Wall clock time and date at job start Tue Mar 31 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99950 * 2 1 4 4 H 1.48504 * 109.47094 * 240.00344 * 3 2 1 5 5 H 1.48505 * 109.47129 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46969 * 120.00044 * 3 2 1 7 7 C 1.38810 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99978 * 204.82854 * 7 2 1 9 9 N 1.36942 * 119.99799 * 24.82668 * 7 2 1 10 10 C 1.46496 * 119.99734 * 228.61790 * 9 7 2 11 11 C 1.53004 * 117.50304 * 8.14069 * 10 9 7 12 12 C 1.52995 * 60.00082 * 252.50982 * 11 10 9 13 13 S 1.65598 * 120.00119 * 48.62202 * 9 7 2 14 14 O 1.42103 * 106.40087 * 336.45541 * 13 9 7 15 15 O 1.42092 * 106.40051 * 203.53712 * 13 9 7 16 16 C 1.76201 * 107.21718 * 89.99741 * 13 9 7 17 17 C 1.39317 * 119.51680 * 115.00372 * 16 13 9 18 18 C 1.36108 * 121.01715 * 179.70163 * 17 16 13 19 19 C 1.40551 * 119.70472 * 0.02562 * 18 17 16 20 20 C 1.40543 * 121.27351 * 179.97438 * 19 18 17 21 21 C 1.36097 * 119.65314 * 180.02562 * 20 19 18 22 22 C 1.39377 * 120.98055 * 0.02562 * 21 20 19 23 23 C 1.36109 * 120.98051 * 359.97438 * 22 21 20 24 24 C 1.40489 * 119.65875 * 0.02562 * 23 22 21 25 25 C 1.36329 * 119.51915 * 294.72385 * 16 13 9 26 26 F 1.35098 * 120.19819 * 0.26390 * 25 16 13 27 27 H 0.97001 * 120.00006 * 354.21582 * 1 2 3 28 28 H 1.08999 * 115.55046 * 153.84346 * 10 9 7 29 29 H 1.09001 * 117.49405 * 359.97438 * 11 10 9 30 30 H 1.08996 * 117.49987 * 145.01499 * 11 10 9 31 31 H 1.09002 * 117.49959 * 252.51298 * 12 11 10 32 32 H 1.08992 * 117.50300 * 107.48766 * 12 11 10 33 33 H 1.07990 * 119.49359 * 359.71266 * 17 16 13 34 34 H 1.08001 * 120.14697 * 179.97438 * 18 17 16 35 35 H 1.08001 * 120.17846 * 359.97438 * 20 19 18 36 36 H 1.08002 * 119.51457 * 179.97438 * 21 20 19 37 37 H 1.08000 * 119.50772 * 180.02562 * 22 21 20 38 38 H 1.07997 * 120.16495 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0154 -1.2455 0.3922 9 7 1.4205 -2.3330 -0.4990 10 6 1.4517 -3.5770 0.2741 11 6 1.9860 -3.5057 1.7061 12 6 2.8232 -4.1664 0.6091 13 16 0.6721 -2.2945 -1.9757 14 8 0.3178 -0.9385 -2.2107 15 8 -0.2729 -3.3556 -1.9744 16 6 1.8841 -2.7090 -3.1856 17 6 1.7449 -3.8832 -3.9224 18 6 2.6596 -4.2300 -4.8687 19 6 3.7637 -3.3943 -5.1095 20 6 4.7283 -3.7207 -6.0782 21 6 5.7847 -2.8876 -6.2839 22 6 5.9262 -1.7131 -5.5470 23 6 5.0118 -1.3651 -4.6009 24 6 3.9079 -2.2002 -4.3606 25 6 2.9414 -1.8732 -3.3911 26 9 3.0610 -0.7383 -2.6681 27 1 -0.4850 0.8358 0.0847 28 1 0.6390 -4.2753 0.0742 29 1 2.3148 -2.5332 2.0727 30 1 1.5248 -4.1570 2.4484 31 1 2.9128 -5.2526 0.6297 32 1 3.7024 -3.6288 0.2542 33 1 0.8980 -4.5280 -3.7401 34 1 2.5381 -5.1438 -5.4314 35 1 4.6322 -4.6282 -6.6558 36 1 6.5248 -3.1408 -7.0286 37 1 6.7737 -1.0691 -5.7301 38 1 5.1342 -0.4517 -4.0379 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451133608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:47 Heat of formation + Delta-G solvation = -44.949292 kcal Electronic energy + Delta-G solvation = -27685.623667 eV Core-core repulsion = 23728.387506 eV Total energy + Delta-G solvation = -3957.236161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 335.078 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.10428 -41.18119 -38.82352 -37.69803 -37.37829 -36.16079 -35.12882 -33.44510 -32.50290 -31.54479 -30.10757 -26.86668 -24.88150 -24.38591 -23.03422 -22.89204 -22.24914 -20.83211 -19.50034 -18.96334 -18.68569 -17.97379 -17.55222 -17.18022 -16.78226 -16.64954 -16.24713 -15.99280 -15.69151 -15.49089 -15.19729 -14.95864 -14.34470 -14.28257 -14.14532 -13.94875 -13.58503 -13.44606 -13.15392 -12.95321 -12.57875 -12.53811 -12.46022 -12.38652 -12.31238 -12.15364 -12.10457 -12.07432 -11.67594 -11.36487 -11.01216 -10.91921 -10.55326 -9.91958 -9.36450 -8.94184 -8.48327 -6.10477 -0.74812 -0.27863 0.04561 0.82181 1.40432 1.51715 1.53757 1.73716 2.28493 2.69440 2.92072 2.98221 3.03111 3.17151 3.39766 3.52564 3.74508 3.94576 3.96410 4.07576 4.14572 4.24034 4.30713 4.34949 4.37415 4.47519 4.68183 4.74092 4.80713 4.90216 4.92030 5.00650 5.16682 5.19828 5.24077 5.41619 5.42281 5.44347 5.52269 5.72742 5.76208 5.92531 6.21935 6.97270 7.38772 8.57329 Molecular weight = 335.08amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.005960 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.650131 B = 4697.035063 C = 5496.673491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.269 4.269 8 H 0.091 0.909 9 N -0.793 5.793 10 C 0.052 3.948 11 C -0.148 4.148 12 C -0.185 4.185 13 S 2.549 3.451 14 O -0.981 6.981 15 O -1.036 7.036 16 C -0.724 4.724 17 C -0.053 4.053 18 C -0.123 4.123 19 C -0.021 4.021 20 C -0.112 4.112 21 C -0.091 4.091 22 C -0.109 4.109 23 C -0.118 4.118 24 C -0.123 4.123 25 C 0.189 3.811 26 F -0.122 7.122 27 H 0.279 0.721 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.177 0.823 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.160 0.840 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.853 -7.367 -8.377 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.166 1.166 7 C -0.418 4.418 8 H 0.109 0.891 9 N -0.614 5.614 10 C -0.056 4.056 11 C -0.187 4.187 12 C -0.225 4.225 13 S 2.652 3.348 14 O -0.969 6.969 15 O -1.026 7.026 16 C -0.804 4.804 17 C -0.072 4.072 18 C -0.141 4.141 19 C -0.022 4.022 20 C -0.130 4.130 21 C -0.108 4.108 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.124 4.124 25 C 0.169 3.831 26 F -0.100 7.100 27 H 0.089 0.911 28 H 0.131 0.869 29 H 0.114 0.886 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.102 0.898 33 H 0.156 0.844 34 H 0.194 0.806 35 H 0.188 0.812 36 H 0.189 0.811 37 H 0.177 0.823 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.720 -7.197 -8.880 17.101 hybrid contribution 0.009 1.223 0.051 1.224 sum 12.729 -5.974 -8.829 16.603 Atomic orbital electron populations 1.69885 1.08856 1.30276 1.35995 1.26457 0.95299 1.03641 0.93505 0.85470 0.78854 0.77219 0.80045 1.19325 1.20809 1.16625 1.19124 0.98905 0.85672 1.38057 0.89134 1.52336 1.72972 1.12923 1.23213 1.21643 0.97828 0.88624 0.97546 1.23151 1.02443 1.02730 0.90407 1.23357 0.94644 1.00655 1.03817 1.11004 0.77794 0.72305 0.73681 1.93390 1.82605 1.35620 1.85292 1.93208 1.63384 1.58394 1.87576 1.31783 1.19381 1.05622 1.23586 1.20486 0.99638 0.93075 0.94027 1.21500 0.93183 1.00917 0.98510 1.18393 0.96142 0.92192 0.95440 1.21466 0.93210 1.01713 0.96599 1.21484 0.97799 0.92901 0.98626 1.21291 0.98938 0.97968 0.94491 1.21192 0.93648 0.99142 0.99606 1.18453 0.96766 0.98790 0.98429 1.17261 0.94073 0.81732 0.90076 1.91609 1.95350 1.47771 1.75282 0.91092 0.86905 0.88599 0.86691 0.86459 0.89793 0.84420 0.80576 0.81237 0.81148 0.82252 0.85596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.51 11.52 21.65 0.25 -47.27 16 2 C 0.03 1.41 4.02 84.86 0.34 1.75 16 3 Si 0.96 42.84 29.62 68.60 2.03 44.88 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.24 -9.53 7.11 99.48 0.71 -8.83 16 7 C -0.27 -13.84 6.38 84.03 0.54 -13.31 16 8 H 0.09 4.35 7.73 -2.91 -0.02 4.33 16 9 N -0.79 -40.43 3.05 -322.94 -0.99 -41.41 16 10 C 0.05 2.23 6.38 44.99 0.29 2.52 16 11 C -0.15 -5.26 9.84 30.59 0.30 -4.96 16 12 C -0.19 -6.29 10.28 30.59 0.31 -5.97 16 13 S 2.55 139.23 5.06 -56.49 -0.29 138.95 16 14 O -0.98 -60.51 13.35 -128.00 -1.71 -62.22 16 15 O -1.04 -58.70 15.70 -128.00 -2.01 -60.71 16 16 C -0.72 -33.69 5.88 22.08 0.13 -33.56 16 17 C -0.05 -2.07 9.45 22.03 0.21 -1.86 16 18 C -0.12 -3.64 9.77 22.34 0.22 -3.42 16 19 C -0.02 -0.63 5.74 -21.30 -0.12 -0.75 16 20 C -0.11 -2.17 9.77 22.33 0.22 -1.95 16 21 C -0.09 -1.46 9.95 22.05 0.22 -1.24 16 22 C -0.11 -2.19 9.95 22.05 0.22 -1.97 16 23 C -0.12 -3.47 9.61 22.32 0.21 -3.25 16 24 C -0.12 -4.43 5.74 -21.27 -0.12 -4.55 16 25 C 0.19 8.48 7.15 22.44 0.16 8.64 16 26 F -0.12 -5.97 14.23 44.97 0.64 -5.33 16 27 H 0.28 15.50 8.32 -92.71 -0.77 14.73 16 28 H 0.11 4.90 7.38 -2.39 -0.02 4.88 16 29 H 0.10 3.66 6.97 -2.39 -0.02 3.65 16 30 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 31 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.14 5.21 7.27 -2.92 -0.02 5.18 16 34 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 35 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.13 3.72 7.73 -2.91 -0.02 3.70 16 Total: -1.00 -76.62 335.80 2.15 -74.47 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 1.10 Total: 22.52 kcal Atomic # 6 Polarization: -67.01 SS G_CDS: 3.12 Total: -63.88 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -0.74 Total: -88.68 kcal Atomic # 8 Polarization: -119.21 SS G_CDS: -3.72 Total: -122.93 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.64 Total: -5.33 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 139.23 SS G_CDS: -0.29 Total: 138.95 kcal Total: -76.62 2.15 -74.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451133608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.520 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds