Wall clock time and date at job start Tue Mar 31 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86801 * 119.99961 * 2 1 4 4 H 1.48506 * 109.47192 * 274.98656 * 3 2 1 5 5 H 1.48496 * 109.47303 * 34.98584 * 3 2 1 6 6 H 1.48504 * 109.47178 * 154.99042 * 3 2 1 7 7 C 1.39909 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99832 * 147.61446 * 7 2 1 9 9 C 1.41154 * 119.99664 * 327.60823 * 7 2 1 10 10 C 1.40876 * 120.15928 * 157.95221 * 9 7 2 11 11 C 1.36371 * 119.82547 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16812 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.83131 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00022 * 37.75858 * 13 12 11 15 15 O 1.21282 * 119.99976 * 356.70334 * 14 13 12 16 16 C 1.50701 * 120.00142 * 176.69956 * 14 13 12 17 17 O 1.42901 * 109.47238 * 180.02562 * 16 14 13 18 18 C 1.35902 * 117.00165 * 179.97438 * 17 16 14 19 19 C 1.38749 * 120.08933 * 359.97438 * 18 17 16 20 20 C 1.38003 * 119.87650 * 180.02562 * 19 18 17 21 21 C 1.38541 * 120.29299 * 0.02562 * 20 19 18 22 22 C 1.38264 * 119.93721 * 0.02562 * 21 20 19 23 23 C 1.38415 * 119.90025 * 0.02562 * 22 21 20 24 24 C 1.51377 * 109.75540 * 180.02562 * 22 21 20 25 25 C 1.54341 * 105.17200 * 342.80669 * 24 22 21 26 26 C 1.51693 * 130.24393 * 179.84119 * 21 20 19 27 27 C 1.39471 * 120.33347 * 0.25314 * 12 11 10 28 28 C 1.36378 * 120.17008 * 359.48463 * 27 12 11 29 29 H 0.97003 * 120.00002 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.08671 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.91664 * 179.97438 * 11 10 9 32 32 H 0.96994 * 120.00002 * 217.76161 * 13 12 11 33 33 H 1.08996 * 109.47084 * 60.00242 * 16 14 13 34 34 H 1.09005 * 109.46815 * 300.00375 * 16 14 13 35 35 H 1.08001 * 120.06350 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.85423 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.91222 * 180.02562 * 23 22 21 38 38 H 1.08997 * 110.30277 * 223.87849 * 24 22 21 39 39 H 1.09006 * 110.38464 * 101.76665 * 24 22 21 40 40 H 1.08994 * 110.82548 * 144.59550 * 25 24 22 41 41 H 1.09008 * 110.81850 * 267.94571 * 25 24 22 42 42 H 1.09000 * 110.25576 * 78.26361 * 26 21 20 43 43 H 1.09003 * 110.49170 * 316.02089 * 26 21 20 44 44 H 1.08003 * 119.91774 * 179.74377 * 27 12 11 45 45 H 1.08003 * 120.08494 * 180.25594 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4968 2.6200 0.8027 6 1 3.5890 1.4121 0.5919 7 6 2.0083 -1.2116 -0.0005 8 1 2.9623 -1.2841 -0.5016 9 6 1.4672 -2.3392 0.6538 10 6 1.8854 -3.6352 0.2932 11 6 1.3577 -4.7198 0.9295 12 6 0.4060 -4.5484 1.9347 13 7 -0.1285 -5.6608 2.5794 14 6 0.6567 -6.7203 2.8579 15 8 1.8136 -6.7299 2.4941 16 6 0.0971 -7.8929 3.6213 17 8 1.1156 -8.8809 3.7905 18 6 0.7735 -10.0107 4.4640 19 6 -0.5157 -10.1657 4.9528 20 6 -0.8582 -11.3145 5.6365 21 6 0.0799 -12.3139 5.8377 22 6 1.3656 -12.1613 5.3524 23 6 1.7123 -11.0097 4.6672 24 6 2.1915 -13.3817 5.6989 25 6 1.4053 -14.0971 6.8180 26 6 -0.0464 -13.6478 6.5489 27 6 -0.0172 -3.2688 2.2932 28 6 0.5052 -2.1742 1.6696 29 1 -0.4850 0.8401 -0.0004 30 1 2.6219 -3.7694 -0.4852 31 1 1.6770 -5.7141 0.6539 32 1 -1.0660 -5.6733 2.8281 33 1 -0.7376 -8.3223 3.0673 34 1 -0.2496 -7.5579 4.5989 35 1 -1.2499 -9.3888 4.7985 36 1 -1.8619 -11.4349 6.0165 37 1 2.7164 -10.8905 4.2877 38 1 3.1754 -13.0824 6.0599 39 1 2.2898 -14.0328 4.8302 40 1 1.4994 -15.1791 6.7268 41 1 1.7383 -13.7622 7.8004 42 1 -0.5532 -14.3701 5.9090 43 1 -0.5862 -13.5297 7.4885 44 1 -0.7576 -3.1440 3.0696 45 1 0.1796 -1.1837 1.9511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000034391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:01 Heat of formation + Delta-G solvation = -30.135138 kcal Electronic energy + Delta-G solvation = -26602.355270 eV Core-core repulsion = 22742.299469 eV Total energy + Delta-G solvation = -3860.055802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.73942 -39.73527 -38.56139 -37.14431 -35.01927 -34.47530 -33.11309 -31.73173 -29.87074 -29.52075 -28.75504 -28.33855 -26.93319 -24.75908 -23.08769 -21.92321 -21.15452 -21.10310 -20.58222 -19.73560 -18.01626 -17.46175 -17.23193 -16.37263 -16.25890 -15.98060 -15.73072 -15.29594 -15.21963 -14.72987 -14.31021 -14.00795 -13.71409 -13.61663 -13.21767 -13.18363 -12.76213 -12.64162 -12.48718 -12.22284 -12.12157 -12.01616 -11.80965 -11.61950 -11.52076 -11.38653 -11.17514 -10.98192 -10.89039 -10.74217 -10.56471 -10.19203 -9.78511 -9.47963 -9.10011 -9.01872 -8.74257 -8.20733 -7.58409 -7.19638 -6.92557 -4.30784 1.09144 1.21686 2.48894 2.66830 2.90985 3.03416 3.06705 3.10054 3.30423 3.49330 3.85161 3.87105 4.21592 4.27211 4.46205 4.59126 4.65231 4.74045 4.83651 4.96671 4.99378 5.00083 5.07585 5.22076 5.36087 5.38469 5.46898 5.56753 5.62080 5.64554 5.80300 5.91914 6.06012 6.14947 6.16103 6.38980 6.41636 6.51172 6.71275 6.90162 6.96637 7.09560 7.21538 7.26004 7.52822 7.64061 7.84715 7.98718 8.20227 8.22555 8.51178 8.67879 8.80644 8.95252 9.98517 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.042421 B = 0.001656 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.893781 B =16908.312986 C =17294.971374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.464 4.464 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.224 4.224 11 C -0.064 4.064 12 C -0.025 4.025 13 N -0.644 5.644 14 C 0.498 3.502 15 O -0.510 6.510 16 C 0.044 3.956 17 O -0.286 6.286 18 C 0.135 3.865 19 C -0.211 4.211 20 C -0.066 4.066 21 C -0.142 4.142 22 C -0.059 4.059 23 C -0.138 4.138 24 C -0.083 4.083 25 C -0.121 4.121 26 C -0.076 4.076 27 C -0.099 4.099 28 C -0.171 4.171 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.395 0.605 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.756 -21.191 12.381 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.101 0.899 9 C 0.110 3.890 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.117 4.117 13 N -0.288 5.288 14 C 0.283 3.717 15 O -0.385 6.385 16 C -0.035 4.035 17 O -0.198 6.198 18 C 0.089 3.911 19 C -0.230 4.230 20 C -0.085 4.085 21 C -0.142 4.142 22 C -0.059 4.059 23 C -0.157 4.157 24 C -0.120 4.120 25 C -0.158 4.158 26 C -0.113 4.113 27 C -0.119 4.119 28 C -0.191 4.191 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.229 0.771 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.149 0.851 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.940 -21.017 12.024 24.532 hybrid contribution -0.592 0.985 0.133 1.157 sum -4.533 -20.033 12.157 23.867 Atomic orbital electron populations 1.69942 1.08104 1.29934 1.31100 1.25952 0.94372 1.01569 0.91486 0.86497 0.81545 0.80734 0.79247 1.19416 1.19859 1.18050 1.19534 1.05408 0.93745 1.30459 0.89921 1.17612 0.89653 0.91866 0.89837 1.20601 1.07064 0.92274 1.04412 1.20315 0.96271 0.98082 0.93758 1.16996 1.07801 0.84520 1.02355 1.42717 1.11889 1.15810 1.58419 1.19915 0.86814 0.83721 0.81278 1.90740 1.17057 1.79313 1.51355 1.22505 0.90941 0.88689 1.01334 1.86179 1.37469 1.25468 1.70673 1.18868 0.93058 0.86688 0.92446 1.21160 0.95954 1.00529 1.05314 1.20361 0.98791 0.92106 0.97204 1.20546 0.94346 0.96800 1.02505 1.20305 0.95297 0.94212 0.96081 1.19800 0.99808 0.92317 1.03753 1.21069 0.98482 0.93503 0.98907 1.22290 0.94574 1.00226 0.98735 1.21014 0.97451 0.93195 0.99645 1.20154 1.00656 0.91481 0.99653 1.20614 1.02554 0.96634 0.99317 0.90547 0.88646 0.87945 0.77144 0.89305 0.89218 0.85163 0.85991 0.85137 0.90423 0.89920 0.90561 0.90937 0.90546 0.90934 0.89192 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.18 11.78 55.55 0.65 -18.53 16 2 C 0.09 2.16 4.77 -17.34 -0.08 2.08 16 3 Si 0.90 18.08 29.66 -169.99 -5.04 13.04 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -12.22 8.94 -37.85 -0.34 -12.56 16 8 H 0.08 2.11 8.02 -52.49 -0.42 1.69 16 9 C 0.11 3.02 5.57 -106.80 -0.60 2.43 16 10 C -0.22 -5.73 9.74 -39.26 -0.38 -6.11 16 11 C -0.06 -1.57 8.59 -39.79 -0.34 -1.91 16 12 C -0.03 -0.56 6.25 -83.57 -0.52 -1.08 16 13 N -0.64 -11.10 5.30 -9.74 -0.05 -11.15 16 14 C 0.50 8.78 7.72 -10.98 -0.08 8.69 16 15 O -0.51 -11.52 14.12 -14.35 -0.20 -11.72 16 16 C 0.04 0.56 5.22 36.01 0.19 0.75 16 17 O -0.29 -4.32 9.67 -39.34 -0.38 -4.70 16 18 C 0.14 1.73 6.68 -39.26 -0.26 1.47 16 19 C -0.21 -2.20 9.04 -39.48 -0.36 -2.55 16 20 C -0.07 -0.62 10.03 -39.56 -0.40 -1.02 16 21 C -0.14 -1.34 6.15 -104.01 -0.64 -1.98 16 22 C -0.06 -0.60 6.13 -104.21 -0.64 -1.24 16 23 C -0.14 -1.67 9.98 -39.39 -0.39 -2.06 16 24 C -0.08 -0.61 6.77 -26.85 -0.18 -0.79 16 25 C -0.12 -0.71 7.07 -25.33 -0.18 -0.89 16 26 C -0.08 -0.51 6.79 -26.70 -0.18 -0.69 16 27 C -0.10 -2.24 9.90 -39.79 -0.39 -2.64 16 28 C -0.17 -4.35 8.74 -39.26 -0.34 -4.69 16 29 H 0.28 6.35 8.30 -40.82 -0.34 6.02 16 30 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 31 H 0.10 2.47 6.45 -52.49 -0.34 2.14 16 32 H 0.40 5.10 8.82 -40.82 -0.36 4.74 16 33 H 0.09 0.86 7.67 -51.93 -0.40 0.46 16 34 H 0.09 0.88 7.66 -51.93 -0.40 0.49 16 35 H 0.13 1.07 6.31 -52.49 -0.33 0.74 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 45 H 0.11 2.76 6.52 -52.48 -0.34 2.42 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -31.89 376.75 -11.42 -43.31 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.95 Total: 8.87 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -6.13 Total: -24.79 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.60 Total: -29.68 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.58 Total: -16.42 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.04 Total: 13.04 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.89 -11.42 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000034391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.179 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds