Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86801 * 119.99961 * 2 1 4 4 H 1.48506 * 109.47192 * 274.98656 * 3 2 1 5 5 H 1.48496 * 109.47303 * 34.98584 * 3 2 1 6 6 H 1.48504 * 109.47178 * 154.99042 * 3 2 1 7 7 C 1.39909 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99832 * 147.61446 * 7 2 1 9 9 C 1.41154 * 119.99664 * 327.60823 * 7 2 1 10 10 C 1.40876 * 120.15928 * 157.95221 * 9 7 2 11 11 C 1.36371 * 119.82547 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.16812 * 0.02562 * 11 10 9 13 13 N 1.39241 * 119.83131 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00022 * 37.75858 * 13 12 11 15 15 O 1.21282 * 119.99976 * 356.70334 * 14 13 12 16 16 C 1.50701 * 120.00142 * 176.69956 * 14 13 12 17 17 O 1.42901 * 109.47238 * 180.02562 * 16 14 13 18 18 C 1.35902 * 117.00165 * 179.97438 * 17 16 14 19 19 C 1.38749 * 120.08933 * 359.97438 * 18 17 16 20 20 C 1.38003 * 119.87650 * 180.02562 * 19 18 17 21 21 C 1.38541 * 120.29299 * 0.02562 * 20 19 18 22 22 C 1.38264 * 119.93721 * 0.02562 * 21 20 19 23 23 C 1.38415 * 119.90025 * 0.02562 * 22 21 20 24 24 C 1.51377 * 109.75540 * 180.02562 * 22 21 20 25 25 C 1.54341 * 105.17200 * 342.80669 * 24 22 21 26 26 C 1.51693 * 130.24393 * 179.84119 * 21 20 19 27 27 C 1.39471 * 120.33347 * 0.25314 * 12 11 10 28 28 C 1.36378 * 120.17008 * 359.48463 * 27 12 11 29 29 H 0.97003 * 120.00002 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.08671 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.91664 * 179.97438 * 11 10 9 32 32 H 0.96994 * 120.00002 * 217.76161 * 13 12 11 33 33 H 1.08996 * 109.47084 * 60.00242 * 16 14 13 34 34 H 1.09005 * 109.46815 * 300.00375 * 16 14 13 35 35 H 1.08001 * 120.06350 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.85423 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.91222 * 180.02562 * 23 22 21 38 38 H 1.08997 * 110.30277 * 223.87849 * 24 22 21 39 39 H 1.09006 * 110.38464 * 101.76665 * 24 22 21 40 40 H 1.08994 * 110.82548 * 144.59550 * 25 24 22 41 41 H 1.09008 * 110.81850 * 267.94571 * 25 24 22 42 42 H 1.09000 * 110.25576 * 78.26361 * 26 21 20 43 43 H 1.09003 * 110.49170 * 316.02089 * 26 21 20 44 44 H 1.08003 * 119.91774 * 179.74377 * 27 12 11 45 45 H 1.08003 * 120.08494 * 180.25594 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4968 2.6200 0.8027 6 1 3.5890 1.4121 0.5919 7 6 2.0083 -1.2116 -0.0005 8 1 2.9623 -1.2841 -0.5016 9 6 1.4672 -2.3392 0.6538 10 6 1.8854 -3.6352 0.2932 11 6 1.3577 -4.7198 0.9295 12 6 0.4060 -4.5484 1.9347 13 7 -0.1285 -5.6608 2.5794 14 6 0.6567 -6.7203 2.8579 15 8 1.8136 -6.7299 2.4941 16 6 0.0971 -7.8929 3.6213 17 8 1.1156 -8.8809 3.7905 18 6 0.7735 -10.0107 4.4640 19 6 -0.5157 -10.1657 4.9528 20 6 -0.8582 -11.3145 5.6365 21 6 0.0799 -12.3139 5.8377 22 6 1.3656 -12.1613 5.3524 23 6 1.7123 -11.0097 4.6672 24 6 2.1915 -13.3817 5.6989 25 6 1.4053 -14.0971 6.8180 26 6 -0.0464 -13.6478 6.5489 27 6 -0.0172 -3.2688 2.2932 28 6 0.5052 -2.1742 1.6696 29 1 -0.4850 0.8401 -0.0004 30 1 2.6219 -3.7694 -0.4852 31 1 1.6770 -5.7141 0.6539 32 1 -1.0660 -5.6733 2.8281 33 1 -0.7376 -8.3223 3.0673 34 1 -0.2496 -7.5579 4.5989 35 1 -1.2499 -9.3888 4.7985 36 1 -1.8619 -11.4349 6.0165 37 1 2.7164 -10.8905 4.2877 38 1 3.1754 -13.0824 6.0599 39 1 2.2898 -14.0328 4.8302 40 1 1.4994 -15.1791 6.7268 41 1 1.7383 -13.7622 7.8004 42 1 -0.5532 -14.3701 5.9090 43 1 -0.5862 -13.5297 7.4885 44 1 -0.7576 -3.1440 3.0696 45 1 0.1796 -1.1837 1.9511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000034391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = -46.486241 kcal Electronic energy + Delta-G solvation = -26603.064307 eV Core-core repulsion = 22742.299469 eV Total energy + Delta-G solvation = -3860.764839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.67751 -41.03099 -39.64461 -38.82094 -36.25070 -35.67902 -34.87108 -32.50280 -31.55367 -31.28512 -29.77787 -29.28598 -27.77656 -26.46920 -23.86138 -23.54886 -22.74364 -21.85726 -21.67183 -21.15514 -19.35912 -18.90379 -18.65445 -17.66389 -17.41499 -17.02640 -16.83230 -16.50094 -16.15243 -15.84715 -15.67638 -15.50161 -15.02708 -14.80891 -14.44668 -14.36752 -14.00794 -13.84247 -13.70733 -13.58536 -13.37280 -13.31782 -12.87348 -12.84492 -12.70324 -12.46177 -12.36149 -12.19388 -12.01242 -11.93534 -11.63737 -11.61778 -11.39006 -11.17844 -10.80256 -10.51424 -9.78188 -9.50964 -9.05723 -8.99814 -8.75929 -6.26299 0.33666 0.42417 0.77197 1.10999 1.35580 1.40660 1.52895 1.55299 1.73493 2.18974 2.60365 2.70906 2.73215 3.55883 3.62848 3.67299 3.69587 3.89505 4.03506 4.09291 4.15678 4.21051 4.36961 4.37602 4.40667 4.45269 4.49659 4.74797 4.87043 4.87478 4.97432 5.03923 5.05877 5.08193 5.12370 5.23747 5.24282 5.32105 5.36743 5.39833 5.42152 5.61171 5.68650 5.77275 5.84814 5.99009 6.05359 6.32039 6.37184 6.58608 6.66883 6.86365 6.95563 7.32919 8.18219 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.042421 B = 0.001656 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.893781 B =16908.312986 C =17294.971374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.053 3.947 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.084 3.916 10 C -0.247 4.247 11 C -0.078 4.078 12 C -0.011 4.011 13 N -0.632 5.632 14 C 0.496 3.504 15 O -0.567 6.567 16 C 0.054 3.946 17 O -0.322 6.322 18 C 0.109 3.891 19 C -0.210 4.210 20 C -0.070 4.070 21 C -0.146 4.146 22 C -0.071 4.071 23 C -0.164 4.164 24 C -0.086 4.086 25 C -0.116 4.116 26 C -0.075 4.075 27 C -0.095 4.095 28 C -0.189 4.189 29 H 0.296 0.704 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.421 0.579 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.117 0.883 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.129 0.871 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.181 -22.357 14.646 27.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.167 4.167 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.183 1.183 6 H -0.187 1.187 7 C -0.532 4.532 8 H 0.092 0.908 9 C 0.081 3.919 10 C -0.267 4.267 11 C -0.098 4.098 12 C -0.104 4.104 13 N -0.279 5.279 14 C 0.284 3.716 15 O -0.445 6.445 16 C -0.024 4.024 17 O -0.236 6.236 18 C 0.064 3.936 19 C -0.229 4.229 20 C -0.088 4.088 21 C -0.147 4.147 22 C -0.071 4.071 23 C -0.183 4.183 24 C -0.123 4.123 25 C -0.154 4.154 26 C -0.112 4.112 27 C -0.115 4.115 28 C -0.209 4.209 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.259 0.741 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.147 0.853 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.423 -22.214 14.308 27.192 hybrid contribution 0.120 1.149 -0.524 1.269 sum -6.303 -21.065 13.784 25.951 Atomic orbital electron populations 1.69929 1.09324 1.31574 1.31024 1.26714 0.95102 1.04377 0.90463 0.85368 0.79605 0.76139 0.79719 1.18381 1.18275 1.18702 1.19728 1.05779 0.95358 1.32356 0.90784 1.17930 0.90781 0.92283 0.90911 1.20712 1.07937 0.92839 1.05207 1.20418 0.97231 0.97376 0.94738 1.17057 1.06167 0.86213 1.01007 1.42572 1.13271 1.14415 1.57673 1.20860 0.86019 0.84509 0.80253 1.90725 1.19766 1.80491 1.53546 1.22537 0.90635 0.86552 1.02674 1.86109 1.39068 1.26653 1.71770 1.19074 0.94467 0.86245 0.93775 1.21442 0.95185 1.01593 1.04632 1.20754 1.00073 0.91508 0.96450 1.21035 0.93875 0.97964 1.01793 1.20656 0.96576 0.94310 0.95606 1.19958 0.99586 0.93615 1.05140 1.21183 0.98514 0.92712 0.99888 1.22322 0.93723 1.01237 0.98073 1.21105 0.98161 0.91782 1.00153 1.20454 1.00674 0.90642 0.99720 1.20660 1.03147 0.97312 0.99777 0.89345 0.89181 0.88422 0.74090 0.85621 0.85638 0.82676 0.83148 0.86536 0.90331 0.89247 0.88579 0.90672 0.89410 0.89535 0.85306 0.88111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.09 11.78 21.82 0.26 -39.83 16 2 C 0.05 2.66 4.77 85.24 0.41 3.06 16 3 Si 0.97 37.35 29.66 68.60 2.03 39.38 16 4 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 5 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.50 -27.77 8.94 23.39 0.21 -27.56 16 8 H 0.07 4.02 8.02 -2.91 -0.02 4.00 16 9 C 0.08 4.66 5.57 -21.28 -0.12 4.54 16 10 C -0.25 -13.35 9.74 22.48 0.22 -13.13 16 11 C -0.08 -3.90 8.59 22.13 0.19 -3.71 16 12 C -0.01 -0.51 6.25 38.56 0.24 -0.26 16 13 N -0.63 -20.58 5.30 -303.11 -1.61 -22.18 16 14 C 0.50 16.97 7.72 87.66 0.68 17.65 16 15 O -0.57 -26.21 14.12 16.00 0.23 -25.98 16 16 C 0.05 1.22 5.22 71.24 0.37 1.60 16 17 O -0.32 -9.66 9.67 -73.40 -0.71 -10.37 16 18 C 0.11 2.74 6.68 22.48 0.15 2.89 16 19 C -0.21 -3.83 9.04 22.34 0.20 -3.63 16 20 C -0.07 -1.10 10.03 22.29 0.22 -0.88 16 21 C -0.15 -2.44 6.15 -19.47 -0.12 -2.56 16 22 C -0.07 -1.41 6.13 -19.60 -0.12 -1.53 16 23 C -0.16 -4.08 9.98 22.40 0.22 -3.86 16 24 C -0.09 -1.17 6.77 30.52 0.21 -0.96 16 25 C -0.12 -1.07 7.07 31.50 0.22 -0.84 16 26 C -0.08 -0.78 6.79 30.61 0.21 -0.57 16 27 C -0.10 -4.20 9.90 22.13 0.22 -3.98 16 28 C -0.19 -9.75 8.74 22.48 0.20 -9.55 16 29 H 0.30 13.15 8.30 -92.71 -0.77 12.38 16 30 H 0.09 4.75 8.06 -2.91 -0.02 4.73 16 31 H 0.10 4.94 6.45 -2.91 -0.02 4.92 16 32 H 0.42 9.37 8.82 -92.71 -0.82 8.55 16 33 H 0.13 1.94 7.67 -2.39 -0.02 1.92 16 34 H 0.13 1.97 7.66 -2.38 -0.02 1.95 16 35 H 0.16 1.89 6.31 -2.91 -0.02 1.87 16 36 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 37 H 0.12 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 45 H 0.10 5.25 6.52 -2.91 -0.02 5.23 16 Total: -1.00 -74.25 376.75 4.22 -70.03 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.21 Total: 32.24 kcal Atomic # 6 Polarization: -47.10 SS G_CDS: 3.81 Total: -43.29 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -1.35 Total: -62.01 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.48 Total: -36.35 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -74.25 4.22 -70.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000034391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.546 kcal (2) G-P(sol) polarization free energy of solvation -74.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds