Wall clock time and date at job start Tue Mar 31 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 S 1.81003 * 109.46717 * 207.69863 * 3 2 1 5 5 C 1.76201 * 100.00028 * 180.02562 * 4 3 2 6 6 N 1.31650 * 126.08357 * 0.02562 * 5 4 3 7 7 C 1.33345 * 109.69352 * 180.02562 * 6 5 4 8 8 C 1.50695 * 125.43437 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46695 * 90.00412 * 8 7 6 10 10 C 1.50705 * 109.47076 * 180.02562 * 9 8 7 11 11 N 1.30728 * 125.41136 * 269.99677 * 10 9 8 12 12 N 1.40427 * 106.99164 * 179.76881 * 11 10 9 13 13 H 0.96993 * 126.85777 * 180.23803 * 12 11 10 14 14 C 1.35167 * 106.29369 * 0.37189 * 12 11 10 15 15 S 1.76201 * 126.09510 * 179.89030 * 14 12 11 16 16 C 1.76199 * 99.99986 * 179.68894 * 15 14 12 17 17 H 1.08002 * 120.00405 * 0.02562 * 16 15 14 18 18 C 1.38723 * 119.99795 * 179.72337 * 16 15 14 19 19 N 1.31604 * 120.00234 * 0.27762 * 18 16 15 20 20 Si 1.86803 * 119.99945 * 180.27922 * 18 16 15 21 21 H 1.48496 * 109.47187 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47428 * 120.00196 * 20 18 16 23 23 H 1.48498 * 109.47018 * 240.00067 * 20 18 16 24 24 N 1.31706 * 107.81441 * 359.62869 * 14 12 11 25 25 N 1.30592 * 109.13593 * 0.23012 * 7 6 5 26 26 N 1.35076 * 126.09129 * 180.02562 * 5 4 3 27 27 H 0.96999 * 126.82666 * 359.97438 * 26 5 4 28 28 H 1.08999 * 109.47372 * 87.70780 * 3 2 1 29 29 H 1.08994 * 109.47461 * 327.69937 * 3 2 1 30 30 H 1.08995 * 109.47264 * 330.00856 * 8 7 6 31 31 H 1.09002 * 109.47596 * 209.99836 * 8 7 6 32 32 H 1.09000 * 109.47340 * 60.00057 * 9 8 7 33 33 H 1.09004 * 109.47317 * 299.99729 * 9 8 7 34 34 H 0.96996 * 120.00447 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 16 3.2106 1.5119 0.7932 5 6 4.9487 1.2565 0.6578 6 7 5.5390 0.2150 0.1100 7 6 6.8626 0.3578 0.1848 8 6 7.8784 -0.6275 -0.3330 9 6 8.2220 -0.2899 -1.7852 10 6 9.2374 -1.2757 -2.3034 11 7 10.5351 -1.1358 -2.2299 12 7 11.1048 -2.2744 -2.8223 13 1 12.0502 -2.4685 -2.9192 14 6 10.0729 -3.0446 -3.2332 15 16 10.2000 -4.6005 -4.0505 16 6 8.4913 -4.9816 -4.2502 17 1 7.7392 -4.2953 -3.8900 18 6 8.1122 -6.1603 -4.8757 19 7 9.0286 -6.9964 -5.3151 20 14 6.3007 -6.5608 -5.0944 21 1 5.4788 -5.4669 -4.5175 22 1 5.9956 -6.6997 -6.5411 23 1 5.9878 -7.8344 -4.3980 24 7 8.9554 -2.4276 -2.9089 25 7 7.1384 1.4853 0.7834 26 7 5.9127 2.0942 1.0977 27 1 5.7838 2.9453 1.5448 28 1 2.9714 -0.0403 -1.0268 29 1 2.9718 -0.8677 0.5491 30 1 7.4659 -1.6351 -0.2821 31 1 8.7808 -0.5731 0.2759 32 1 8.6345 0.7177 -1.8362 33 1 7.3197 -0.3444 -2.3942 34 1 8.7635 -7.8208 -5.7522 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002581630.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:07 Heat of formation + Delta-G solvation = 186.955668 kcal Electronic energy + Delta-G solvation = -21917.508158 eV Core-core repulsion = 18334.441912 eV Total energy + Delta-G solvation = -3583.066246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.047 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.33974 -41.09447 -37.19672 -35.04744 -32.79148 -32.67663 -31.93318 -30.98267 -30.69687 -29.54503 -25.74014 -25.07236 -23.64883 -22.28096 -20.67803 -19.71357 -19.54060 -18.43453 -17.93011 -16.98388 -16.90118 -16.14224 -15.85248 -15.42734 -15.27561 -15.02108 -14.95383 -14.30317 -13.77678 -13.41197 -13.23818 -13.12993 -12.90124 -12.64591 -12.42884 -12.21096 -11.71534 -11.45016 -11.25109 -11.18624 -11.05857 -10.91309 -10.70777 -10.44096 -10.40476 -10.17035 -9.76946 -9.35311 -9.24340 -9.03098 -8.95416 -8.46411 -6.94082 -6.50023 -4.25463 0.10979 1.01481 1.05995 2.18575 2.19364 2.38195 2.45134 2.47781 2.56006 3.16182 3.16572 3.22452 3.31809 3.54258 3.59005 3.98601 4.10508 4.30976 4.48309 4.85223 4.90734 4.94773 4.99432 5.17483 5.28507 5.58773 5.64770 5.77633 5.97484 6.16761 6.19626 6.46750 6.88796 6.92958 7.11368 7.55747 7.60015 7.61068 8.37428 8.81446 9.02965 10.58559 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.002820 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.596489 B = 9927.397714 C =12702.035006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C 0.215 3.785 3 C -0.017 4.017 4 S 0.050 5.950 5 C 0.249 3.751 6 N -0.525 5.525 7 C 0.253 3.747 8 C -0.021 4.021 9 C -0.009 4.009 10 C 0.225 3.775 11 N -0.344 5.344 12 N -0.492 5.492 13 H 0.434 0.566 14 C 0.261 3.739 15 S 0.140 5.860 16 C -0.529 4.529 17 H 0.110 0.890 18 C 0.074 3.926 19 N -0.878 5.878 20 Si 0.931 3.069 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.279 1.279 24 N -0.540 5.540 25 N -0.296 5.296 26 N -0.462 5.462 27 H 0.444 0.556 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.621 15.502 11.663 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.074 5.074 2 C -0.104 4.104 3 C -0.168 4.168 4 S 0.275 5.725 5 C -0.138 4.138 6 N -0.258 5.258 7 C -0.031 4.031 8 C -0.062 4.062 9 C -0.050 4.050 10 C -0.060 4.060 11 N -0.176 5.176 12 N -0.213 5.213 13 H 0.279 0.721 14 C -0.120 4.120 15 S 0.369 5.631 16 C -0.678 4.678 17 H 0.128 0.872 18 C -0.135 4.135 19 N -0.514 5.514 20 Si 0.757 3.243 21 H -0.188 1.188 22 H -0.205 1.205 23 H -0.204 1.204 24 N -0.275 5.275 25 N -0.125 5.125 26 N -0.183 5.183 27 H 0.291 0.709 28 H 0.167 0.833 29 H 0.166 0.834 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.369 16.008 11.932 21.282 hybrid contribution -0.365 -0.303 -0.192 0.512 sum -7.734 15.705 11.740 21.078 Atomic orbital electron populations 1.81313 1.11897 1.06577 1.07630 1.27764 0.93629 0.94795 0.94257 1.20892 0.85385 1.01389 1.09170 1.85929 0.86770 1.25587 1.74209 1.26082 0.97896 0.91041 0.98754 1.70948 1.06835 1.23106 1.24908 1.24256 0.90794 0.93001 0.95087 1.19951 0.94735 0.96069 0.95433 1.19625 0.96016 0.95342 0.94031 1.23818 0.90746 0.94211 0.97271 1.77668 1.09604 1.06451 1.23926 1.47745 1.09169 1.15569 1.48799 0.72077 1.27804 0.85018 1.01312 0.97834 1.83685 1.14296 1.02330 1.62756 1.23296 0.90497 1.09282 1.44739 0.87231 1.25104 0.99958 0.94625 0.93806 1.69936 1.33647 1.10912 1.36858 0.85884 0.81723 0.78619 0.78093 1.18770 1.20450 1.20424 1.70953 1.26601 1.07460 1.22459 1.78035 1.01244 1.10926 1.22344 1.47861 1.02628 1.20242 1.47569 0.70911 0.83256 0.83370 0.87846 0.88896 0.89853 0.88844 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.15 18.54 42.15 0.78 -3.37 16 2 C 0.21 1.60 15.43 -20.76 -0.32 1.28 16 3 C -0.02 -0.09 5.70 34.37 0.20 0.11 16 4 S 0.05 0.27 22.27 -107.50 -2.39 -2.12 16 5 C 0.25 2.13 8.31 -89.38 -0.74 1.39 16 6 N -0.53 -5.85 10.57 -10.85 -0.11 -5.96 16 7 C 0.25 3.10 7.38 -156.86 -1.16 1.94 16 8 C -0.02 -0.27 5.82 -27.88 -0.16 -0.43 16 9 C -0.01 -0.13 5.82 -27.88 -0.16 -0.29 16 10 C 0.22 4.23 7.38 -156.91 -1.16 3.07 16 11 N -0.34 -6.48 12.78 32.41 0.41 -6.07 16 12 N -0.49 -9.12 7.48 30.48 0.23 -8.89 16 13 H 0.43 6.49 8.96 -182.36 -1.63 4.85 16 14 C 0.26 5.65 8.30 -89.25 -0.74 4.91 16 15 S 0.14 3.29 21.89 -107.50 -2.35 0.94 16 16 C -0.53 -14.01 9.37 30.91 0.29 -13.72 16 17 H 0.11 2.97 6.90 -52.49 -0.36 2.60 16 18 C 0.07 1.94 5.49 -17.47 -0.10 1.84 16 19 N -0.88 -23.72 13.22 55.49 0.73 -22.99 16 20 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16 21 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 24 N -0.54 -11.91 9.99 -10.83 -0.11 -12.02 16 25 N -0.30 -3.47 12.78 32.42 0.41 -3.05 16 26 N -0.46 -3.89 7.47 30.45 0.23 -3.66 16 27 H 0.44 2.18 8.96 -182.35 -1.63 0.54 16 28 H 0.15 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.15 0.63 8.14 -51.92 -0.42 0.20 16 30 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -33.33 348.87 -11.29 -44.63 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.30 Total: 1.87 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -4.06 Total: 0.11 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: 2.58 Total: -66.01 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -4.75 Total: -1.18 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.33 -11.29 -44.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002581630.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.581 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds