Wall clock time and date at job start Tue Mar 31 2020 05:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86799 * 120.00063 * 2 1 4 4 H 1.48502 * 109.47053 * 270.00014 * 3 2 1 5 5 H 1.48493 * 109.47106 * 29.99924 * 3 2 1 6 6 H 1.48494 * 109.47191 * 150.00086 * 3 2 1 7 7 C 1.39867 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99628 * 195.22115 * 7 2 1 9 9 C 1.41136 * 120.00338 * 15.22333 * 7 2 1 10 10 C 1.40884 * 120.15772 * 205.13001 * 9 7 2 11 11 C 1.36337 * 119.83794 * 180.02562 * 10 9 7 12 12 C 1.39561 * 120.15939 * 359.97438 * 11 10 9 13 13 N 1.38859 * 119.84266 * 179.97438 * 12 11 10 14 14 S 1.65603 * 119.99991 * 74.06839 * 13 12 11 15 15 O 1.42091 * 106.40511 * 309.32864 * 14 13 12 16 16 O 1.42096 * 106.40460 * 176.40150 * 14 13 12 17 17 C 1.76207 * 107.21538 * 62.86373 * 14 13 12 18 18 C 1.38242 * 119.98865 * 84.47389 * 17 14 13 19 19 C 1.38211 * 120.01483 * 180.27768 * 18 17 14 20 20 C 1.38351 * 119.98656 * 359.46870 * 19 18 17 21 21 Cl 1.73596 * 120.01437 * 180.23565 * 20 19 18 22 22 C 1.38352 * 119.97137 * 0.55264 * 20 19 18 23 23 C 1.38221 * 119.98827 * 359.70154 * 22 20 19 24 24 C 1.39562 * 120.31844 * 0.25982 * 12 11 10 25 25 C 1.36341 * 120.15786 * 359.48270 * 24 12 11 26 26 H 0.96999 * 120.00153 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.07912 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.91812 * 179.97438 * 11 10 9 29 29 H 0.96994 * 120.00116 * 254.07579 * 13 12 11 30 30 H 1.08005 * 119.99176 * 0.02562 * 18 17 14 31 31 H 1.08002 * 120.00505 * 179.70931 * 19 18 17 32 32 H 1.08004 * 120.01012 * 179.68129 * 22 20 19 33 33 H 1.08002 * 119.99042 * 179.97438 * 23 22 20 34 34 H 1.08004 * 119.91979 * 179.72200 * 24 12 11 35 35 H 1.08001 * 120.07739 * 180.23446 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4405 2.6526 0.7000 6 1 3.5405 1.4402 0.7000 7 6 2.0083 -1.2113 -0.0005 8 1 3.0599 -1.2278 0.2450 9 6 1.3398 -2.4120 -0.3220 10 6 1.8253 -3.6434 0.1605 11 6 1.1747 -4.7994 -0.1545 12 6 0.0302 -4.7648 -0.9524 13 7 -0.6269 -5.9462 -1.2696 14 16 -1.5358 -6.7218 -0.1229 15 8 -0.7102 -6.8462 1.0268 16 8 -2.1372 -7.8336 -0.7720 17 6 -2.8497 -5.6358 0.3233 18 6 -4.0058 -5.6022 -0.4339 19 6 -5.0344 -4.7465 -0.0878 20 6 -4.9114 -3.9313 1.0233 21 17 -6.2054 -2.8606 1.4623 22 6 -3.7540 -3.9650 1.7806 23 6 -2.7239 -4.8174 1.4303 24 6 -0.4537 -3.5491 -1.4379 25 6 0.1837 -2.3848 -1.1266 26 1 -0.4850 0.8400 -0.0004 27 1 2.7111 -3.6716 0.7777 28 1 1.5460 -5.7442 0.2143 29 1 -0.5536 -6.3173 -2.1628 30 1 -4.1035 -6.2419 -1.2987 31 1 -5.9356 -4.7169 -0.6822 32 1 -3.6553 -3.3252 2.6451 33 1 -1.8202 -4.8435 2.0212 34 1 -1.3374 -3.5303 -2.0585 35 1 -0.1941 -1.4444 -1.4999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000378885.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:29 Heat of formation + Delta-G solvation = -37.763146 kcal Electronic energy + Delta-G solvation = -23972.400676 eV Core-core repulsion = 20280.667932 eV Total energy + Delta-G solvation = -3691.732745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.033 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.21845 -38.06845 -36.83556 -36.61827 -35.51264 -34.85514 -32.90244 -31.17606 -30.98520 -29.66378 -28.81369 -24.83508 -23.18042 -22.98542 -21.22477 -20.87317 -19.23364 -18.00772 -17.49583 -17.25727 -16.73493 -16.22371 -15.68011 -15.39553 -14.67476 -14.46718 -14.08486 -13.76163 -13.63850 -13.61834 -12.91889 -12.75496 -12.43198 -12.17937 -11.81094 -11.78821 -11.76397 -11.72726 -11.62735 -11.41504 -11.27999 -10.96604 -10.93030 -10.86464 -10.70031 -10.00173 -9.84763 -9.36096 -9.14223 -9.12734 -8.98418 -7.72349 -7.43687 -6.95654 -4.54790 0.54604 0.84552 1.21869 1.92102 2.53033 2.96428 2.98766 3.00388 3.03904 3.22178 3.54607 3.78116 4.06874 4.40423 4.51378 4.75610 4.84503 5.20111 5.38459 5.47788 5.48999 5.81576 5.87625 6.05099 6.08855 6.13707 6.22134 6.30843 6.65111 6.82692 6.87991 7.01406 7.15703 7.29729 7.44619 7.85199 7.89485 7.95890 8.10174 8.43750 8.68007 8.78182 9.96018 Molecular weight = 337.03amu Principal moments of inertia in cm(-1) A = 0.009940 B = 0.004697 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.357968 B = 5959.664287 C = 8192.203030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.445 4.445 8 H 0.082 0.918 9 C 0.119 3.881 10 C -0.223 4.223 11 C -0.062 4.062 12 C -0.039 4.039 13 N -1.028 6.028 14 S 2.676 3.324 15 O -0.953 6.953 16 O -0.979 6.979 17 C -0.661 4.661 18 C -0.011 4.011 19 C -0.138 4.138 20 C 0.016 3.984 21 Cl -0.066 7.066 22 C -0.128 4.128 23 C 0.009 3.991 24 C -0.083 4.083 25 C -0.165 4.165 26 H 0.284 0.716 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.408 0.592 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.090 0.910 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 -4.278 -0.472 9.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.474 4.474 8 H 0.100 0.900 9 C 0.115 3.885 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.135 4.135 13 N -0.782 5.782 14 S 2.768 3.232 15 O -0.943 6.943 16 O -0.969 6.969 17 C -0.747 4.747 18 C -0.030 4.030 19 C -0.157 4.157 20 C -0.011 4.011 21 Cl -0.037 7.037 22 C -0.148 4.148 23 C -0.011 4.011 24 C -0.105 4.105 25 C -0.185 4.185 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.245 0.755 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.170 0.830 34 H 0.108 0.892 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.504 -4.850 0.110 9.791 hybrid contribution -0.333 1.541 -0.345 1.614 sum -8.837 -3.309 -0.235 9.439 Atomic orbital electron populations 1.69834 1.07606 1.29643 1.33525 1.26000 0.94849 1.01659 0.92143 0.86224 0.80492 0.80115 0.79488 1.19117 1.20157 1.18417 1.19712 0.97485 0.90953 1.39251 0.89955 1.17759 0.90990 0.92169 0.87545 1.20673 1.03703 0.92593 1.07421 1.20609 0.93356 0.97570 0.96827 1.16599 0.99409 0.83521 1.13998 1.52154 1.62362 1.36938 1.26779 1.02950 0.73246 0.73047 0.73960 1.93562 1.65699 1.85156 1.49916 1.93528 1.78101 1.49574 1.75734 1.31149 1.17210 1.19861 1.06472 1.20803 0.90698 0.94597 0.96898 1.21089 1.00590 0.97193 0.96875 1.21224 0.90263 0.93403 0.96233 1.98381 1.48940 1.63949 1.92456 1.21210 0.92178 1.00359 1.01010 1.20985 0.97887 0.89420 0.92772 1.20620 0.98256 0.92372 0.99203 1.21019 0.99117 0.96704 1.01686 0.90524 0.88353 0.88145 0.75540 0.83825 0.84327 0.84025 0.83040 0.89154 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.51 10.83 55.54 0.60 -17.91 16 2 C 0.07 1.68 5.19 -17.34 -0.09 1.59 16 3 Si 0.91 17.26 29.59 -169.99 -5.03 12.23 16 4 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 5 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.45 -10.80 9.04 -37.87 -0.34 -11.15 16 8 H 0.08 1.92 7.89 -52.48 -0.41 1.50 16 9 C 0.12 2.89 5.58 -106.80 -0.60 2.30 16 10 C -0.22 -5.08 9.74 -39.27 -0.38 -5.47 16 11 C -0.06 -1.33 9.18 -39.77 -0.37 -1.69 16 12 C -0.04 -0.77 5.80 -83.69 -0.49 -1.26 16 13 N -1.03 -16.98 5.65 32.51 0.18 -16.79 16 14 S 2.68 44.64 5.70 -107.50 -0.61 44.02 16 15 O -0.95 -18.42 16.08 -57.18 -0.92 -19.34 16 16 O -0.98 -17.10 17.43 -57.18 -1.00 -18.09 16 17 C -0.66 -10.39 5.85 -39.58 -0.23 -10.62 16 18 C -0.01 -0.14 9.52 -39.59 -0.38 -0.52 16 19 C -0.14 -1.76 9.83 -39.55 -0.39 -2.15 16 20 C 0.02 0.21 6.32 -39.50 -0.25 -0.04 16 21 Cl -0.07 -0.81 28.96 -51.86 -1.50 -2.31 16 22 C -0.13 -1.86 9.83 -39.55 -0.39 -2.25 16 23 C 0.01 0.14 9.53 -39.59 -0.38 -0.24 16 24 C -0.08 -1.74 9.90 -39.77 -0.39 -2.14 16 25 C -0.16 -3.88 8.63 -39.27 -0.34 -4.22 16 26 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 27 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 28 H 0.10 2.02 7.84 -52.48 -0.41 1.61 16 29 H 0.41 5.62 8.95 -34.47 -0.31 5.31 16 30 H 0.14 1.65 7.75 -52.48 -0.41 1.25 16 31 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 33 H 0.15 2.43 7.50 -52.49 -0.39 2.04 16 34 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 35 H 0.12 3.00 6.09 -52.49 -0.32 2.68 16 LS Contribution 336.06 15.07 5.06 5.06 Total: -1.00 -28.00 336.06 -11.30 -39.30 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -3.08 Total: 11.68 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: -5.01 Total: -37.85 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.79 Total: -34.71 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -1.92 Total: -37.44 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Atomic # 16 Polarization: 44.64 SS G_CDS: -0.61 Total: 44.02 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.00 -11.30 -39.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000378885.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.536 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds