Wall clock time and date at job start Tue Mar 31 2020 05:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86803 * 120.00302 * 2 1 4 4 H 1.48501 * 109.46625 * 274.97892 * 3 2 1 5 5 H 1.48500 * 109.46771 * 34.97609 * 3 2 1 6 6 H 1.48500 * 109.47039 * 154.97652 * 3 2 1 7 7 C 1.39927 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99859 * 146.38073 * 7 2 1 9 9 C 1.41208 * 119.99862 * 326.37332 * 7 2 1 10 10 C 1.40826 * 120.18039 * 156.76173 * 9 7 2 11 11 C 1.36440 * 119.81536 * 180.02562 * 10 9 7 12 12 C 1.39308 * 120.18126 * 359.97438 * 11 10 9 13 13 O 1.35700 * 119.81495 * 179.97438 * 12 11 10 14 14 C 1.34743 * 117.00604 * 75.91960 * 13 12 11 15 15 O 1.21482 * 119.99470 * 355.19199 * 14 13 12 16 16 C 1.47691 * 119.99886 * 175.19370 * 14 13 12 17 17 C 1.39622 * 120.57145 * 0.02562 * 16 14 13 18 18 N 1.31661 * 120.55695 * 179.72686 * 17 16 14 19 19 C 1.31961 * 121.88619 * 0.27219 * 18 17 16 20 20 C 1.38319 * 121.09562 * 0.02562 * 19 18 17 21 21 C 1.38384 * 119.31454 * 359.97438 * 20 19 18 22 22 C 1.50698 * 120.86081 * 180.02562 * 21 20 19 23 23 F 1.39902 * 109.46944 * 359.97438 * 22 21 20 24 24 F 1.39897 * 109.47221 * 119.99921 * 22 21 20 25 25 F 1.39902 * 109.46998 * 240.00103 * 22 21 20 26 26 C 1.39309 * 120.36594 * 0.25398 * 12 11 10 27 27 C 1.36433 * 120.18749 * 359.48710 * 26 12 11 28 28 H 0.96999 * 119.99382 * 0.02562 * 1 2 3 29 29 H 1.08010 * 120.09357 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.91263 * 179.97438 * 11 10 9 31 31 H 1.07995 * 119.72098 * 0.02562 * 17 16 14 32 32 H 1.07993 * 119.45179 * 179.97438 * 19 18 17 33 33 H 1.08001 * 120.34632 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.90465 * 179.74585 * 26 12 11 35 35 H 1.08001 * 120.09706 * 180.25298 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4967 2.6200 0.8026 6 1 3.5889 1.4120 0.5922 7 6 2.0082 -1.2118 0.0005 8 1 2.9527 -1.2903 -0.5173 9 6 1.4794 -2.3321 0.6783 10 6 1.8715 -3.6332 0.3087 11 6 1.3554 -4.7103 0.9683 12 6 0.4434 -4.5257 2.0050 13 8 -0.0656 -5.6023 2.6556 14 6 0.7402 -6.2185 3.5425 15 8 1.8943 -5.8598 3.6658 16 6 0.2202 -7.3299 4.3645 17 6 -1.1040 -7.7521 4.2320 18 7 -1.5657 -8.7464 4.9611 19 6 -0.8095 -9.3755 5.8407 20 6 0.5112 -9.0136 6.0359 21 6 1.0456 -7.9744 5.2946 22 6 2.4802 -7.5515 5.4786 23 9 3.0810 -8.3529 6.4554 24 9 3.1677 -7.6957 4.2688 25 9 2.5236 -6.2129 5.8830 26 6 0.0466 -3.2422 2.3736 27 6 0.5572 -2.1542 1.7278 28 1 -0.4849 0.8401 -0.0004 29 1 2.5789 -3.7780 -0.4946 30 1 1.6548 -5.7088 0.6859 31 1 -1.7537 -7.2621 3.5220 32 1 -1.2289 -10.1859 6.4183 33 1 1.1190 -9.5365 6.7594 34 1 -0.6640 -3.1078 3.1757 35 1 0.2517 -1.1597 2.0175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000077868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:57 Heat of formation + Delta-G solvation = -162.309855 kcal Electronic energy + Delta-G solvation = -28411.800481 eV Core-core repulsion = 23732.490224 eV Total energy + Delta-G solvation = -4679.310257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.071 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.10937 -47.68885 -47.43901 -41.04418 -39.91603 -37.51492 -36.12015 -33.69008 -33.68014 -32.14335 -29.81805 -29.44961 -27.24385 -25.68165 -24.70080 -23.06255 -22.01687 -21.22465 -20.33088 -18.98759 -18.54269 -18.38876 -17.77464 -17.51673 -17.07014 -16.29708 -15.81773 -15.68256 -15.33660 -15.03131 -14.50517 -14.34529 -14.22526 -14.20893 -13.95988 -13.81294 -13.63418 -13.55972 -13.29137 -12.87088 -12.70050 -12.36634 -12.26539 -12.10124 -11.67528 -11.32457 -10.95564 -10.91980 -10.67815 -10.61754 -10.44160 -10.10591 -9.90924 -9.71333 -9.40006 -9.11440 -7.74976 -7.57767 -7.12310 -4.50365 0.01154 0.44791 2.27644 2.43976 2.57071 2.87011 2.93730 2.97493 3.04623 3.27293 3.35926 3.55826 3.76667 3.82001 3.93544 4.29595 4.31078 4.37475 4.50611 4.66164 5.00764 5.11529 5.26842 5.45971 5.59643 5.98005 6.06725 6.12801 6.65199 6.80570 6.89890 6.97604 7.09914 7.31149 7.38869 7.52913 7.76709 7.82947 8.00008 8.27158 8.46107 8.63224 8.80804 9.82101 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.020807 B = 0.002955 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.406852 B = 9474.221829 C =10179.525858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.088 3.912 3 Si 0.899 3.101 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.455 4.455 8 H 0.087 0.913 9 C 0.123 3.877 10 C -0.224 4.224 11 C -0.062 4.062 12 C -0.093 4.093 13 O -0.264 6.264 14 C 0.471 3.529 15 O -0.470 6.470 16 C -0.119 4.119 17 C 0.161 3.839 18 N -0.468 5.468 19 C 0.128 3.872 20 C -0.139 4.139 21 C -0.087 4.087 22 C 0.515 3.485 23 F -0.182 7.182 24 F -0.158 7.158 25 F -0.158 7.158 26 C -0.073 4.073 27 C -0.177 4.177 28 H 0.288 0.712 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.187 0.813 32 H 0.175 0.825 33 H 0.159 0.841 34 H 0.095 0.905 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.665 -13.926 10.793 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.192 1.192 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.481 4.481 8 H 0.105 0.895 9 C 0.120 3.880 10 C -0.243 4.243 11 C -0.081 4.081 12 C -0.134 4.134 13 O -0.178 6.178 14 C 0.314 3.686 15 O -0.356 6.356 16 C -0.122 4.122 17 C 0.004 3.996 18 N -0.176 5.176 19 C -0.029 4.029 20 C -0.159 4.159 21 C -0.096 4.096 22 C 0.460 3.540 23 F -0.163 7.163 24 F -0.139 7.139 25 F -0.139 7.139 26 C -0.092 4.092 27 C -0.196 4.196 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.110 0.890 31 H 0.203 0.797 32 H 0.192 0.808 33 H 0.176 0.824 34 H 0.114 0.886 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.361 -13.902 10.669 17.682 hybrid contribution 1.494 1.095 0.143 1.858 sum -0.868 -12.806 10.812 16.782 Atomic orbital electron populations 1.69931 1.08261 1.30494 1.28971 1.26037 0.94418 1.01882 0.91313 0.86441 0.81598 0.80326 0.79427 1.19210 1.19647 1.17841 1.19633 1.06026 0.93928 1.28512 0.89472 1.17639 0.88939 0.91868 0.89547 1.20518 1.07395 0.92147 1.04238 1.20347 0.94989 0.97673 0.95106 1.17863 1.11192 0.83602 1.00743 1.84686 1.42946 1.41336 1.48841 1.21565 0.85449 0.82191 0.79376 1.90912 1.17786 1.62769 1.64150 1.20271 0.96393 0.97611 0.97937 1.23448 0.91391 0.90356 0.94433 1.67848 1.37758 1.06874 1.05106 1.23156 0.89531 0.97023 0.93214 1.22065 0.97807 0.96125 0.99884 1.20662 0.93437 0.97718 0.97833 1.17812 0.85870 0.75699 0.74578 1.93159 1.85492 1.73899 1.63748 1.93275 1.81025 1.95306 1.44295 1.93282 1.96680 1.33621 1.90309 1.20299 0.98864 0.91163 0.98900 1.20638 1.03120 0.96644 0.99187 0.90115 0.88189 0.88995 0.79657 0.80825 0.82367 0.88644 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.36 11.96 55.55 0.66 -17.69 16 2 C 0.09 2.08 4.72 -17.33 -0.08 2.00 16 3 Si 0.90 17.48 29.67 -169.99 -5.04 12.44 16 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.25 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.45 -11.56 8.93 -37.82 -0.34 -11.90 16 8 H 0.09 2.13 8.02 -52.49 -0.42 1.71 16 9 C 0.12 3.21 5.56 -106.81 -0.59 2.61 16 10 C -0.22 -5.51 9.74 -39.25 -0.38 -5.89 16 11 C -0.06 -1.47 9.44 -39.83 -0.38 -1.85 16 12 C -0.09 -2.15 5.20 -38.79 -0.20 -2.35 16 13 O -0.26 -5.28 9.29 -24.18 -0.22 -5.51 16 14 C 0.47 8.80 7.61 34.59 0.26 9.07 16 15 O -0.47 -10.11 11.06 -19.25 -0.21 -10.33 16 16 C -0.12 -1.70 5.87 -104.84 -0.62 -2.32 16 17 C 0.16 1.93 10.79 -17.11 -0.18 1.74 16 18 N -0.47 -4.98 10.35 -12.89 -0.13 -5.12 16 19 C 0.13 1.02 11.17 -17.47 -0.20 0.82 16 20 C -0.14 -1.22 9.49 -39.50 -0.37 -1.59 16 21 C -0.09 -1.11 5.43 -103.89 -0.56 -1.67 16 22 C 0.51 7.51 2.78 36.00 0.10 7.61 16 23 F -0.18 -2.20 16.08 2.25 0.04 -2.17 16 24 F -0.16 -2.66 15.10 2.25 0.03 -2.62 16 25 F -0.16 -2.69 15.18 2.25 0.03 -2.66 16 26 C -0.07 -1.74 9.92 -39.83 -0.40 -2.13 16 27 C -0.18 -4.48 8.76 -39.25 -0.34 -4.83 16 28 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 29 H 0.10 2.30 8.06 -52.48 -0.42 1.87 16 30 H 0.09 1.99 8.06 -52.49 -0.42 1.56 16 31 H 0.19 2.01 7.62 -52.49 -0.40 1.61 16 32 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.16 0.94 7.26 -52.49 -0.38 0.56 16 34 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 35 H 0.11 2.77 6.66 -52.49 -0.35 2.42 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -29.37 325.51 -6.60 -35.97 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -2.38 Total: 3.47 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -4.28 Total: -10.68 kcal Atomic # 7 Polarization: -23.34 SS G_CDS: 0.53 Total: -22.81 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.44 Total: -15.83 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 0.10 Total: -7.45 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.04 Total: 12.44 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.37 -6.60 -35.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000077868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.344 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds