Wall clock time and date at job start Tue Mar 31 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.53565 * 2 1 4 4 C 1.53210 * 109.50168 * 239.90432 * 2 1 3 5 5 C 1.52373 * 108.05222 * 288.76158 * 4 2 1 6 6 C 1.33659 * 122.15526 * 343.53103 * 5 4 2 7 7 S 1.75317 * 111.37496 * 180.02562 * 6 5 4 8 8 C 1.75611 * 92.43693 * 0.03652 * 7 6 5 9 9 N 1.33930 * 131.12109 * 179.91465 * 8 7 6 10 10 C 1.32034 * 120.95592 * 179.97438 * 9 8 7 11 11 S 1.76202 * 119.00810 * 179.97438 * 10 9 8 12 12 C 1.76203 * 99.99881 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99713 * 0.02562 * 12 11 10 14 14 C 1.38723 * 119.99883 * 179.97438 * 12 11 10 15 15 N 1.31599 * 120.00285 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99987 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46711 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47047 * 119.99995 * 16 14 12 19 19 H 1.48494 * 109.47151 * 240.00384 * 16 14 12 20 20 N 1.32841 * 121.98199 * 359.96233 * 10 9 8 21 21 C 1.32288 * 121.10172 * 0.03226 * 20 10 9 22 22 N 1.38305 * 120.48523 * 180.02562 * 21 20 10 23 23 C 1.39494 * 109.66420 * 0.17806 * 8 7 6 24 24 C 1.51819 * 123.37050 * 0.02576 * 6 5 4 25 25 O 1.43056 * 109.49751 * 120.09332 * 2 1 3 26 26 H 1.09002 * 109.47057 * 299.90542 * 1 2 3 27 27 H 1.09000 * 109.46981 * 59.90543 * 1 2 3 28 28 H 1.09000 * 109.47135 * 179.90547 * 1 2 3 29 29 H 1.08997 * 109.47014 * 180.09094 * 3 2 1 30 30 H 1.09002 * 109.47052 * 300.09599 * 3 2 1 31 31 H 1.09004 * 109.46642 * 60.09327 * 3 2 1 32 32 H 1.08996 * 109.74571 * 48.40485 * 4 2 1 33 33 H 1.09002 * 109.73977 * 169.07605 * 4 2 1 34 34 H 0.97000 * 120.00220 * 180.02562 * 15 14 12 35 35 H 0.96996 * 119.99888 * 8.45719 * 22 21 20 36 36 H 0.97002 * 119.99513 * 188.45572 * 22 21 20 37 37 H 1.09002 * 109.69111 * 104.55140 * 24 6 5 38 38 H 1.09000 * 109.68878 * 225.12873 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0414 -0.7242 -1.2495 5 6 1.7598 -2.2122 -1.0813 6 6 1.4683 -2.7512 0.1065 7 16 1.1972 -4.4783 -0.0247 8 6 1.4914 -4.4687 -1.7560 9 7 1.4770 -5.4592 -2.6573 10 6 1.7317 -5.2222 -3.9310 11 16 1.6997 -6.5637 -5.0729 12 6 2.0951 -5.7080 -6.5615 13 1 2.2709 -4.6425 -6.5415 14 6 2.1815 -6.4029 -7.7590 15 7 1.9677 -7.7012 -7.7833 16 14 2.6000 -5.4956 -9.3374 17 1 2.7906 -4.0525 -9.0430 18 1 3.8503 -6.0534 -9.9123 19 1 1.4911 -5.6593 -10.3113 20 7 2.0111 -4.0027 -4.3776 21 6 2.0467 -2.9659 -3.5567 22 7 2.3385 -1.7016 -4.0355 23 6 1.7868 -3.1713 -2.1748 24 6 1.3886 -1.9468 1.3916 25 8 2.0074 -0.6762 1.1668 26 1 -0.3633 0.5124 0.8908 27 1 -0.3633 0.5153 -0.8891 28 1 -0.3633 -1.0277 -0.0017 29 1 3.1316 1.4407 -0.0016 30 1 1.6774 1.9567 -0.8891 31 1 1.6802 1.9556 0.8909 32 1 1.5224 -0.3485 -2.1312 33 1 3.1139 -0.5614 -1.3563 34 1 2.0285 -8.1872 -8.6206 35 1 2.3979 -1.5467 -4.9911 36 1 2.4838 -0.9698 -3.4155 37 1 0.3447 -1.8026 1.6705 38 1 1.9126 -2.4747 2.1884 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002260727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:24 Heat of formation + Delta-G solvation = 11.435994 kcal Electronic energy + Delta-G solvation = -24203.410352 eV Core-core repulsion = 20683.980595 eV Total energy + Delta-G solvation = -3519.429758 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.63150 -39.59650 -35.45384 -35.05033 -33.78604 -32.79896 -31.54020 -29.74341 -28.54607 -27.41245 -25.96371 -25.24106 -24.04535 -22.78580 -21.01163 -18.89877 -18.57699 -18.04417 -17.27944 -16.86513 -16.39808 -15.82502 -15.18093 -15.04730 -14.82214 -14.74121 -14.55948 -14.21054 -13.90832 -13.84745 -13.24118 -12.89448 -12.64331 -12.29225 -12.21573 -12.07831 -11.86196 -11.66711 -11.54129 -11.29388 -11.18313 -11.04320 -10.95342 -10.57644 -10.39389 -10.05323 -9.68964 -9.46822 -9.09136 -8.96542 -8.43675 -8.31377 -7.62471 -6.86494 -6.57305 -4.26917 0.92148 1.48446 1.81976 2.16413 2.35907 2.76795 3.09729 3.15500 3.23460 3.47781 3.61642 3.97430 4.32512 4.39401 4.51167 4.58643 4.65291 4.89024 4.91772 4.98228 5.11780 5.16746 5.24601 5.30606 5.36652 5.39394 5.44468 5.48704 5.56171 5.59089 5.66734 5.80441 5.97174 6.07861 6.42639 6.46905 6.94137 7.18518 7.43924 7.51111 7.92010 8.31962 8.82579 8.94613 10.49885 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.003312 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.020696 B = 8453.072962 C = 9630.744080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.114 3.886 3 C -0.139 4.139 4 C -0.089 4.089 5 C -0.026 4.026 6 C -0.264 4.264 7 S 0.142 5.858 8 C 0.154 3.846 9 N -0.539 5.539 10 C 0.323 3.677 11 S 0.201 5.799 12 C -0.544 4.544 13 H 0.111 0.889 14 C 0.075 3.925 15 N -0.869 5.869 16 Si 0.933 3.067 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.277 1.277 20 N -0.573 5.573 21 C 0.497 3.503 22 N -0.839 5.839 23 C -0.281 4.281 24 C 0.145 3.855 25 O -0.365 6.365 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.276 0.724 35 H 0.406 0.594 36 H 0.404 0.596 37 H 0.069 0.931 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 16.160 14.341 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.074 3.926 3 C -0.196 4.196 4 C -0.129 4.129 5 C -0.040 4.040 6 C -0.382 4.382 7 S 0.399 5.601 8 C -0.104 4.104 9 N -0.266 5.266 10 C -0.050 4.050 11 S 0.448 5.552 12 C -0.693 4.693 13 H 0.129 0.871 14 C -0.135 4.135 15 N -0.503 5.503 16 Si 0.758 3.242 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.203 1.203 20 N -0.302 5.302 21 C 0.237 3.763 22 N -0.387 5.387 23 C -0.303 4.303 24 C 0.067 3.933 25 O -0.284 6.284 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.236 0.764 36 H 0.237 0.763 37 H 0.087 0.913 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.889 12.724 14.702 19.535 hybrid contribution 0.776 3.583 -2.003 4.178 sum -1.113 16.307 12.699 20.698 Atomic orbital electron populations 1.22486 0.95087 1.03466 1.02841 1.21483 0.93572 0.92489 0.85008 1.21789 1.02127 0.92922 1.02753 1.21388 1.02252 0.90535 0.98720 1.19734 0.99225 0.94420 0.90571 1.24692 1.15926 0.98162 0.99384 1.83670 1.75473 1.02241 0.98716 1.23267 0.96706 0.91377 0.99097 1.68312 1.25570 1.31837 1.00864 1.25991 0.90922 0.95465 0.92579 1.83797 1.74256 1.01029 0.96123 1.23634 1.54081 0.99712 0.91891 0.87075 1.25180 0.93656 0.95056 0.99624 1.69959 1.44843 1.06982 1.28520 0.85872 0.78214 0.79840 0.80231 1.19028 1.20300 1.20309 1.68337 1.26653 0.98697 1.36542 1.18461 0.84706 0.86742 0.86426 1.42380 1.78189 1.06942 1.11148 1.19509 1.21933 0.94757 0.94122 1.21129 0.98387 0.82043 0.91773 1.88060 1.64846 1.30987 1.44475 0.91631 0.91348 0.91291 0.91557 0.90896 0.91535 0.89599 0.89358 0.91424 0.76371 0.76294 0.91339 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 7.76 37.16 0.29 -1.31 16 2 C 0.11 1.08 1.11 -90.51 -0.10 0.98 16 3 C -0.14 -0.99 8.83 37.16 0.33 -0.66 16 4 C -0.09 -0.96 3.58 -26.94 -0.10 -1.05 16 5 C -0.03 -0.38 5.57 -102.52 -0.57 -0.95 16 6 C -0.26 -3.60 5.63 -35.36 -0.20 -3.80 16 7 S 0.14 2.18 23.19 -107.50 -2.49 -0.31 16 8 C 0.15 3.09 7.67 -16.17 -0.12 2.96 16 9 N -0.54 -12.45 10.43 -12.27 -0.13 -12.58 16 10 C 0.32 7.88 7.84 -91.04 -0.71 7.16 16 11 S 0.20 5.22 21.82 -107.50 -2.35 2.87 16 12 C -0.54 -14.80 9.24 30.91 0.29 -14.51 16 13 H 0.11 3.02 6.49 -52.48 -0.34 2.68 16 14 C 0.07 1.99 5.49 -17.47 -0.10 1.89 16 15 N -0.87 -23.95 13.22 55.49 0.73 -23.22 16 16 Si 0.93 20.41 29.55 -169.99 -5.02 15.38 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 N -0.57 -13.16 8.43 -12.27 -0.10 -13.26 16 21 C 0.50 9.47 7.88 -154.64 -1.22 8.25 16 22 N -0.84 -11.67 8.98 31.58 0.28 -11.39 16 23 C -0.28 -5.15 6.06 -105.06 -0.64 -5.78 16 24 C 0.14 1.55 6.56 36.56 0.24 1.79 16 25 O -0.36 -4.10 10.31 -35.23 -0.36 -4.46 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.72 5.75 -51.93 -0.30 0.42 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.80 6.59 -51.93 -0.34 0.46 16 33 H 0.09 0.89 8.06 -51.93 -0.42 0.47 16 34 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.41 5.26 8.95 -40.82 -0.37 4.90 16 36 H 0.40 4.33 5.18 -40.82 -0.21 4.12 16 37 H 0.07 0.63 6.90 -51.93 -0.36 0.27 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -31.58 335.56 -11.00 -42.59 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.01 Total: 4.37 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.61 Total: -5.05 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: 0.79 Total: -60.45 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.36 Total: -4.46 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 7.40 SS G_CDS: -4.84 Total: 2.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.58 -11.00 -42.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002260727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.021 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds