Wall clock time and date at job start Tue Mar 31 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38282 * 119.93563 * 2 1 4 4 C 1.38114 * 120.06961 * 180.02562 * 3 2 1 5 5 C 1.38844 * 119.93141 * 359.97438 * 4 3 2 6 6 N 1.40131 * 120.06843 * 179.97438 * 5 4 3 7 7 C 1.36979 * 127.18561 * 65.02424 * 6 5 4 8 8 S 1.76204 * 126.40502 * 0.02562 * 7 6 5 9 9 C 1.76198 * 99.99829 * 179.70912 * 8 7 6 10 10 H 1.07999 * 120.00293 * 359.97438 * 9 8 7 11 11 C 1.38655 * 119.99762 * 179.97438 * 9 8 7 12 12 N 1.31643 * 119.99716 * 359.72923 * 11 9 8 13 13 Si 1.86795 * 120.00032 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47018 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46816 * 120.00051 * 13 11 9 16 16 H 1.48493 * 109.47595 * 240.00224 * 13 11 9 17 17 N 1.31589 * 107.19113 * 179.73665 * 7 6 5 18 18 N 1.28511 * 110.08546 * 0.23436 * 17 7 6 19 19 C 1.31523 * 110.00475 * 359.97438 * 18 17 7 20 20 C 1.47751 * 126.44847 * 180.02562 * 19 18 17 21 21 C 1.39634 * 120.14650 * 194.70260 * 20 19 18 22 22 C 1.37945 * 119.84758 * 179.69717 * 21 20 19 23 23 C 1.38366 * 120.14806 * 0.57288 * 22 21 20 24 24 C 1.38376 * 120.30477 * 359.72641 * 23 22 21 25 25 C 1.37945 * 120.14594 * 359.97165 * 24 23 22 26 26 C 1.38849 * 119.86629 * 0.25827 * 5 4 3 27 27 C 1.38119 * 119.92877 * 359.47060 * 26 5 4 28 28 H 1.09001 * 109.47183 * 90.00172 * 1 2 3 29 29 H 1.08997 * 109.47433 * 210.00691 * 1 2 3 30 30 H 1.09000 * 109.47332 * 330.00111 * 1 2 3 31 31 H 1.08008 * 119.96258 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.03477 * 180.02562 * 4 3 2 33 33 H 0.97000 * 119.99998 * 180.02562 * 12 11 9 34 34 H 1.07997 * 120.07280 * 359.97438 * 21 20 19 35 35 H 1.08002 * 119.92147 * 180.29351 * 22 21 20 36 36 H 1.08005 * 119.84906 * 179.69592 * 23 22 21 37 37 H 1.07998 * 119.92672 * 179.97438 * 24 23 22 38 38 H 1.07994 * 120.07095 * 180.02562 * 25 24 23 39 39 H 1.07998 * 120.03592 * 179.71700 * 26 5 4 40 40 H 1.08001 * 119.96466 * 180.27752 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5782 1.2016 -0.0005 5 6 4.2738 -0.0001 -0.0005 6 7 5.6751 -0.0001 -0.0016 7 6 6.5038 0.4610 0.9868 8 16 6.0072 1.1749 2.5193 9 6 7.5859 1.4983 3.2319 10 1 8.4851 1.2426 2.6911 11 6 7.6737 2.0812 4.4869 12 7 6.5776 2.3977 5.1437 13 14 9.3473 2.4234 5.2427 14 1 10.4126 1.9832 4.3064 15 1 9.4857 3.8794 5.5000 16 1 9.4741 1.6804 6.5221 17 7 7.7400 0.2656 0.5805 18 7 7.7411 -0.2763 -0.5848 19 6 6.5057 -0.4617 -0.9960 20 6 6.0887 -1.0582 -2.2818 21 6 4.7717 -0.9198 -2.7247 22 6 4.3906 -1.4739 -3.9291 23 6 5.3070 -2.1757 -4.6921 24 6 6.6122 -2.3220 -4.2563 25 6 7.0082 -1.7676 -3.0568 26 6 3.5781 -1.2017 -0.0054 27 6 2.1969 -1.1984 0.0008 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 1.6553 2.1328 -0.0004 32 1 4.1166 2.1378 -0.0001 33 1 6.6390 2.8058 6.0215 34 1 4.0542 -0.3764 -2.1278 35 1 3.3734 -1.3636 -4.2751 36 1 5.0022 -2.6117 -5.6321 37 1 7.3223 -2.8713 -4.8565 38 1 8.0272 -1.8822 -2.7180 39 1 4.1164 -2.1380 -0.0101 40 1 1.6552 -2.1327 0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002653705.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:19 Heat of formation + Delta-G solvation = 123.657787 kcal Electronic energy + Delta-G solvation = -25454.475411 eV Core-core repulsion = 21940.301099 eV Total energy + Delta-G solvation = -3514.174312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.26198 -39.45265 -38.83921 -34.96327 -32.70598 -32.22868 -31.38466 -31.16709 -30.84016 -28.76182 -26.71768 -25.73071 -23.52682 -23.25961 -22.62216 -22.13649 -21.09295 -20.33076 -18.58991 -17.54163 -16.62978 -16.06512 -15.77242 -15.46944 -15.42187 -14.96830 -14.67264 -14.53320 -14.10380 -13.93852 -13.68059 -13.57681 -13.43744 -13.04101 -12.81861 -12.45067 -12.26454 -11.89792 -11.44015 -11.40114 -11.27993 -11.18554 -11.12358 -11.01866 -10.72407 -10.26936 -10.11539 -10.03642 -9.92863 -9.27306 -9.10755 -8.94456 -8.87682 -8.56043 -8.30126 -6.78449 -6.50937 -4.25047 0.86195 1.09583 1.25814 1.40673 2.34450 2.44880 3.16191 3.17680 3.22710 3.33770 3.42577 3.54312 3.95810 3.98824 4.46459 4.70826 4.72957 4.84778 4.88708 4.91885 4.93276 5.00366 5.10497 5.15398 5.25431 5.37934 5.41081 5.43515 5.53392 5.58857 5.75733 5.83851 5.89185 5.89751 6.05121 6.10993 6.18528 6.30484 6.42519 6.45523 6.46383 6.61634 6.65328 6.73606 6.91629 7.45693 7.53700 8.34004 9.01157 9.31884 10.57095 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.004182 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.648035 B = 6693.320553 C = 8942.863574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 C -0.106 4.106 4 C -0.095 4.095 5 C 0.124 3.876 6 N -0.436 5.436 7 C 0.180 3.820 8 S 0.154 5.846 9 C -0.537 4.537 10 H 0.106 0.894 11 C 0.077 3.923 12 N -0.876 5.876 13 Si 0.932 3.068 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.277 1.277 17 N -0.303 5.303 18 N -0.265 5.265 19 C 0.176 3.824 20 C 0.008 3.992 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.085 4.085 26 C -0.098 4.098 27 C -0.110 4.110 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.274 0.726 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 -6.879 -14.941 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C -0.125 4.125 4 C -0.115 4.115 5 C 0.033 3.967 6 N -0.130 5.130 7 C -0.188 4.188 8 S 0.389 5.611 9 C -0.686 4.686 10 H 0.124 0.876 11 C -0.133 4.133 12 N -0.511 5.511 13 Si 0.757 3.243 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.203 1.203 17 N -0.148 5.148 18 N -0.105 5.105 19 C -0.089 4.089 20 C 0.005 3.995 21 C -0.135 4.135 22 C -0.135 4.135 23 C -0.139 4.139 24 C -0.137 4.137 25 C -0.106 4.106 26 C -0.118 4.118 27 C -0.129 4.129 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.409 -6.523 -14.170 19.933 hybrid contribution 0.884 0.035 0.132 0.894 sum -11.525 -6.487 -14.038 19.287 Atomic orbital electron populations 1.20803 0.90782 1.03131 1.02356 1.20021 0.96381 0.92972 0.98597 1.20923 0.92951 0.98094 1.00486 1.21255 0.94594 0.97326 0.98313 1.17481 0.80088 0.94434 1.04743 1.43676 1.04604 1.49797 1.14917 1.28681 0.88707 1.02125 0.99247 1.83622 1.12699 1.66296 0.98524 1.23314 0.92795 1.47126 1.05325 0.87555 1.25075 0.98947 0.93780 0.95462 1.69959 1.27753 1.39417 1.13995 0.85876 0.81489 0.78139 0.78806 1.18761 1.20299 1.20299 1.74804 1.15850 1.19102 1.05042 1.74229 1.16134 1.13715 1.06420 1.22703 0.86941 1.06829 0.92424 1.17514 0.93876 0.98128 0.90008 1.21514 0.95148 1.00007 0.96801 1.20973 0.99626 0.98437 0.94450 1.21218 0.93656 0.99301 0.99768 1.21065 0.96296 1.00204 0.96162 1.21221 0.99716 0.95723 0.93907 1.21150 0.94555 0.96868 0.99213 1.20866 0.92870 0.98006 1.01120 0.91038 0.91351 0.91231 0.84984 0.84849 0.91604 0.85462 0.85923 0.86086 0.85649 0.84798 0.85478 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.08 -0.83 5.88 -104.59 -0.62 -1.45 16 3 C -0.11 -1.25 9.69 -39.61 -0.38 -1.63 16 4 C -0.10 -1.43 9.83 -39.40 -0.39 -1.82 16 5 C 0.12 2.06 3.45 -83.61 -0.29 1.77 16 6 N -0.44 -8.83 2.86 -58.10 -0.17 -9.00 16 7 C 0.18 4.34 8.00 -87.67 -0.70 3.64 16 8 S 0.15 3.92 21.58 -107.50 -2.32 1.60 16 9 C -0.54 -15.15 9.37 30.89 0.29 -14.86 16 10 H 0.11 3.10 6.92 -52.49 -0.36 2.74 16 11 C 0.08 2.09 5.49 -17.48 -0.10 2.00 16 12 N -0.88 -24.43 13.22 55.48 0.73 -23.70 16 13 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 14 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 N -0.30 -7.79 11.02 30.82 0.34 -7.45 16 18 N -0.26 -6.14 11.97 32.60 0.39 -5.75 16 19 C 0.18 3.54 7.68 -153.62 -1.18 2.36 16 20 C 0.01 0.12 5.87 -104.97 -0.62 -0.49 16 21 C -0.11 -1.57 8.50 -39.17 -0.33 -1.90 16 22 C -0.12 -1.28 10.03 -39.64 -0.40 -1.68 16 23 C -0.12 -1.22 10.04 -39.48 -0.40 -1.61 16 24 C -0.12 -1.32 10.03 -39.64 -0.40 -1.72 16 25 C -0.09 -1.21 9.70 -39.17 -0.38 -1.59 16 26 C -0.10 -1.38 7.99 -39.40 -0.31 -1.69 16 27 C -0.11 -1.22 9.69 -39.61 -0.38 -1.61 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.13 1.76 4.66 -52.49 -0.24 1.51 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.93 7.94 -52.49 -0.42 1.52 16 39 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -32.45 361.33 -11.20 -43.65 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.38 Total: 1.64 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -6.22 Total: -22.75 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 1.30 Total: -45.89 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -2.32 Total: 1.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.45 -11.20 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002653705.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.308 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds