Wall clock time and date at job start Tue Mar 31 2020 05:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86804 * 119.99673 * 2 1 4 4 H 1.48507 * 109.47015 * 269.99714 * 3 2 1 5 5 H 1.48501 * 109.47103 * 29.99608 * 3 2 1 6 6 H 1.48499 * 109.47332 * 149.99963 * 3 2 1 7 7 C 1.38656 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99714 * 190.87515 * 7 2 1 9 9 N 1.36875 * 120.00385 * 11.14331 * 7 2 1 10 10 N 1.38896 * 118.55396 * 22.56902 * 9 7 2 11 11 C 1.28769 * 125.10324 * 202.80181 * 10 9 7 12 12 C 1.46938 * 118.60148 * 179.85542 * 11 10 9 13 13 C 1.44511 * 123.48934 * 180.22248 * 12 11 10 14 14 C 1.32901 * 113.05771 * 180.02562 * 13 12 11 15 15 Cl 1.73600 * 124.69400 * 179.97438 * 14 13 12 16 16 S 1.75493 * 110.61329 * 359.97438 * 14 13 12 17 17 C 1.36255 * 123.48484 * 359.93367 * 12 11 10 18 18 Cl 1.73597 * 124.59115 * 359.97438 * 17 12 11 19 19 C 1.50341 * 122.85165 * 0.08782 * 11 10 9 20 20 S 1.81154 * 109.30636 * 322.77731 * 19 11 10 21 21 C 1.34375 * 118.56613 * 202.83969 * 9 7 2 22 22 O 1.21611 * 120.04832 * 359.60143 * 21 9 7 23 23 H 0.96997 * 120.00285 * 0.02562 * 1 2 3 24 24 H 1.08005 * 123.46808 * 0.02562 * 13 12 11 25 25 H 1.08988 * 109.50321 * 202.82185 * 19 11 10 26 26 H 1.09007 * 109.52195 * 82.73902 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4404 0.7000 7 6 2.0091 -1.2008 0.0005 8 1 3.0746 -1.2090 0.1770 9 7 1.3442 -2.3751 -0.2280 10 7 0.1335 -2.3313 -0.9074 11 6 -0.7859 -3.2304 -0.8410 12 6 -2.0164 -3.0370 -1.6203 13 6 -3.1159 -3.9748 -1.6203 14 6 -4.1242 -3.5949 -2.3984 15 17 -5.5929 -4.4931 -2.6217 16 16 -3.7653 -2.0595 -3.1689 17 6 -2.2413 -1.9521 -2.4134 18 17 -1.1253 -0.6399 -2.6280 19 6 -0.6572 -4.4676 0.0034 20 16 1.0569 -5.0514 -0.0468 21 6 1.8885 -3.5193 0.2195 22 8 2.9531 -3.4982 0.8070 23 1 -0.4850 0.8400 -0.0004 24 1 -3.1181 -4.8902 -1.0470 25 1 -1.3173 -5.2432 -0.3845 26 1 -0.9328 -4.2365 1.0325 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000341043.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:58 Heat of formation + Delta-G solvation = 38.836668 kcal Electronic energy + Delta-G solvation = -19642.149710 eV Core-core repulsion = 16220.111077 eV Total energy + Delta-G solvation = -3422.038633 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 335.930 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80112 -39.45207 -38.00115 -37.58028 -37.04434 -35.18875 -33.25512 -30.48156 -29.66488 -27.62873 -25.44638 -23.98250 -22.52395 -20.55603 -19.29617 -19.07807 -18.51599 -17.51640 -17.08540 -16.66942 -16.28903 -15.89953 -15.54344 -15.32703 -15.03810 -14.67907 -14.26709 -13.91086 -13.71080 -13.53290 -13.28521 -12.95503 -12.80172 -12.58457 -12.22961 -12.12960 -11.91164 -11.76695 -11.70704 -11.20017 -11.15647 -10.35042 -9.93567 -9.64609 -9.40167 -9.07914 -8.38772 -6.15372 -0.51705 -0.22239 0.05546 0.38565 0.59605 0.88307 0.99551 1.24557 1.37971 1.43846 1.49698 1.55552 1.95231 2.12378 2.33816 3.10399 3.30278 3.89910 4.01521 4.07425 4.30088 4.58928 4.73335 4.88695 5.09897 5.33448 5.95758 6.27895 6.84063 7.19592 7.70629 8.58753 Molecular weight = 335.93amu Principal moments of inertia in cm(-1) A = 0.013745 B = 0.005468 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.610291 B = 5119.285456 C = 6883.935176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.267 1.267 5 H -0.265 1.265 6 H -0.272 1.272 7 C -0.359 4.359 8 H 0.090 0.910 9 N -0.262 5.262 10 N -0.177 5.177 11 C 0.109 3.891 12 C -0.048 4.048 13 C -0.082 4.082 14 C -0.162 4.162 15 Cl 0.009 6.991 16 S 0.289 5.711 17 C -0.165 4.165 18 Cl 0.024 6.976 19 C -0.079 4.079 20 S -0.167 6.167 21 C 0.405 3.595 22 O -0.571 6.571 23 H 0.277 0.723 24 H 0.191 0.809 25 H 0.173 0.827 26 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.272 -4.802 -7.457 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.190 1.190 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.108 0.892 9 N -0.068 5.068 10 N 0.015 4.985 11 C -0.082 4.082 12 C -0.066 4.066 13 C -0.114 4.114 14 C -0.305 4.305 15 Cl 0.038 6.962 16 S 0.551 5.449 17 C -0.314 4.314 18 Cl 0.053 6.947 19 C -0.230 4.230 20 S 0.058 5.942 21 C 0.088 3.912 22 O -0.456 6.456 23 H 0.087 0.913 24 H 0.208 0.792 25 H 0.190 0.810 26 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.902 -4.041 -8.624 18.536 hybrid contribution 1.252 0.439 1.747 2.194 sum -14.651 -3.602 -6.877 16.580 Atomic orbital electron populations 1.70064 1.06289 1.28699 1.39903 1.25931 0.96353 1.01521 0.93971 0.85147 0.78504 0.77084 0.78987 1.19234 1.18959 1.19638 1.19512 0.93134 0.82474 1.53772 0.89246 1.44782 1.13863 1.06258 1.41911 1.74001 0.92201 1.21055 1.11220 1.22267 0.93727 0.92667 0.99539 1.18318 0.93463 0.95051 0.99782 1.21137 0.89303 1.00863 1.00085 1.24954 0.95709 1.01211 1.08670 1.98384 1.29819 1.71960 1.96064 1.82941 1.04729 1.14350 1.42887 1.25640 1.01197 0.97410 1.07114 1.98462 1.58434 1.42710 1.95061 1.22940 0.95035 1.00501 1.04494 1.86223 1.03898 1.12337 1.91698 1.22856 0.92427 0.89084 0.86864 1.90591 1.25520 1.83012 1.46461 0.91310 0.79193 0.80982 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.11 10.02 21.62 0.22 -40.90 15 2 C 0.03 1.74 5.34 84.83 0.45 2.19 15 3 Si 0.98 41.09 29.56 68.60 2.03 43.12 15 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 15 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 7 C -0.36 -20.45 9.27 84.01 0.78 -19.67 15 8 H 0.09 5.39 7.30 -2.91 -0.02 5.37 15 9 N -0.26 -14.21 3.54 -317.17 -1.12 -15.33 15 10 N -0.18 -8.37 6.15 -43.92 -0.27 -8.64 15 11 C 0.11 4.12 6.71 45.18 0.30 4.42 15 12 C -0.05 -1.47 5.97 -19.86 -0.12 -1.58 15 13 C -0.08 -1.74 9.60 22.69 0.22 -1.52 15 14 C -0.16 -3.17 7.01 66.64 0.47 -2.70 15 15 Cl 0.01 0.15 29.27 -2.72 -0.08 0.07 15 16 S 0.29 6.25 23.02 -56.49 -1.30 4.95 15 17 C -0.16 -5.12 6.87 67.36 0.46 -4.66 15 18 Cl 0.02 0.91 25.05 -2.72 -0.07 0.84 15 19 C -0.08 -2.47 6.21 71.12 0.44 -2.03 15 20 S -0.17 -6.67 22.61 -56.49 -1.28 -7.95 15 21 C 0.40 21.67 7.76 129.85 1.01 22.68 15 22 O -0.57 -34.40 16.70 -4.07 -0.07 -34.47 15 23 H 0.28 13.02 8.31 -92.71 -0.77 12.25 15 24 H 0.19 2.77 6.84 -2.91 -0.02 2.75 15 25 H 0.17 3.54 6.37 -2.40 -0.02 3.53 15 26 H 0.11 3.44 8.14 -2.39 -0.02 3.42 15 Total: -1.00 -68.00 288.95 3.35 -64.65 By element: Atomic # 1 Polarization: -4.75 SS G_CDS: 1.27 Total: -3.47 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 4.01 Total: -2.88 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: -1.18 Total: -64.87 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.07 Total: -34.47 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.58 Total: -3.00 kcal Atomic # 17 Polarization: 1.06 SS G_CDS: -0.15 Total: 0.91 kcal Total: -68.00 3.35 -64.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000341043.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.490 kcal (2) G-P(sol) polarization free energy of solvation -68.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds