Wall clock time and date at job start Tue Mar 31 2020 05:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47160 * 84.26859 * 3 2 1 5 5 C 1.37101 * 119.99997 * 264.22832 * 4 3 2 6 6 H 1.08001 * 120.00081 * 197.72063 * 5 4 3 7 7 C 1.38946 * 119.99861 * 17.72431 * 5 4 3 8 8 N 1.31409 * 120.00359 * 21.41329 * 7 5 4 9 9 Si 1.86804 * 119.99928 * 201.41833 * 7 5 4 10 10 H 1.48503 * 109.46987 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47354 * 119.99637 * 9 7 5 12 12 H 1.48502 * 109.46890 * 239.99815 * 9 7 5 13 13 C 1.34783 * 120.00124 * 84.22854 * 4 3 2 14 14 O 1.21294 * 119.99734 * 180.02562 * 13 4 3 15 15 C 1.50696 * 119.99819 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.46990 * 180.02562 * 15 13 4 17 17 S 1.81404 * 109.47136 * 179.97438 * 16 15 13 18 18 O 1.42104 * 108.57962 * 65.51023 * 17 16 15 19 19 O 1.42101 * 108.57861 * 294.48390 * 17 16 15 20 20 C 1.81405 * 101.92181 * 179.97438 * 17 16 15 21 21 C 1.50696 * 109.46859 * 179.97438 * 20 17 16 22 22 C 1.38242 * 119.99793 * 90.00523 * 21 20 17 23 23 C 1.38233 * 119.99961 * 179.97438 * 22 21 20 24 24 C 1.38233 * 119.99760 * 359.97438 * 23 22 21 25 25 C 1.38232 * 120.00391 * 0.27962 * 24 23 22 26 26 C 1.38227 * 120.00261 * 269.97782 * 21 20 17 27 27 H 1.08996 * 109.47427 * 324.26509 * 3 2 1 28 28 H 1.09002 * 109.46958 * 204.26549 * 3 2 1 29 29 H 0.96997 * 120.00421 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47243 * 59.99676 * 15 13 4 31 31 H 1.09005 * 109.46895 * 299.99809 * 15 13 4 32 32 H 1.08998 * 109.47217 * 59.99885 * 16 15 13 33 33 H 1.09005 * 109.46912 * 299.99512 * 16 15 13 34 34 H 1.09005 * 109.46852 * 60.00111 * 20 17 16 35 35 H 1.08996 * 109.46858 * 299.99938 * 20 17 16 36 36 H 1.08001 * 119.99585 * 359.96926 * 22 21 20 37 37 H 1.08001 * 119.99733 * 179.97438 * 23 22 21 38 38 H 1.08002 * 119.99761 * 179.97438 * 24 23 22 39 39 H 1.08001 * 120.00194 * 179.72511 * 25 24 23 40 40 H 1.07998 * 120.00046 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.1371 -1.3743 5 6 3.4380 -1.3729 -1.8598 6 1 4.0544 -1.4547 -2.7428 7 6 2.9912 -2.5201 -1.2157 8 7 1.9376 -2.4658 -0.4322 9 14 3.8882 -4.1398 -1.4636 10 1 5.0336 -3.9352 -2.3863 11 1 4.3880 -4.6341 -0.1555 12 1 2.9558 -5.1379 -2.0464 13 6 3.2099 0.9512 -2.1614 14 8 3.6138 0.8370 -3.2994 15 6 2.8349 2.3096 -1.6276 16 6 3.0549 3.3633 -2.7149 17 16 2.6028 4.9985 -2.0725 18 8 3.5055 5.3407 -1.0298 19 8 1.2057 5.0126 -1.8132 20 6 2.9372 6.0672 -3.4996 21 6 2.6120 7.4953 -3.1448 22 6 3.5857 8.3107 -2.5989 23 6 3.2876 9.6208 -2.2738 24 6 2.0160 10.1156 -2.4952 25 6 1.0409 9.2987 -3.0362 26 6 1.3404 7.9900 -3.3657 27 1 2.9717 -0.8333 0.6002 28 1 2.9709 0.9377 0.4223 29 1 1.6259 -3.2666 0.0177 30 1 3.4556 2.5442 -0.7628 31 1 1.7858 2.3068 -1.3318 32 1 2.4339 3.1285 -3.5793 33 1 4.1039 3.3662 -3.0110 34 1 2.3202 5.7529 -4.3415 35 1 3.9898 5.9908 -3.7720 36 1 4.5793 7.9241 -2.4263 37 1 4.0482 10.2577 -1.8470 38 1 1.7830 11.1391 -2.2409 39 1 0.0462 9.6840 -3.2051 40 1 0.5797 7.3530 -3.7922 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002875963.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:18 Heat of formation + Delta-G solvation = -40.526056 kcal Electronic energy + Delta-G solvation = -25836.970801 eV Core-core repulsion = 21937.960840 eV Total energy + Delta-G solvation = -3899.009961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 336.098 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -39.53593 -39.01275 -36.96131 -36.01191 -35.91316 -34.46120 -33.35184 -32.81419 -31.78185 -31.20035 -27.84945 -27.52638 -25.89086 -23.71903 -22.90612 -21.80754 -19.27414 -18.90208 -17.99767 -17.30326 -17.19718 -16.55910 -16.25431 -16.17711 -15.73295 -15.38098 -15.17080 -14.73482 -14.59399 -14.29223 -13.72392 -13.60722 -13.14461 -13.06984 -13.03392 -12.94707 -12.89480 -12.28338 -12.06017 -11.99364 -11.95830 -11.66397 -11.65335 -11.43110 -11.32552 -11.28206 -11.17719 -11.12644 -10.61598 -10.59178 -10.40156 -10.36274 -9.34476 -9.22187 -8.99692 -8.74498 -8.13359 -6.57420 -4.07453 -0.19905 1.07042 1.10545 2.69328 3.03600 3.18514 3.24264 3.40062 3.46344 3.56173 3.72148 3.91136 3.94353 4.06712 4.17873 4.45515 4.61638 4.71055 4.76545 4.78592 4.82838 4.83569 4.99910 5.13425 5.16451 5.18171 5.29616 5.40403 5.62400 5.65167 5.73652 5.83833 5.96082 6.06833 6.13239 6.18470 6.21027 6.45276 6.66017 7.40494 7.79839 8.18924 8.70385 8.90600 9.10580 9.62120 10.48568 Molecular weight = 336.10amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.002509 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.248016 B =11158.308852 C =11611.073495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.241 3.759 3 C 0.217 3.783 4 N -0.439 5.439 5 C -0.316 4.316 6 H 0.110 0.890 7 C 0.032 3.968 8 N -0.874 5.874 9 Si 0.928 3.072 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.283 1.283 13 C 0.461 3.539 14 O -0.572 6.572 15 C -0.131 4.131 16 C -0.581 4.581 17 S 2.406 3.594 18 O -0.933 6.933 19 O -0.931 6.931 20 C -0.572 4.572 21 C -0.089 4.089 22 C -0.103 4.103 23 C -0.120 4.120 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.103 4.103 27 H 0.131 0.869 28 H 0.086 0.914 29 H 0.274 0.726 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.299 20.116 -2.338 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.077 4.077 3 C 0.089 3.911 4 N -0.159 5.159 5 C -0.442 4.442 6 H 0.128 0.872 7 C -0.172 4.172 8 N -0.512 5.512 9 Si 0.755 3.245 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.209 1.209 13 C 0.249 3.751 14 O -0.455 6.455 15 C -0.173 4.173 16 C -0.711 4.711 17 S 2.590 3.410 18 O -0.930 6.930 19 O -0.928 6.928 20 C -0.698 4.698 21 C -0.090 4.090 22 C -0.122 4.122 23 C -0.138 4.138 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.122 4.122 27 H 0.148 0.852 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.414 20.118 -1.964 20.357 hybrid contribution 0.903 -1.284 -0.874 1.797 sum 3.317 18.833 -2.838 19.333 Atomic orbital electron populations 1.80913 1.13512 1.12084 1.08057 1.29264 0.95350 0.90272 0.92855 1.18813 0.81750 1.03351 0.87188 1.43638 1.56156 1.06978 1.09121 1.19768 1.30139 0.80334 1.13999 0.87207 1.25315 0.94947 0.99909 0.97013 1.69871 1.19719 1.30787 1.30850 0.85830 0.79536 0.80802 0.78359 1.19083 1.20362 1.20864 1.19674 0.84412 0.85024 0.86027 1.90532 1.50592 1.86018 1.18339 1.21360 1.04075 0.94366 0.97462 1.30021 1.13478 1.17318 1.10315 1.08591 0.76124 0.78427 0.77862 1.93572 1.66167 1.82475 1.50774 1.93594 1.30257 1.85906 1.83032 1.29388 1.12499 1.06787 1.21134 1.18959 0.94974 0.92871 1.02190 1.21199 0.99326 0.93950 0.97727 1.21178 0.97097 0.95489 1.00017 1.21273 0.93417 0.99980 0.98557 1.21186 0.99657 0.93777 0.99123 1.21212 0.95771 0.96114 0.99101 0.85174 0.89578 0.91514 0.88231 0.88708 0.84341 0.84193 0.83882 0.83851 0.85085 0.85452 0.85702 0.85452 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.17 18.54 42.15 0.78 -10.38 16 2 C 0.24 5.34 12.95 -20.76 -0.27 5.07 16 3 C 0.22 4.24 4.91 -6.83 -0.03 4.20 16 4 N -0.44 -9.99 2.60 -117.93 -0.31 -10.30 16 5 C -0.32 -7.91 9.32 -14.93 -0.14 -8.05 16 6 H 0.11 2.89 7.39 -52.49 -0.39 2.51 16 7 C 0.03 0.78 4.87 -17.47 -0.09 0.70 16 8 N -0.87 -21.68 9.48 55.50 0.53 -21.15 16 9 Si 0.93 19.17 29.60 -169.99 -5.03 14.14 16 10 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 13 C 0.46 10.01 7.57 -10.98 -0.08 9.92 16 14 O -0.57 -14.00 15.63 5.55 0.09 -13.92 16 15 C -0.13 -2.18 4.31 -27.89 -0.12 -2.30 16 16 C -0.58 -7.64 5.09 37.16 0.19 -7.45 16 17 S 2.41 29.73 4.70 -107.50 -0.51 29.23 16 18 O -0.93 -13.71 18.10 -57.83 -1.05 -14.76 16 19 O -0.93 -14.69 18.10 -57.83 -1.05 -15.73 16 20 C -0.57 -5.01 5.93 36.00 0.21 -4.79 16 21 C -0.09 -0.93 5.14 -104.63 -0.54 -1.47 16 22 C -0.10 -1.02 9.70 -39.58 -0.38 -1.40 16 23 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 24 C -0.11 -0.94 10.05 -39.59 -0.40 -1.34 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 26 C -0.10 -1.05 9.70 -39.59 -0.38 -1.44 16 27 H 0.13 2.57 6.46 -51.93 -0.34 2.24 16 28 H 0.09 1.27 6.68 -51.93 -0.35 0.93 16 29 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.10 1.37 7.42 -51.93 -0.39 0.99 16 31 H 0.09 1.59 7.51 -51.93 -0.39 1.20 16 32 H 0.14 1.72 8.10 -51.92 -0.42 1.30 16 33 H 0.14 1.59 8.10 -51.92 -0.42 1.17 16 34 H 0.14 0.92 8.09 -51.92 -0.42 0.50 16 35 H 0.14 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 364.13 15.07 5.49 5.49 Total: -1.00 -35.89 364.13 -8.66 -44.54 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.78 Total: 4.09 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.83 Total: -11.25 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 1.00 Total: -41.83 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -2.01 Total: -44.41 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Atomic # 16 Polarization: 29.73 SS G_CDS: -0.51 Total: 29.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.89 -8.66 -44.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002875963.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.018 kcal (2) G-P(sol) polarization free energy of solvation -35.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds