Wall clock time and date at job start Tue Mar 31 2020 05:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31446 * 1 3 3 Si 1.86806 * 119.99969 * 2 1 4 4 H 1.48497 * 109.46997 * 274.66557 * 3 2 1 5 5 H 1.48502 * 109.46810 * 34.65817 * 3 2 1 6 6 H 1.48491 * 109.47579 * 154.65936 * 3 2 1 7 7 C 1.38820 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99643 * 168.88599 * 7 2 1 9 9 N 1.37055 * 120.00088 * 348.89280 * 7 2 1 10 10 C 1.36243 * 124.87398 * 338.49135 * 9 7 2 11 11 C 1.36287 * 109.70122 * 179.97438 * 10 9 7 12 12 C 1.46915 * 126.70380 * 179.97438 * 11 10 9 13 13 N 1.30099 * 120.00336 * 180.02562 * 12 11 10 14 14 N 1.40096 * 120.00290 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99919 * 179.97438 * 14 13 12 16 16 O 1.21581 * 120.00013 * 0.02562 * 15 14 13 17 17 C 1.48062 * 119.99894 * 180.02562 * 15 14 13 18 18 C 1.39863 * 120.92312 * 180.02562 * 17 15 14 19 19 C 1.38126 * 118.99230 * 179.97438 * 18 17 15 20 20 N 1.31822 * 120.90112 * 359.97438 * 19 18 17 21 21 C 1.31825 * 122.06073 * 0.02562 * 20 19 18 22 22 C 1.38124 * 120.89641 * 359.97438 * 21 20 19 23 23 C 1.47584 * 106.59269 * 0.26178 * 11 10 9 24 24 C 1.39188 * 133.90516 * 179.69459 * 23 11 10 25 25 C 1.37909 * 119.67891 * 180.02562 * 24 23 11 26 26 C 1.38679 * 120.29060 * 359.97438 * 25 24 23 27 27 C 1.37929 * 120.60401 * 359.54721 * 26 25 24 28 28 C 1.38332 * 124.87462 * 158.46856 * 9 7 2 29 29 H 0.97001 * 120.00439 * 0.02562 * 1 2 3 30 30 H 1.08001 * 125.14705 * 359.97438 * 10 9 7 31 31 H 1.08003 * 120.00154 * 0.02562 * 12 11 10 32 32 H 0.97005 * 119.99947 * 0.02562 * 14 13 12 33 33 H 1.07996 * 120.50631 * 359.70213 * 18 17 15 34 34 H 1.08000 * 119.54419 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.55355 * 179.97438 * 21 20 19 36 36 H 1.08000 * 120.49969 * 180.02562 * 22 21 20 37 37 H 1.08003 * 120.16223 * 0.06940 * 24 23 11 38 38 H 1.07998 * 119.85249 * 180.02562 * 25 24 23 39 39 H 1.07997 * 119.69646 * 180.02562 * 26 25 24 40 40 H 1.08003 * 120.03351 * 179.88362 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.3973 2.1034 -1.3954 5 1 1.4986 2.6223 0.7962 6 1 3.5918 1.4139 0.5992 7 6 2.0086 -1.2022 0.0005 8 1 3.0735 -1.2109 -0.1798 9 7 1.3427 -2.3779 0.2297 10 6 0.1403 -2.4818 0.8620 11 6 -0.2361 -3.7903 0.9213 12 6 -1.4660 -4.3237 1.5222 13 7 -1.6955 -5.6042 1.5063 14 7 -2.8681 -6.1130 2.0798 15 6 -3.1059 -7.4395 2.0628 16 8 -2.3027 -8.1946 1.5501 17 6 -4.3454 -7.9771 2.6684 18 6 -4.6115 -9.3502 2.6621 19 6 -5.7800 -9.8084 3.2389 20 7 -6.6366 -8.9714 3.7897 21 6 -6.4247 -7.6706 3.8172 22 6 -5.2822 -7.1262 3.2638 23 6 0.8363 -4.5673 0.2700 24 6 1.0340 -5.9233 0.0261 25 6 2.1760 -6.3406 -0.6248 26 6 3.1242 -5.4160 -1.0360 27 6 2.9357 -4.0686 -0.8092 28 6 1.7946 -3.6296 -0.1482 29 1 -0.4851 0.8400 -0.0004 30 1 -0.4283 -1.6526 1.2566 31 1 -2.1798 -3.6529 1.9773 32 1 -3.5091 -5.5105 2.4885 33 1 -3.9161 -10.0413 2.2092 34 1 -5.9942 -10.8669 3.2394 35 1 -7.1542 -7.0217 4.2788 36 1 -5.1149 -6.0596 3.2903 37 1 0.2964 -6.6451 0.3445 38 1 2.3320 -7.3921 -0.8159 39 1 4.0148 -5.7534 -1.5454 40 1 3.6811 -3.3567 -1.1317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409375214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:50 Heat of formation + Delta-G solvation = 88.082454 kcal Electronic energy + Delta-G solvation = -26105.116185 eV Core-core repulsion = 22271.676480 eV Total energy + Delta-G solvation = -3833.439705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.117 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.91426 -41.58063 -40.01352 -37.86544 -37.48374 -35.19415 -34.29732 -33.34754 -32.33857 -31.60622 -30.44040 -29.58219 -27.18454 -25.87309 -24.52602 -23.71108 -23.33099 -22.30198 -21.81894 -20.73863 -19.46698 -19.20873 -18.17754 -17.49263 -17.16769 -16.74370 -16.59349 -16.44662 -16.32615 -16.25178 -15.91593 -15.38532 -15.07429 -14.82278 -14.78062 -14.63754 -14.59929 -13.99866 -13.62773 -13.42205 -13.18480 -12.95141 -12.88595 -12.73356 -12.33549 -12.25379 -12.06704 -11.69087 -11.52831 -11.17662 -11.04391 -10.81657 -10.66646 -10.58778 -10.23260 -9.72157 -8.96080 -8.74124 -8.26299 -6.28261 -0.45915 0.06410 0.28766 0.74889 1.09272 1.40580 1.46549 1.48353 1.55582 1.85458 2.12454 2.44112 2.81796 2.92066 2.97782 3.28741 3.30502 3.48694 3.75974 3.87760 3.88152 4.00112 4.09966 4.21106 4.37679 4.46358 4.50091 4.69656 4.73225 4.77733 4.79512 4.88623 4.99491 5.04476 5.21107 5.30291 5.32619 5.41825 5.56913 5.68956 5.79490 5.92981 6.10262 6.19856 6.34582 6.50988 6.55443 6.86087 7.01542 7.42399 7.48110 8.37540 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.015722 B = 0.002531 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.495335 B =11059.644791 C =12787.088203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.008 3.992 3 Si 1.011 2.989 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.371 4.371 8 H 0.110 0.890 9 N -0.291 5.291 10 C 0.118 3.882 11 C -0.252 4.252 12 C 0.197 3.803 13 N -0.315 5.315 14 N -0.568 5.568 15 C 0.567 3.433 16 O -0.552 6.552 17 C -0.095 4.095 18 C -0.124 4.124 19 C 0.100 3.900 20 N -0.488 5.488 21 C 0.099 3.901 22 C -0.136 4.136 23 C -0.095 4.095 24 C -0.092 4.092 25 C -0.157 4.157 26 C -0.124 4.124 27 C -0.123 4.123 28 C 0.015 3.985 29 H 0.289 0.711 30 H 0.179 0.821 31 H 0.143 0.857 32 H 0.396 0.604 33 H 0.146 0.854 34 H 0.192 0.808 35 H 0.196 0.804 36 H 0.165 0.835 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.149 0.851 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.445 -6.803 6.548 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.198 4.198 3 Si 0.831 3.169 4 H -0.195 1.195 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.497 4.497 8 H 0.128 0.872 9 N 0.048 4.952 10 C -0.026 4.026 11 C -0.262 4.262 12 C -0.008 4.008 13 N -0.122 5.122 14 N -0.310 5.310 15 C 0.355 3.645 16 O -0.429 6.429 17 C -0.108 4.108 18 C -0.145 4.145 19 C -0.056 4.056 20 N -0.197 5.197 21 C -0.057 4.057 22 C -0.156 4.156 23 C -0.100 4.100 24 C -0.111 4.111 25 C -0.176 4.176 26 C -0.144 4.144 27 C -0.143 4.143 28 C -0.092 4.092 29 H 0.100 0.900 30 H 0.196 0.804 31 H 0.160 0.840 32 H 0.237 0.763 33 H 0.163 0.837 34 H 0.208 0.792 35 H 0.213 0.787 36 H 0.182 0.818 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.167 0.833 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.417 -8.157 6.266 13.946 hybrid contribution 0.425 2.195 -0.156 2.242 sum -8.992 -5.962 6.111 12.399 Atomic orbital electron populations 1.69905 1.07479 1.30448 1.42646 1.26422 0.96567 1.03383 0.93444 0.84661 0.78323 0.74992 0.78920 1.19454 1.19085 1.18318 1.20227 0.94732 0.82623 1.52167 0.87185 1.40246 1.14977 1.04248 1.35759 1.22274 0.88428 0.96012 0.95923 1.18245 0.97712 0.91740 1.18524 1.23625 0.94060 0.90872 0.92268 1.75344 1.03313 1.15575 1.17978 1.46598 1.19431 1.07813 1.57115 1.18438 0.86186 0.80642 0.79191 1.90763 1.48494 1.58081 1.45533 1.20211 0.94000 0.95839 1.00746 1.22449 0.99113 0.94531 0.98374 1.23212 0.88576 1.01413 0.92418 1.67661 1.31712 1.05280 1.15066 1.23328 0.95762 0.91448 0.95190 1.22659 0.94210 1.01937 0.96795 1.19127 0.94946 0.93110 1.02865 1.20610 0.97919 0.93422 0.99113 1.21085 0.94643 1.00066 1.01812 1.20936 1.00286 0.91109 1.02040 1.20242 0.95742 0.96674 1.01604 1.18954 0.99006 0.85578 1.05630 0.90035 0.80424 0.84039 0.76301 0.83656 0.79152 0.78681 0.81780 0.86994 0.84495 0.83296 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -41.27 10.86 21.64 0.23 -41.03 16 2 C 0.01 0.38 5.34 84.89 0.45 0.84 16 3 Si 1.01 35.54 29.57 68.60 2.03 37.57 16 4 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.27 -8.95 7.11 99.48 0.71 -8.24 16 6 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 7 C -0.37 -18.23 9.89 84.02 0.83 -17.40 16 8 H 0.11 5.18 7.85 -2.91 -0.02 5.16 16 9 N -0.29 -14.65 2.89 -342.07 -0.99 -15.64 16 10 C 0.12 5.60 9.85 83.55 0.82 6.43 16 11 C -0.25 -11.35 6.27 -18.99 -0.12 -11.47 16 12 C 0.20 7.27 10.98 87.22 0.96 8.23 16 13 N -0.32 -12.15 9.82 -52.42 -0.51 -12.66 16 14 N -0.57 -16.95 6.22 -175.41 -1.09 -18.04 16 15 C 0.57 17.94 7.91 86.85 0.69 18.63 16 16 O -0.55 -22.61 16.79 -3.97 -0.07 -22.68 16 17 C -0.10 -2.17 5.91 -19.88 -0.12 -2.28 16 18 C -0.12 -2.53 9.68 22.64 0.22 -2.32 16 19 C 0.10 1.63 11.17 84.67 0.95 2.58 16 20 N -0.49 -8.54 10.34 -196.03 -2.03 -10.57 16 21 C 0.10 1.37 11.17 84.67 0.95 2.32 16 22 C -0.14 -2.09 9.62 22.64 0.22 -1.87 16 23 C -0.10 -4.55 6.25 -20.05 -0.13 -4.68 16 24 C -0.09 -4.08 9.81 22.42 0.22 -3.86 16 25 C -0.16 -5.98 10.03 22.30 0.22 -5.76 16 26 C -0.12 -4.53 10.02 22.30 0.22 -4.31 16 27 C -0.12 -5.19 9.93 22.38 0.22 -4.97 16 28 C 0.02 0.75 6.73 38.84 0.26 1.01 16 29 H 0.29 12.46 8.31 -92.71 -0.77 11.69 16 30 H 0.18 8.19 6.35 -2.91 -0.02 8.17 16 31 H 0.14 3.94 8.03 -2.91 -0.02 3.91 16 32 H 0.40 8.11 6.80 -213.32 -1.45 6.66 16 33 H 0.15 3.03 7.74 -2.91 -0.02 3.01 16 34 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 35 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 36 H 0.16 1.54 6.54 -2.91 -0.02 1.52 16 37 H 0.11 5.17 7.23 -2.91 -0.02 5.15 16 38 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 39 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 40 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -69.65 357.51 4.10 -65.55 By element: Atomic # 1 Polarization: 36.72 SS G_CDS: -0.34 Total: 36.38 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 6.87 Total: -18.87 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -4.39 Total: -97.94 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.07 Total: -22.68 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Total: -69.65 4.10 -65.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409375214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.630 kcal (2) G-P(sol) polarization free energy of solvation -69.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds