Wall clock time and date at job start Tue Mar 31 2020 05:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86804 * 119.99673 * 2 1 4 4 H 1.48507 * 109.47015 * 269.99714 * 3 2 1 5 5 H 1.48501 * 109.47103 * 29.99608 * 3 2 1 6 6 H 1.48499 * 109.47332 * 149.99963 * 3 2 1 7 7 C 1.38656 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99714 * 190.87515 * 7 2 1 9 9 N 1.36875 * 120.00385 * 11.14331 * 7 2 1 10 10 N 1.38896 * 118.55396 * 22.56902 * 9 7 2 11 11 C 1.28769 * 125.10324 * 202.80181 * 10 9 7 12 12 C 1.46938 * 118.60148 * 179.85542 * 11 10 9 13 13 C 1.44511 * 123.48934 * 180.22248 * 12 11 10 14 14 C 1.32901 * 113.05771 * 180.02562 * 13 12 11 15 15 Cl 1.73600 * 124.69400 * 179.97438 * 14 13 12 16 16 S 1.75493 * 110.61329 * 359.97438 * 14 13 12 17 17 C 1.36255 * 123.48484 * 359.93367 * 12 11 10 18 18 Cl 1.73597 * 124.59115 * 359.97438 * 17 12 11 19 19 C 1.50341 * 122.85165 * 0.08782 * 11 10 9 20 20 S 1.81154 * 109.30636 * 322.77731 * 19 11 10 21 21 C 1.34375 * 118.56613 * 202.83969 * 9 7 2 22 22 O 1.21611 * 120.04832 * 359.60143 * 21 9 7 23 23 H 0.96997 * 120.00285 * 0.02562 * 1 2 3 24 24 H 1.08005 * 123.46808 * 0.02562 * 13 12 11 25 25 H 1.08988 * 109.50321 * 202.82185 * 19 11 10 26 26 H 1.09007 * 109.52195 * 82.73902 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4404 0.7000 7 6 2.0091 -1.2008 0.0005 8 1 3.0746 -1.2090 0.1770 9 7 1.3442 -2.3751 -0.2280 10 7 0.1335 -2.3313 -0.9074 11 6 -0.7859 -3.2304 -0.8410 12 6 -2.0164 -3.0370 -1.6203 13 6 -3.1159 -3.9748 -1.6203 14 6 -4.1242 -3.5949 -2.3984 15 17 -5.5929 -4.4931 -2.6217 16 16 -3.7653 -2.0595 -3.1689 17 6 -2.2413 -1.9521 -2.4134 18 17 -1.1253 -0.6399 -2.6280 19 6 -0.6572 -4.4676 0.0034 20 16 1.0569 -5.0514 -0.0468 21 6 1.8885 -3.5193 0.2195 22 8 2.9531 -3.4982 0.8070 23 1 -0.4850 0.8400 -0.0004 24 1 -3.1181 -4.8902 -1.0470 25 1 -1.3173 -5.2432 -0.3845 26 1 -0.9328 -4.2365 1.0325 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000341043.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:58 Heat of formation + Delta-G solvation = 55.702729 kcal Electronic energy + Delta-G solvation = -19641.418342 eV Core-core repulsion = 16220.111077 eV Total energy + Delta-G solvation = -3421.307266 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 335.930 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.10007 -38.07749 -36.90344 -36.06719 -35.68095 -33.48029 -31.49807 -29.16645 -28.20148 -25.76800 -24.12421 -22.35993 -21.01374 -19.20928 -17.95410 -17.43595 -16.98344 -15.79211 -15.50659 -15.05404 -14.76263 -14.27982 -14.12517 -14.00788 -13.65977 -13.35131 -13.01394 -12.49469 -12.35447 -11.87481 -11.70994 -11.47662 -11.20087 -11.06768 -10.79306 -10.63180 -10.57324 -10.51659 -10.18230 -9.57847 -9.41193 -8.68966 -8.55889 -8.30042 -7.81018 -7.54862 -6.53482 -4.19952 0.72297 0.86484 1.57110 1.72509 1.93953 2.02034 2.31802 2.73631 2.96229 3.13075 3.13800 3.18526 3.54357 3.77947 4.08474 4.76788 5.00141 5.13201 5.23935 5.35525 5.58311 5.70129 6.01925 6.17242 6.65748 7.28167 7.83592 8.11956 8.71659 9.05630 9.44783 10.46600 Molecular weight = 335.93amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.005468 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.610291 B = 5119.285456 C = 6883.935176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.059 3.941 3 Si 0.924 3.076 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.320 4.320 8 H 0.117 0.883 9 N -0.249 5.249 10 N -0.135 5.135 11 C 0.083 3.917 12 C -0.023 4.023 13 C -0.087 4.087 14 C -0.165 4.165 15 Cl -0.017 7.017 16 S 0.226 5.774 17 C -0.146 4.146 18 Cl 0.056 6.944 19 C -0.076 4.076 20 S -0.203 6.203 21 C 0.443 3.557 22 O -0.511 6.511 23 H 0.273 0.727 24 H 0.160 0.840 25 H 0.119 0.881 26 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.496 -3.848 -6.453 14.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.153 4.153 3 Si 0.749 3.251 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.450 4.450 8 H 0.134 0.866 9 N -0.057 5.057 10 N 0.055 4.945 11 C -0.106 4.106 12 C -0.040 4.040 13 C -0.120 4.120 14 C -0.308 4.308 15 Cl 0.011 6.989 16 S 0.487 5.513 17 C -0.295 4.295 18 Cl 0.085 6.915 19 C -0.227 4.227 20 S 0.021 5.979 21 C 0.124 3.876 22 O -0.390 6.390 23 H 0.084 0.916 24 H 0.177 0.823 25 H 0.137 0.863 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.071 -3.098 -7.588 14.590 hybrid contribution 0.517 0.256 1.600 1.701 sum -11.553 -2.842 -5.988 13.320 Atomic orbital electron populations 1.70002 1.05719 1.27978 1.40815 1.25318 0.95511 0.99619 0.94876 0.85968 0.79820 0.80465 0.78852 1.19831 1.20410 1.18886 1.19633 0.93628 0.80790 1.50998 0.86550 1.44751 1.12905 1.06337 1.41691 1.73944 0.92297 1.19244 1.09006 1.21439 0.94083 0.93367 1.01675 1.18110 0.93336 0.93448 0.99130 1.21045 0.90787 1.00586 0.99613 1.24828 0.94989 1.01353 1.09680 1.98358 1.31568 1.72703 1.96269 1.83056 1.08478 1.14777 1.45011 1.25203 0.99764 0.98091 1.06453 1.98469 1.56881 1.41334 1.94832 1.22618 0.96217 0.99952 1.03933 1.86553 1.02636 1.16554 1.92115 1.22220 0.92110 0.87170 0.86057 1.90655 1.23533 1.81170 1.43635 0.91636 0.82299 0.86323 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.14 10.02 55.48 0.56 -19.59 15 2 C 0.06 1.47 5.34 -17.51 -0.09 1.38 15 3 Si 0.92 19.51 29.56 -169.99 -5.03 14.48 15 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 7 C -0.32 -8.58 9.27 -15.15 -0.14 -8.72 15 8 H 0.12 3.20 7.30 -52.48 -0.38 2.82 15 9 N -0.25 -6.46 3.54 -14.15 -0.05 -6.51 15 10 N -0.13 -3.14 6.15 34.77 0.21 -2.93 15 11 C 0.08 1.64 6.71 -80.53 -0.54 1.10 15 12 C -0.02 -0.39 5.97 -104.62 -0.62 -1.01 15 13 C -0.09 -1.13 9.60 -38.96 -0.37 -1.50 15 14 C -0.17 -2.00 7.01 28.89 0.20 -1.80 15 15 Cl -0.02 -0.18 29.27 -51.86 -1.52 -1.70 15 16 S 0.23 2.84 23.02 -107.50 -2.47 0.37 15 17 C -0.15 -2.42 6.87 30.02 0.21 -2.22 15 18 Cl 0.06 1.05 25.05 -51.86 -1.30 -0.25 15 19 C -0.08 -1.29 6.21 35.83 0.22 -1.07 15 20 S -0.20 -4.12 22.61 -107.50 -2.43 -6.55 15 21 C 0.44 11.31 7.76 53.88 0.42 11.72 15 22 O -0.51 -14.32 16.70 5.27 0.09 -14.24 15 23 H 0.27 6.41 8.31 -40.82 -0.34 6.07 15 24 H 0.16 1.66 6.84 -52.48 -0.36 1.30 15 25 H 0.12 1.54 6.37 -51.93 -0.33 1.21 15 26 H 0.10 1.69 8.14 -51.92 -0.42 1.27 15 LS Contribution 288.95 15.07 4.35 4.35 Total: -1.00 -28.93 288.95 -8.94 -37.87 By element: Atomic # 1 Polarization: -2.57 SS G_CDS: -0.63 Total: -3.20 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -0.72 Total: -2.12 kcal Atomic # 7 Polarization: -29.75 SS G_CDS: 0.72 Total: -29.03 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -4.91 Total: -6.18 kcal Atomic # 17 Polarization: 0.88 SS G_CDS: -2.82 Total: -1.94 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.93 -8.94 -37.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000341043.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.569 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds