Wall clock time and date at job start Tue Mar 31 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86803 * 120.00302 * 2 1 4 4 H 1.48501 * 109.46625 * 274.97892 * 3 2 1 5 5 H 1.48500 * 109.46771 * 34.97609 * 3 2 1 6 6 H 1.48500 * 109.47039 * 154.97652 * 3 2 1 7 7 C 1.39927 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99859 * 146.38073 * 7 2 1 9 9 C 1.41208 * 119.99862 * 326.37332 * 7 2 1 10 10 C 1.40826 * 120.18039 * 156.76173 * 9 7 2 11 11 C 1.36440 * 119.81536 * 180.02562 * 10 9 7 12 12 C 1.39308 * 120.18126 * 359.97438 * 11 10 9 13 13 O 1.35700 * 119.81495 * 179.97438 * 12 11 10 14 14 C 1.34743 * 117.00604 * 75.91960 * 13 12 11 15 15 O 1.21482 * 119.99470 * 355.19199 * 14 13 12 16 16 C 1.47691 * 119.99886 * 175.19370 * 14 13 12 17 17 C 1.39622 * 120.57145 * 0.02562 * 16 14 13 18 18 N 1.31661 * 120.55695 * 179.72686 * 17 16 14 19 19 C 1.31961 * 121.88619 * 0.27219 * 18 17 16 20 20 C 1.38319 * 121.09562 * 0.02562 * 19 18 17 21 21 C 1.38384 * 119.31454 * 359.97438 * 20 19 18 22 22 C 1.50698 * 120.86081 * 180.02562 * 21 20 19 23 23 F 1.39902 * 109.46944 * 359.97438 * 22 21 20 24 24 F 1.39897 * 109.47221 * 119.99921 * 22 21 20 25 25 F 1.39902 * 109.46998 * 240.00103 * 22 21 20 26 26 C 1.39309 * 120.36594 * 0.25398 * 12 11 10 27 27 C 1.36433 * 120.18749 * 359.48710 * 26 12 11 28 28 H 0.96999 * 119.99382 * 0.02562 * 1 2 3 29 29 H 1.08010 * 120.09357 * 0.02562 * 10 9 7 30 30 H 1.08002 * 119.91263 * 179.97438 * 11 10 9 31 31 H 1.07995 * 119.72098 * 0.02562 * 17 16 14 32 32 H 1.07993 * 119.45179 * 179.97438 * 19 18 17 33 33 H 1.08001 * 120.34632 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.90465 * 179.74585 * 26 12 11 35 35 H 1.08001 * 120.09706 * 180.25298 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3849 2.1070 -1.3948 5 1 1.4967 2.6200 0.8026 6 1 3.5889 1.4120 0.5922 7 6 2.0082 -1.2118 0.0005 8 1 2.9527 -1.2903 -0.5173 9 6 1.4794 -2.3321 0.6783 10 6 1.8715 -3.6332 0.3087 11 6 1.3554 -4.7103 0.9683 12 6 0.4434 -4.5257 2.0050 13 8 -0.0656 -5.6023 2.6556 14 6 0.7402 -6.2185 3.5425 15 8 1.8943 -5.8598 3.6658 16 6 0.2202 -7.3299 4.3645 17 6 -1.1040 -7.7521 4.2320 18 7 -1.5657 -8.7464 4.9611 19 6 -0.8095 -9.3755 5.8407 20 6 0.5112 -9.0136 6.0359 21 6 1.0456 -7.9744 5.2946 22 6 2.4802 -7.5515 5.4786 23 9 3.0810 -8.3529 6.4554 24 9 3.1677 -7.6957 4.2688 25 9 2.5236 -6.2129 5.8830 26 6 0.0466 -3.2422 2.3736 27 6 0.5572 -2.1542 1.7278 28 1 -0.4849 0.8401 -0.0004 29 1 2.5789 -3.7780 -0.4946 30 1 1.6548 -5.7088 0.6859 31 1 -1.7537 -7.2621 3.5220 32 1 -1.2289 -10.1859 6.4183 33 1 1.1190 -9.5365 6.7594 34 1 -0.6640 -3.1078 3.1757 35 1 0.2517 -1.1597 2.0175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000077868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:56 Heat of formation + Delta-G solvation = -177.195612 kcal Electronic energy + Delta-G solvation = -28412.445976 eV Core-core repulsion = 23732.490224 eV Total energy + Delta-G solvation = -4679.955752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.071 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.25112 -48.79332 -48.67515 -42.28332 -41.16151 -39.26201 -37.76877 -35.50432 -34.62497 -33.09778 -31.69554 -31.28589 -28.35502 -27.23695 -25.92917 -24.22755 -23.43340 -23.02144 -21.96219 -20.06141 -19.61758 -19.56362 -19.43842 -19.16955 -18.42704 -17.48339 -17.28981 -17.04440 -16.54313 -16.07412 -15.89758 -15.76583 -15.49948 -15.37189 -15.19127 -15.09440 -14.89430 -14.78464 -14.75840 -14.50880 -14.12907 -13.87446 -13.60947 -13.50515 -13.36598 -13.03241 -12.63466 -12.57019 -12.31588 -11.95423 -11.83205 -11.57050 -11.22856 -10.94113 -10.89268 -10.56515 -9.66771 -9.47300 -8.91864 -6.41985 -0.96405 -0.37635 0.54778 0.99948 1.29678 1.32060 1.36923 1.41324 1.53526 1.82032 2.14302 2.37475 2.48160 2.53627 2.81631 3.14088 3.22706 3.43017 3.49456 3.56601 3.72560 4.05084 4.21652 4.24687 4.25968 4.48039 4.65180 4.82484 4.96934 5.06596 5.12506 5.22788 5.33061 5.49432 5.75768 5.88001 5.91214 6.12662 6.41997 6.50462 6.68526 6.73389 6.98050 8.07063 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.020807 B = 0.002955 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.406852 B = 9474.221829 C =10179.525858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.052 3.948 3 Si 0.975 3.025 4 H -0.255 1.255 5 H -0.261 1.261 6 H -0.260 1.260 7 C -0.488 4.488 8 H 0.086 0.914 9 C 0.095 3.905 10 C -0.241 4.241 11 C -0.070 4.070 12 C -0.090 4.090 13 O -0.264 6.264 14 C 0.474 3.526 15 O -0.506 6.506 16 C -0.147 4.147 17 C 0.169 3.831 18 N -0.477 5.477 19 C 0.154 3.846 20 C -0.120 4.120 21 C -0.096 4.096 22 C 0.509 3.491 23 F -0.166 7.166 24 F -0.177 7.177 25 F -0.178 7.178 26 C -0.080 4.080 27 C -0.195 4.195 28 H 0.300 0.700 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.190 0.810 32 H 0.227 0.773 33 H 0.195 0.805 34 H 0.115 0.885 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.549 -15.657 12.647 20.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.170 4.170 3 Si 0.794 3.206 4 H -0.179 1.179 5 H -0.185 1.185 6 H -0.184 1.184 7 C -0.514 4.514 8 H 0.104 0.896 9 C 0.092 3.908 10 C -0.260 4.260 11 C -0.089 4.089 12 C -0.132 4.132 13 O -0.178 6.178 14 C 0.319 3.681 15 O -0.394 6.394 16 C -0.151 4.151 17 C 0.013 3.987 18 N -0.185 5.185 19 C -0.004 4.004 20 C -0.139 4.139 21 C -0.106 4.106 22 C 0.455 3.545 23 F -0.147 7.147 24 F -0.158 7.158 25 F -0.160 7.160 26 C -0.099 4.099 27 C -0.214 4.214 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.207 0.793 32 H 0.243 0.757 33 H 0.212 0.788 34 H 0.133 0.867 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.268 -15.648 12.513 20.300 hybrid contribution 1.693 1.371 -0.289 2.197 sum -1.575 -14.277 12.224 18.861 Atomic orbital electron populations 1.69923 1.09623 1.32155 1.28924 1.26852 0.95084 1.04807 0.90258 0.85309 0.79631 0.75661 0.79966 1.17935 1.18470 1.18369 1.19876 1.06492 0.95217 1.29830 0.89581 1.17968 0.89745 0.92739 0.90319 1.20707 1.08137 0.92247 1.04901 1.20556 0.95026 0.98113 0.95160 1.17928 1.10091 0.84400 1.00776 1.84612 1.43191 1.40542 1.49463 1.22122 0.84766 0.82480 0.78722 1.90896 1.19182 1.64092 1.65217 1.19964 0.97874 0.97822 0.99440 1.23473 0.90228 0.90528 0.94514 1.67984 1.38147 1.06631 1.05743 1.24071 0.88694 0.96376 0.91234 1.22539 0.98434 0.94093 0.98864 1.20693 0.92048 0.99157 0.98686 1.18102 0.87083 0.75115 0.74190 1.93179 1.85439 1.73172 1.62932 1.93230 1.81645 1.95323 1.45608 1.93234 1.96853 1.35431 1.90444 1.20529 0.99085 0.91133 0.99161 1.20640 1.04115 0.96813 0.99828 0.88925 0.87446 0.87551 0.79350 0.75653 0.78804 0.86662 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.80 11.96 21.83 0.26 -38.54 16 2 C 0.05 2.51 4.72 85.25 0.40 2.91 16 3 Si 0.98 36.00 29.67 68.60 2.04 38.04 16 4 H -0.26 -8.88 7.11 99.48 0.71 -8.18 16 5 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.49 -25.72 8.93 23.41 0.21 -25.51 16 8 H 0.09 4.38 8.02 -2.91 -0.02 4.35 16 9 C 0.10 5.18 5.56 -21.28 -0.12 5.06 16 10 C -0.24 -12.37 9.74 22.48 0.22 -12.15 16 11 C -0.07 -3.40 9.44 22.11 0.21 -3.19 16 12 C -0.09 -4.30 5.20 22.79 0.12 -4.18 16 13 O -0.26 -10.75 9.29 2.25 0.02 -10.73 16 14 C 0.47 18.02 7.61 70.32 0.54 18.55 16 15 O -0.51 -22.48 11.06 19.89 0.22 -22.26 16 16 C -0.15 -4.11 5.87 -20.00 -0.12 -4.22 16 17 C 0.17 3.74 10.79 85.05 0.92 4.66 16 18 N -0.48 -8.42 10.35 -194.71 -2.01 -10.43 16 19 C 0.15 1.63 11.17 84.69 0.95 2.57 16 20 C -0.12 -1.57 9.49 22.32 0.21 -1.36 16 21 C -0.10 -2.29 5.43 -19.39 -0.11 -2.39 16 22 C 0.51 14.57 2.78 71.24 0.20 14.77 16 23 F -0.17 -3.72 16.08 44.97 0.72 -2.99 16 24 F -0.18 -6.05 15.10 44.97 0.68 -5.37 16 25 F -0.18 -6.20 15.18 44.97 0.68 -5.51 16 26 C -0.08 -3.92 9.92 22.11 0.22 -3.70 16 27 C -0.19 -10.28 8.76 22.48 0.20 -10.09 16 28 H 0.30 13.05 8.30 -92.71 -0.77 12.28 16 29 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 30 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 31 H 0.19 3.90 7.62 -2.91 -0.02 3.88 16 32 H 0.23 0.09 8.06 -2.91 -0.02 0.06 16 33 H 0.19 1.18 7.26 -2.91 -0.02 1.16 16 34 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 35 H 0.10 5.38 6.66 -2.91 -0.02 5.37 16 Total: -1.00 -67.56 325.51 7.82 -59.74 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 1.17 Total: 16.34 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 4.04 Total: -18.29 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -1.75 Total: -48.97 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: 0.24 Total: -32.98 kcal Atomic # 9 Polarization: -15.96 SS G_CDS: 2.08 Total: -13.87 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.04 Total: 38.04 kcal Total: -67.56 7.82 -59.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000077868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.458 kcal (2) G-P(sol) polarization free energy of solvation -67.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds