Wall clock time and date at job start Tue Mar 31 2020 05:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00227 * 2 1 4 4 H 1.48497 * 109.47134 * 269.99974 * 3 2 1 5 5 H 1.48499 * 109.46971 * 29.99791 * 3 2 1 6 6 H 1.48500 * 109.47184 * 149.99845 * 3 2 1 7 7 C 1.38690 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99917 * 0.02562 * 7 2 1 9 9 O 1.34911 * 119.99834 * 179.97438 * 7 2 1 10 10 C 1.35294 * 117.99859 * 179.97438 * 9 7 2 11 11 N 1.32803 * 119.98342 * 180.27524 * 10 9 7 12 12 C 1.32950 * 120.01504 * 180.27666 * 11 10 9 13 13 N 1.38015 * 120.00550 * 179.72512 * 12 11 10 14 14 C 1.46853 * 110.99876 * 123.94151 * 13 12 11 15 15 C 1.53034 * 109.51947 * 174.16025 * 14 13 12 16 16 C 1.53116 * 109.28290 * 59.17988 * 15 14 13 17 17 C 1.53124 * 109.15992 * 302.34351 * 16 15 14 18 18 C 1.46844 * 110.99869 * 359.73009 * 13 12 11 19 19 N 1.32935 * 119.98695 * 359.45759 * 12 11 10 20 20 C 1.32906 * 119.96423 * 0.26894 * 19 12 11 21 21 N 1.38011 * 120.01330 * 179.97438 * 20 19 12 22 22 C 1.47016 * 111.00009 * 303.64113 * 21 20 19 23 23 C 1.53095 * 109.25899 * 177.60491 * 22 21 20 24 24 O 1.43008 * 109.26103 * 56.84300 * 23 22 21 25 25 C 1.43016 * 113.74288 * 301.33248 * 24 23 22 26 26 C 1.47010 * 111.00532 * 180.02562 * 21 20 19 27 27 N 1.32775 * 119.98422 * 0.02562 * 10 9 7 28 28 H 0.97001 * 119.99886 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.45741 * 294.17514 * 14 13 12 30 30 H 1.08994 * 109.45902 * 54.14333 * 14 13 12 31 31 H 1.08998 * 109.50774 * 299.23455 * 15 14 13 32 32 H 1.09007 * 109.52996 * 179.13634 * 15 14 13 33 33 H 1.08992 * 109.52704 * 182.43701 * 16 15 14 34 34 H 1.09006 * 109.57716 * 62.27461 * 16 15 14 35 35 H 1.09005 * 109.50004 * 297.71544 * 17 16 15 36 36 H 1.08994 * 109.50631 * 177.59244 * 17 16 15 37 37 H 1.09000 * 109.46299 * 305.85264 * 18 13 12 38 38 H 1.08998 * 109.46010 * 65.83597 * 18 13 12 39 39 H 1.09003 * 109.50201 * 297.53711 * 22 21 20 40 40 H 1.09004 * 109.50673 * 57.66360 * 22 21 20 41 41 H 1.09000 * 109.50363 * 296.91073 * 23 22 21 42 42 H 1.08996 * 109.54160 * 176.80180 * 23 22 21 43 43 H 1.09004 * 109.50426 * 298.73643 * 25 24 23 44 44 H 1.09000 * 109.54688 * 178.62229 * 25 24 23 45 45 H 1.09008 * 109.50579 * 302.32835 * 26 21 20 46 46 H 1.09001 * 109.50375 * 62.45521 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0085 -1.2011 0.0005 8 1 1.4685 -2.1364 0.0005 9 8 3.3576 -1.2011 0.0000 10 6 3.9928 -2.3957 0.0011 11 7 5.3200 -2.4417 0.0062 12 6 5.9448 -3.6153 0.0017 13 7 7.3241 -3.6628 0.0012 14 6 7.8239 -4.4502 1.1356 15 6 9.3423 -4.6034 1.0222 16 6 9.9912 -3.2166 1.0141 17 6 9.4180 -2.4002 -0.1476 18 6 7.8972 -2.3108 -0.0004 19 7 5.2407 -4.7428 0.0030 20 6 3.9124 -4.6960 0.0035 21 7 3.1805 -5.8661 0.0043 22 6 3.5453 -6.7166 -1.1380 23 6 2.7553 -8.0260 -1.0653 24 8 1.3562 -7.7317 -1.0343 25 6 0.9657 -6.9057 0.0660 26 6 1.7375 -5.5849 0.0040 27 7 3.2888 -3.5215 0.0021 28 1 -0.4850 0.8401 -0.0004 29 1 7.5788 -3.9405 2.0674 30 1 7.3578 -5.4354 1.1272 31 1 9.5874 -5.1252 0.0972 32 1 9.7154 -5.1748 1.8722 33 1 11.0691 -3.3194 0.8900 34 1 9.7797 -2.7089 1.9553 35 1 9.6642 -2.8875 -1.0911 36 1 9.8445 -1.3973 -0.1331 37 1 7.4845 -1.7424 -0.8338 38 1 7.6520 -1.8114 0.9369 39 1 3.3075 -6.1992 -2.0675 40 1 4.6130 -6.9332 -1.1042 41 1 3.0331 -8.5689 -0.1618 42 1 2.9796 -8.6362 -1.9401 43 1 1.1915 -7.4160 1.0023 44 1 -0.1042 -6.7050 0.0096 45 1 1.4853 -4.9753 0.8718 46 1 1.4712 -5.0496 -0.9074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002879577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:02 Heat of formation + Delta-G solvation = 32.646675 kcal Electronic energy + Delta-G solvation = -30032.436358 eV Core-core repulsion = 25959.691042 eV Total energy + Delta-G solvation = -4072.745317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24820 -39.64719 -38.91786 -37.70520 -35.91764 -33.84677 -32.72588 -32.09924 -31.52884 -30.81531 -30.78183 -27.48935 -26.05812 -25.01842 -24.00930 -23.47270 -22.38697 -22.02637 -20.50994 -19.85807 -18.84750 -18.32607 -17.24510 -16.46544 -16.38484 -16.00588 -15.71942 -15.03140 -14.92515 -14.74897 -14.66348 -14.47408 -14.25342 -14.17553 -14.07275 -13.60692 -13.29400 -13.25679 -12.83567 -12.75383 -12.48728 -12.31180 -12.19870 -11.46954 -11.34547 -11.29369 -11.11040 -11.07086 -10.75438 -10.59662 -10.57821 -10.52955 -10.49378 -10.02248 -9.85429 -9.61215 -9.04957 -8.83030 -8.72659 -8.50987 -8.35468 -6.60494 -4.30561 1.58508 1.79648 3.01258 3.13540 3.16901 3.30861 3.51087 3.79864 3.87222 4.09977 4.40865 4.62538 4.72672 4.79525 4.81533 4.92602 4.95857 4.97618 5.11400 5.12891 5.23487 5.28448 5.32351 5.39633 5.54469 5.55685 5.63674 5.64797 5.65867 5.75865 5.80934 5.83299 5.92794 5.93157 6.04161 6.06736 6.18794 6.25920 6.34921 6.55060 6.66153 6.88563 7.10986 7.19489 7.56194 7.60554 7.79921 7.88512 8.65676 8.96512 9.39485 10.45061 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.006669 B = 0.005684 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4197.579810 B = 4925.179072 C = 8864.700699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.072 3.928 3 Si 0.899 3.101 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.373 4.373 8 H 0.124 0.876 9 O -0.175 6.175 10 C 0.543 3.457 11 N -0.626 5.626 12 C 0.571 3.429 13 N -0.453 5.453 14 C 0.069 3.931 15 C -0.116 4.116 16 C -0.125 4.125 17 C -0.119 4.119 18 C 0.069 3.931 19 N -0.625 5.625 20 C 0.571 3.429 21 N -0.456 5.456 22 C 0.033 3.967 23 C 0.066 3.934 24 O -0.386 6.386 25 C 0.063 3.937 26 C 0.033 3.967 27 N -0.632 5.632 28 H 0.284 0.716 29 H 0.042 0.958 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.917 -11.610 0.923 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.451 4.451 8 H 0.141 0.859 9 O -0.059 6.059 10 C 0.240 3.760 11 N -0.372 5.372 12 C 0.205 3.795 13 N -0.174 5.174 14 C -0.058 4.058 15 C -0.153 4.153 16 C -0.162 4.162 17 C -0.157 4.157 18 C -0.059 4.059 19 N -0.365 5.365 20 C 0.205 3.795 21 N -0.178 5.178 22 C -0.094 4.094 23 C -0.011 4.011 24 O -0.305 6.305 25 C -0.014 4.014 26 C -0.094 4.094 27 N -0.380 5.380 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.077 0.923 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.795 -11.532 0.801 17.244 hybrid contribution -0.102 1.704 0.205 1.720 sum 12.693 -9.828 1.005 16.085 Atomic orbital electron populations 1.69600 1.05468 1.28961 1.45413 1.24460 0.95059 0.98748 0.95218 0.86271 0.80579 0.81342 0.79437 1.19478 1.20236 1.18017 1.20923 0.74727 0.97740 1.51702 0.85852 1.83421 1.24338 1.21915 1.76208 1.20142 0.84479 0.84617 0.86762 1.67999 1.08943 1.28910 1.31369 1.20398 0.90284 0.83062 0.85708 1.58241 1.00256 1.16929 1.41943 1.22157 0.95770 0.98672 0.89165 1.21622 0.93532 0.97416 1.02778 1.21637 0.99810 0.95943 0.98836 1.21678 0.94314 1.00476 0.99224 1.22034 0.93707 0.86714 1.03401 1.68032 1.06431 1.30658 1.31389 1.20476 0.86026 0.87804 0.85180 1.58451 1.06487 1.11745 1.41112 1.22834 1.02524 0.93901 0.90152 1.22690 0.80898 0.94810 1.02738 1.87985 1.23721 1.69882 1.48872 1.22802 0.99495 0.89468 0.89590 1.22737 0.83739 0.97736 1.05182 1.68653 1.41056 0.98161 1.30132 0.90523 0.93991 0.88610 0.90741 0.90977 0.91657 0.92053 0.91051 0.90936 0.89104 0.92847 0.92967 0.87718 0.91990 0.87976 0.92271 0.87649 0.87937 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.03 13.96 55.48 0.77 -23.25 16 2 C 0.07 1.98 5.49 -17.52 -0.10 1.88 16 3 Si 0.90 21.21 28.62 -169.99 -4.86 16.34 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.26 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.37 -10.57 10.15 30.90 0.31 -10.26 16 8 H 0.12 3.67 7.04 -52.49 -0.37 3.30 16 9 O -0.17 -4.78 8.58 1.20 0.01 -4.77 16 10 C 0.54 13.64 8.52 -90.44 -0.77 12.87 16 11 N -0.63 -14.20 8.85 -15.52 -0.14 -14.34 16 12 C 0.57 11.31 7.19 -322.21 -2.32 8.99 16 13 N -0.45 -7.18 4.71 -175.29 -0.83 -8.01 16 14 C 0.07 0.90 5.33 -3.83 -0.02 0.88 16 15 C -0.12 -1.11 6.09 -26.65 -0.16 -1.28 16 16 C -0.12 -1.14 6.00 -26.61 -0.16 -1.30 16 17 C -0.12 -1.25 6.09 -26.64 -0.16 -1.41 16 18 C 0.07 0.99 4.64 -3.83 -0.02 0.97 16 19 N -0.62 -12.25 9.13 -14.78 -0.13 -12.38 16 20 C 0.57 11.70 7.19 -322.21 -2.32 9.38 16 21 N -0.46 -7.79 4.78 -174.95 -0.84 -8.62 16 22 C 0.03 0.46 5.50 -3.71 -0.02 0.44 16 23 C 0.07 0.76 7.01 37.21 0.26 1.02 16 24 O -0.39 -5.27 10.83 -35.23 -0.38 -5.65 16 25 C 0.06 0.83 7.01 37.21 0.26 1.09 16 26 C 0.03 0.55 4.81 -3.71 -0.02 0.53 16 27 N -0.63 -14.92 7.27 -15.52 -0.11 -15.04 16 28 H 0.28 7.29 8.31 -40.82 -0.34 6.96 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 1.30 7.58 -51.93 -0.39 0.91 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.46 7.71 -51.93 -0.40 1.06 16 38 H 0.05 0.82 8.11 -51.93 -0.42 0.40 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.43 7.70 -51.93 -0.40 1.03 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.10 1.84 7.86 -51.92 -0.41 1.43 16 46 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -31.12 369.12 -13.19 -44.31 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.02 Total: 2.04 kcal Atomic # 6 Polarization: 29.03 SS G_CDS: -5.22 Total: 23.81 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -1.27 Total: -81.64 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -0.37 Total: -10.42 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.86 Total: 16.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.12 -13.19 -44.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002879577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.956 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds