Wall clock time and date at job start Tue Mar 31 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35955 * 116.99616 * 2 1 4 4 C 1.37984 * 119.99677 * 0.28229 * 3 2 1 5 5 C 1.40193 * 119.82416 * 180.20837 * 4 3 2 6 6 C 1.46515 * 120.09723 * 179.78391 * 5 4 3 7 7 C 1.36564 * 120.00002 * 225.15951 * 6 5 4 8 8 C 1.47260 * 127.48924 * 190.63247 * 7 6 5 9 9 O 1.21757 * 126.02071 * 359.97438 * 8 7 6 10 10 N 1.34383 * 107.95613 * 179.97438 * 8 7 6 11 11 C 1.38989 * 111.40935 * 359.97438 * 10 8 7 12 12 C 1.39067 * 131.70084 * 179.97438 * 11 10 8 13 13 C 1.38001 * 120.12732 * 180.28209 * 12 11 10 14 14 C 1.38497 * 120.63176 * 359.40306 * 13 12 11 15 15 C 1.38037 * 120.08200 * 0.61812 * 14 13 12 16 16 C 1.39088 * 119.72189 * 359.68380 * 15 14 13 17 17 C 1.40237 * 119.80516 * 359.51285 * 5 4 3 18 18 C 1.37560 * 119.98716 * 0.24876 * 17 5 4 19 19 C 1.39134 * 120.17753 * 359.97438 * 18 17 5 20 20 O 1.35566 * 119.90757 * 179.97438 * 19 18 17 21 21 C 1.34745 * 116.99711 * 5.61651 * 20 19 18 22 22 H 1.07995 * 119.99723 * 354.92966 * 21 20 19 23 23 C 1.38727 * 119.99787 * 174.93627 * 21 20 19 24 24 N 1.31503 * 120.00299 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99768 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47254 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47132 * 119.99623 * 25 23 21 28 28 H 1.48500 * 109.47168 * 239.99346 * 25 23 21 29 29 H 1.09007 * 109.47020 * 300.00126 * 1 2 3 30 30 H 1.09006 * 109.47228 * 59.99724 * 1 2 3 31 31 H 1.09001 * 109.47079 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.09369 * 359.97112 * 4 3 2 33 33 H 1.08003 * 120.00071 * 45.16130 * 6 5 4 34 34 H 0.96999 * 124.29713 * 179.97438 * 10 8 7 35 35 H 1.08002 * 119.93559 * 0.02562 * 12 11 10 36 36 H 1.08000 * 119.68494 * 179.72572 * 13 12 11 37 37 H 1.07997 * 119.96520 * 180.32355 * 14 13 12 38 38 H 1.07993 * 120.13921 * 179.70636 * 15 14 13 39 39 H 1.08000 * 120.01011 * 180.27739 * 17 5 4 40 40 H 1.08000 * 119.91716 * 180.02562 * 18 17 5 41 41 H 0.96992 * 120.00309 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2945 2.3685 0.0059 5 6 1.9346 3.6158 0.0014 6 6 1.1424 4.8482 0.0029 7 6 1.4712 5.8724 -0.8386 8 6 0.9395 7.2456 -0.8296 9 8 0.1091 7.6868 -0.0562 10 7 1.5323 7.9259 -1.8254 11 6 2.4327 7.1267 -2.5201 12 6 3.2599 7.3933 -3.6057 13 6 4.0706 6.4014 -4.1188 14 6 4.0809 5.1364 -3.5550 15 6 3.2665 4.8526 -2.4773 16 6 2.4412 5.8438 -1.9567 17 6 3.3355 3.6803 0.0014 18 6 4.0771 2.5218 0.0005 19 6 3.4412 1.2843 0.0002 20 8 4.1775 0.1460 -0.0012 21 6 5.5130 0.2812 0.1153 22 1 5.9575 1.2654 0.1218 23 6 6.3170 -0.8438 0.2267 24 7 5.7757 -2.0423 0.2192 25 14 8.1686 -0.6564 0.3874 26 1 8.5236 0.7854 0.3691 27 1 8.6182 -1.2611 1.6671 28 1 8.8361 -1.3445 -0.7466 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2159 2.3136 0.0100 33 1 0.2983 4.9469 0.6694 34 1 1.3545 8.8565 -2.0331 35 1 3.2648 8.3774 -4.0507 36 1 4.7069 6.6151 -4.9649 37 1 4.7235 4.3697 -3.9620 38 1 3.2703 3.8652 -2.0400 39 1 3.8321 4.6394 0.0025 40 1 5.1559 2.5728 0.0009 41 1 6.3378 -2.8289 0.2967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002772783.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:57 Heat of formation + Delta-G solvation = -6.053899 kcal Electronic energy + Delta-G solvation = -27995.906893 eV Core-core repulsion = 24001.062238 eV Total energy + Delta-G solvation = -3994.844655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.115 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.36883 -39.77267 -38.19549 -37.74409 -36.72215 -35.50690 -33.40741 -32.43032 -30.69480 -29.59148 -29.29170 -28.32515 -26.81148 -25.73962 -24.45112 -22.54623 -21.79232 -21.71100 -21.07137 -19.15547 -18.27607 -17.88445 -17.35598 -16.79531 -16.29973 -15.74551 -15.46366 -15.38817 -15.27284 -14.73054 -14.64245 -14.17724 -14.00916 -13.96890 -13.76174 -13.58616 -13.52859 -12.85386 -12.74358 -12.52518 -11.96758 -11.87408 -11.76011 -11.56237 -11.27065 -11.17642 -10.99992 -10.82062 -10.81289 -10.54531 -10.45548 -10.05686 -9.92741 -9.66544 -9.05317 -8.41850 -8.11183 -7.84143 -6.96158 -6.67918 -4.18433 0.40954 1.35873 1.71349 2.03419 2.27179 3.00927 3.02726 3.03304 3.09152 3.32457 3.78522 3.88443 3.92583 4.27029 4.37699 4.63257 4.80604 4.83817 4.95527 5.08184 5.22049 5.31630 5.39480 5.48588 5.49395 5.50615 5.59905 5.63093 5.77966 5.86954 5.95724 6.11038 6.14201 6.26959 6.27692 6.39061 6.49951 6.64926 6.68359 6.74887 6.86000 6.90591 7.01643 7.10548 7.13823 7.38337 7.72639 8.01146 8.05672 8.75322 9.43381 10.47641 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.011667 B = 0.003580 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.383765 B = 7819.642751 C = 9394.356180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.134 4.134 5 C -0.178 4.178 6 C 0.081 3.919 7 C -0.211 4.211 8 C 0.562 3.438 9 O -0.522 6.522 10 N -0.656 5.656 11 C 0.128 3.872 12 C -0.143 4.143 13 C -0.094 4.094 14 C -0.140 4.140 15 C -0.069 4.069 16 C -0.083 4.083 17 C -0.046 4.046 18 C -0.229 4.229 19 C 0.150 3.850 20 O -0.144 6.144 21 C -0.390 4.390 22 H 0.100 0.900 23 C 0.042 3.958 24 N -0.842 5.842 25 Si 0.944 3.056 26 H -0.263 1.263 27 H -0.273 1.273 28 H -0.273 1.273 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.412 0.588 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 12.510 -5.769 14.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.153 4.153 5 C -0.180 4.180 6 C 0.062 3.938 7 C -0.215 4.215 8 C 0.354 3.646 9 O -0.401 6.401 10 N -0.297 5.297 11 C 0.031 3.969 12 C -0.164 4.164 13 C -0.113 4.113 14 C -0.159 4.159 15 C -0.087 4.087 16 C -0.086 4.086 17 C -0.065 4.065 18 C -0.249 4.249 19 C 0.093 3.907 20 O -0.044 6.044 21 C -0.465 4.465 22 H 0.117 0.883 23 C -0.165 4.165 24 N -0.473 5.473 25 Si 0.768 3.232 26 H -0.187 1.187 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.250 0.750 35 H 0.139 0.861 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.163 0.837 39 H 0.134 0.866 40 H 0.157 0.843 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.016 11.951 -5.278 13.995 hybrid contribution 0.583 0.847 -0.112 1.035 sum -4.433 12.798 -5.390 14.578 Atomic orbital electron populations 1.22923 0.80135 1.03122 1.00409 1.86243 1.19590 1.26144 1.89689 1.18000 0.89340 0.84564 1.07359 1.20797 0.98605 0.90564 1.05352 1.18048 0.92787 0.91060 1.16069 1.22181 0.92892 0.89349 0.89348 1.20502 1.04962 0.94827 1.01168 1.18369 0.80044 0.86854 0.79313 1.90865 1.32398 1.75753 1.41039 1.43231 1.40502 1.14222 1.31763 1.18265 0.93171 0.90507 0.95007 1.20152 0.99077 1.00305 0.96859 1.20865 0.98146 0.92880 0.99405 1.21096 1.00620 0.97066 0.97076 1.21280 0.93118 0.99366 0.94938 1.18898 0.99305 0.93176 0.97197 1.20901 0.91994 0.97619 0.95977 1.20808 1.00788 0.90499 1.12756 1.18899 0.88222 0.87594 0.95995 1.83971 1.19815 1.25939 1.74714 1.21599 0.78277 0.95170 1.51425 0.88317 1.25426 1.00958 0.94127 0.95992 1.70042 1.36688 0.97880 1.42727 0.85591 0.79828 0.79223 0.78543 1.18728 1.19875 1.19861 0.93411 0.93450 0.88952 0.85810 0.85052 0.75030 0.86144 0.85668 0.85428 0.83672 0.86598 0.84327 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.14 10.28 -34.22 -0.35 -6.50 16 3 C 0.05 1.06 6.70 -39.13 -0.26 0.79 16 4 C -0.13 -2.24 8.78 -38.94 -0.34 -2.58 16 5 C -0.18 -2.88 4.90 -105.08 -0.51 -3.40 16 6 C 0.08 1.19 9.78 -36.85 -0.36 0.83 16 7 C -0.21 -3.18 5.98 -102.81 -0.61 -3.79 16 8 C 0.56 8.54 8.45 -12.77 -0.11 8.43 16 9 O -0.52 -9.20 18.05 5.14 0.09 -9.10 16 10 N -0.66 -8.09 5.92 -10.81 -0.06 -8.16 16 11 C 0.13 1.64 7.17 -83.60 -0.60 1.04 16 12 C -0.14 -1.52 10.06 -39.36 -0.40 -1.92 16 13 C -0.09 -0.99 10.01 -39.57 -0.40 -1.39 16 14 C -0.14 -1.71 10.04 -39.56 -0.40 -2.11 16 15 C -0.07 -0.99 8.30 -39.34 -0.33 -1.31 16 16 C -0.08 -1.20 5.61 -104.85 -0.59 -1.79 16 17 C -0.05 -0.78 5.99 -39.08 -0.23 -1.02 16 18 C -0.23 -4.45 8.92 -39.50 -0.35 -4.81 16 19 C 0.15 3.38 6.67 -38.70 -0.26 3.12 16 20 O -0.14 -3.87 9.52 -13.76 -0.13 -4.00 16 21 C -0.39 -10.05 9.48 30.91 0.29 -9.76 16 22 H 0.10 2.31 5.18 -52.49 -0.27 2.03 16 23 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 24 N -0.84 -23.26 13.67 55.48 0.76 -22.51 16 25 Si 0.94 19.01 29.55 -169.99 -5.02 13.98 16 26 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 27 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 28 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 29 H 0.05 0.58 7.65 -51.93 -0.40 0.19 16 30 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.12 1.72 6.28 -52.49 -0.33 1.39 16 33 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 34 H 0.41 3.87 8.96 -40.82 -0.37 3.50 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.15 2.29 4.71 -52.49 -0.25 2.04 16 39 H 0.12 1.81 7.11 -52.49 -0.37 1.43 16 40 H 0.14 2.66 5.61 -52.49 -0.29 2.37 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -31.28 352.32 -7.90 -39.18 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -3.93 Total: 9.05 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -4.56 Total: -17.26 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.69 Total: -30.66 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.39 Total: -19.60 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.28 -7.90 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002772783.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.122 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds