 -0.32 107.20 16 14 O -1.00 -46.71 16.04 -128.00 -2.05 -48.77 16 15 O -1.00 -42.30 15.82 -128.00 -2.02 -44.32 16 16 C -0.65 -25.82 5.98 22.32 0.13 -25.69 16 17 C -0.06 -2.40 9.51 22.23 0.21 -2.19 16 18 C -0.10 -3.48 9.61 22.56 0.22 -3.26 16 19 C -0.16 -5.16 5.82 -20.11 -0.12 -5.28 16 20 C -0.05 -1.52 5.78 -19.61 -0.11 -1.63 16 21 C -0.06 -2.13 9.13 22.29 0.20 -1.92 16 22 C -0.09 -1.89 5.70 29.63 0.17 -1.73 16 23 C -0.11 -1.62 5.88 30.47 0.18 -1.44 16 24 C -0.16 -2.90 6.16 30.10 0.19 -2.71 16 25 C 0.40 11.53 6.90 28.41 0.20 11.73 16 26 O -0.49 -16.70 17.26 -2.94 -0.05 -16.75 16 27 H 0.14 5.14 6.39 -2.38 -0.02 5.13 16 28 H 0.13 4.08 6.94 -2.39 -0.02 4.06 16 29 H 0.28 11.82 8.31 -92.71 -0.77 11.05 16 30 H 0.14 5.26 7.60 -2.91 -0.02 5.24 16 31 H 0.14 4.66 7.72 -2.91 -0.02 4.63 16 32 H 0.14 4.73 7.59 -2.91 -0.02 4.71 16 33 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.10 1.81 8.11 -2.39 -0.02 1.79 16 35 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -61.83 340.30 2.38 -59.44 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 1.11 Total: 23.95 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 4.14 Total: -24.03 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -0.45 Total: -93.08 kcal Atomic # 8 Polarization: -105.71 SS G_CDS: -4.13 Total: -109.83 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 2.03 Total: 36.35 kcal Atomic # 16 Polarization: 107.52 SS G_CDS: -0.32 Total: 107.20 kcal Total: -61.83 2.38 -59.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293179542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.977 kcal (2) G-P(sol) polarization free energy of solvation -61.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds