Wall clock time and date at job start Tue Mar 31 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99950 * 2 1 4 4 H 1.48504 * 109.47094 * 240.00344 * 3 2 1 5 5 H 1.48505 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46969 * 120.00044 * 3 2 1 7 7 C 1.38810 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99978 * 204.82854 * 7 2 1 9 9 N 1.36942 * 119.99799 * 24.82668 * 7 2 1 10 10 C 1.46496 * 119.99734 * 228.61790 * 9 7 2 11 11 C 1.53004 * 117.50304 * 8.14069 * 10 9 7 12 12 C 1.52995 * 60.00082 * 252.50982 * 11 10 9 13 13 S 1.65598 * 120.00119 * 48.62202 * 9 7 2 14 14 O 1.42103 * 106.40087 * 336.45541 * 13 9 7 15 15 O 1.42092 * 106.40051 * 203.53712 * 13 9 7 16 16 C 1.76201 * 107.21718 * 89.99741 * 13 9 7 17 17 C 1.39317 * 119.51680 * 115.00372 * 16 13 9 18 18 C 1.36108 * 121.01715 * 179.70163 * 17 16 13 19 19 C 1.40551 * 119.70472 * 0.02562 * 18 17 16 20 20 C 1.40543 * 121.27351 * 179.97438 * 19 18 17 21 21 C 1.36097 * 119.65314 * 180.02562 * 20 19 18 22 22 C 1.39377 * 120.98055 * 0.02562 * 21 20 19 23 23 C 1.36109 * 120.98051 * 359.97438 * 22 21 20 24 24 C 1.40489 * 119.65875 * 0.02562 * 23 22 21 25 25 C 1.36329 * 119.51915 * 294.72385 * 16 13 9 26 26 F 1.35098 * 120.19819 * 0.26390 * 25 16 13 27 27 H 0.97001 * 120.00006 * 354.21582 * 1 2 3 28 28 H 1.08999 * 115.55046 * 153.84346 * 10 9 7 29 29 H 1.09001 * 117.49405 * 359.97438 * 11 10 9 30 30 H 1.08996 * 117.49987 * 145.01499 * 11 10 9 31 31 H 1.09002 * 117.49959 * 252.51298 * 12 11 10 32 32 H 1.08992 * 117.50300 * 107.48766 * 12 11 10 33 33 H 1.07990 * 119.49359 * 359.71266 * 17 16 13 34 34 H 1.08001 * 120.14697 * 179.97438 * 18 17 16 35 35 H 1.08001 * 120.17846 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.51457 * 179.97438 * 21 20 19 37 37 H 1.08000 * 119.50772 * 180.02562 * 22 21 20 38 38 H 1.07997 * 120.16495 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0154 -1.2455 0.3922 9 7 1.4205 -2.3330 -0.4990 10 6 1.4517 -3.5770 0.2741 11 6 1.9860 -3.5057 1.7061 12 6 2.8232 -4.1664 0.6091 13 16 0.6721 -2.2945 -1.9757 14 8 0.3178 -0.9385 -2.2107 15 8 -0.2729 -3.3556 -1.9744 16 6 1.8841 -2.7090 -3.1856 17 6 1.7449 -3.8832 -3.9224 18 6 2.6596 -4.2300 -4.8687 19 6 3.7637 -3.3943 -5.1095 20 6 4.7283 -3.7207 -6.0782 21 6 5.7847 -2.8876 -6.2839 22 6 5.9262 -1.7131 -5.5470 23 6 5.0118 -1.3651 -4.6009 24 6 3.9079 -2.2002 -4.3606 25 6 2.9414 -1.8732 -3.3911 26 9 3.0610 -0.7383 -2.6681 27 1 -0.4850 0.8358 0.0847 28 1 0.6390 -4.2753 0.0742 29 1 2.3148 -2.5332 2.0727 30 1 1.5248 -4.1570 2.4484 31 1 2.9128 -5.2526 0.6297 32 1 3.7024 -3.6288 0.2542 33 1 0.8980 -4.5280 -3.7401 34 1 2.5381 -5.1438 -5.4314 35 1 4.6322 -4.6282 -6.6558 36 1 6.5248 -3.1408 -7.0286 37 1 6.7737 -1.0691 -5.7301 38 1 5.1342 -0.4517 -4.0379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451133608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:48 Heat of formation + Delta-G solvation = -25.827230 kcal Electronic energy + Delta-G solvation = -27684.794472 eV Core-core repulsion = 23728.387506 eV Total energy + Delta-G solvation = -3956.406966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.46941 -39.97937 -37.18942 -36.23315 -35.56339 -34.10260 -33.29343 -32.24865 -30.66673 -30.29690 -28.84566 -24.97598 -23.60097 -23.13848 -21.65133 -21.59759 -20.57082 -18.96225 -18.01607 -17.54903 -17.21281 -16.17183 -15.87235 -15.47093 -15.33598 -15.00932 -14.88633 -14.36564 -14.25788 -13.90746 -13.82547 -13.31782 -13.09274 -12.95443 -12.61042 -12.32790 -12.25360 -11.73635 -11.42752 -11.23728 -11.15132 -11.08480 -10.93796 -10.83692 -10.63590 -10.43263 -10.36590 -10.26755 -9.98937 -9.71756 -9.62445 -9.37420 -8.71846 -8.62702 -7.70134 -7.55020 -6.56575 -4.15430 0.53919 0.97074 1.90477 2.07619 2.96944 3.20705 3.28204 3.32127 4.06014 4.13140 4.42097 4.51586 4.67664 4.72723 4.83673 4.92196 5.01181 5.17987 5.21249 5.35899 5.41474 5.47056 5.70993 5.76033 5.81600 5.83205 5.93467 5.98895 6.13107 6.25424 6.29337 6.36180 6.44361 6.48282 6.56784 6.62494 6.73648 6.85729 6.97681 7.14368 7.35496 7.47209 8.15244 8.85366 9.26630 10.48372 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.005960 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.650131 B = 4697.035063 C = 5496.673491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.066 3.934 3 Si 0.920 3.080 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.268 4.268 8 H 0.082 0.918 9 N -0.781 5.781 10 C 0.097 3.903 11 C -0.162 4.162 12 C -0.214 4.214 13 S 2.543 3.457 14 O -0.936 6.936 15 O -1.012 7.012 16 C -0.703 4.703 17 C -0.015 4.015 18 C -0.154 4.154 19 C -0.004 4.004 20 C -0.120 4.120 21 C -0.102 4.102 22 C -0.134 4.134 23 C -0.084 4.084 24 C -0.106 4.106 25 C 0.219 3.781 26 F -0.101 7.101 27 H 0.282 0.718 28 H 0.120 0.880 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.804 -5.386 -6.125 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.154 4.154 3 Si 0.745 3.255 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.417 4.417 8 H 0.100 0.900 9 N -0.602 5.602 10 C -0.012 4.012 11 C -0.201 4.201 12 C -0.254 4.254 13 S 2.641 3.359 14 O -0.924 6.924 15 O -1.001 7.001 16 C -0.778 4.778 17 C -0.034 4.034 18 C -0.172 4.172 19 C -0.004 4.004 20 C -0.138 4.138 21 C -0.121 4.121 22 C -0.152 4.152 23 C -0.102 4.102 24 C -0.108 4.108 25 C 0.198 3.802 26 F -0.078 7.078 27 H 0.093 0.907 28 H 0.138 0.862 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.683 -5.219 -6.703 12.147 hybrid contribution 1.043 0.760 -0.383 1.346 sum 9.726 -4.458 -7.086 12.833 Atomic orbital electron populations 1.69800 1.07288 1.29979 1.33055 1.25658 0.94907 1.00750 0.94093 0.86111 0.79634 0.80496 0.79259 1.18630 1.20589 1.19800 1.18942 0.98813 0.85436 1.38542 0.89988 1.52469 1.72549 1.11758 1.23391 1.21383 0.95428 0.89081 0.95316 1.23077 1.03243 1.02611 0.91143 1.23342 0.97131 0.98976 1.05928 1.11945 0.77628 0.73491 0.72852 1.93451 1.81209 1.33501 1.84273 1.93264 1.61888 1.58124 1.86856 1.32351 1.19582 1.03382 1.22475 1.20426 0.97784 0.93331 0.91839 1.21025 0.95104 1.00229 1.00864 1.17965 0.94946 0.92933 0.94550 1.20995 0.94496 1.00223 0.98090 1.20891 0.97704 0.94435 0.99020 1.20773 0.99693 0.97579 0.97112 1.21080 0.92891 0.98846 0.97349 1.18198 0.96646 0.97152 0.98771 1.16876 0.92708 0.82022 0.88597 1.91684 1.95110 1.46632 1.74413 0.90725 0.86221 0.87309 0.89705 0.89745 0.89117 0.84187 0.85157 0.85302 0.85917 0.85790 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.02 11.52 55.49 0.64 -20.39 16 2 C 0.07 1.68 4.02 -17.43 -0.07 1.61 16 3 Si 0.92 20.26 29.62 -169.99 -5.04 15.23 16 4 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.27 -6.58 6.38 -15.06 -0.10 -6.68 16 8 H 0.08 1.90 7.73 -52.49 -0.41 1.50 16 9 N -0.78 -18.91 3.05 -53.43 -0.16 -19.07 16 10 C 0.10 2.03 6.38 -67.93 -0.43 1.60 16 11 C -0.16 -2.90 9.84 -26.73 -0.26 -3.16 16 12 C -0.21 -3.72 10.28 -26.73 -0.27 -4.00 16 13 S 2.54 65.06 5.06 -107.50 -0.54 64.51 16 14 O -0.94 -26.84 13.35 -57.17 -0.76 -27.60 16 15 O -1.01 -26.88 15.70 -57.17 -0.90 -27.77 16 16 C -0.70 -15.58 5.88 -39.87 -0.23 -15.81 16 17 C -0.02 -0.29 9.45 -39.95 -0.38 -0.67 16 18 C -0.15 -2.45 9.77 -39.48 -0.39 -2.84 16 19 C 0.00 -0.06 5.74 -106.84 -0.61 -0.67 16 20 C -0.12 -1.51 9.77 -39.48 -0.39 -1.90 16 21 C -0.10 -1.16 9.95 -39.93 -0.40 -1.56 16 22 C -0.13 -1.65 9.95 -39.92 -0.40 -2.05 16 23 C -0.08 -1.29 9.61 -39.50 -0.38 -1.67 16 24 C -0.11 -1.94 5.74 -106.79 -0.61 -2.55 16 25 C 0.22 4.69 7.15 -39.32 -0.28 4.41 16 26 F -0.10 -2.31 14.23 2.25 0.03 -2.28 16 27 H 0.28 7.30 8.32 -40.82 -0.34 6.96 16 28 H 0.12 2.47 7.38 -51.93 -0.38 2.09 16 29 H 0.11 2.07 6.97 -51.93 -0.36 1.71 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.14 2.54 7.27 -52.49 -0.38 2.16 16 34 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.13 1.93 7.73 -52.49 -0.41 1.52 16 LS Contribution 335.80 15.07 5.06 5.06 Total: -1.00 -31.53 335.80 -10.91 -42.44 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.03 Total: 5.82 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: -5.20 Total: -35.95 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.48 Total: -39.46 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -1.66 Total: -55.37 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.03 Total: -2.28 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.04 Total: 15.23 kcal Atomic # 16 Polarization: 65.06 SS G_CDS: -0.54 Total: 64.51 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.53 -10.91 -42.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451133608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.611 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds