Wall clock time and date at job start Tue Mar 31 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35954 * 116.99481 * 2 1 4 4 C 1.38555 * 120.00238 * 359.71895 * 3 2 1 5 5 C 1.38542 * 120.41822 * 179.71872 * 4 3 2 6 6 C 1.37785 * 120.40868 * 0.56273 * 5 4 3 7 7 C 1.40019 * 119.98686 * 359.71894 * 6 5 4 8 8 C 1.46710 * 120.20167 * 179.97438 * 7 6 5 9 9 C 1.35845 * 120.00014 * 317.53699 * 8 7 6 10 10 S 1.77492 * 127.96457 * 171.81768 * 9 8 7 11 11 C 1.77228 * 94.56967 * 179.97438 * 10 9 8 12 12 S 1.71196 * 126.55339 * 180.02562 * 11 10 9 13 13 N 1.33797 * 106.88672 * 0.30088 * 11 10 9 14 14 C 1.32261 * 119.52196 * 359.77558 * 13 11 10 15 15 O 1.21720 * 122.51971 * 179.97438 * 14 13 11 16 16 C 1.39204 * 119.99890 * 179.97438 * 3 2 1 17 17 O 1.35566 * 120.20183 * 359.97438 * 16 3 2 18 18 C 1.34739 * 116.99859 * 90.00542 * 17 16 3 19 19 H 1.08000 * 120.00334 * 359.97438 * 18 17 16 20 20 C 1.38692 * 120.00084 * 179.97438 * 18 17 16 21 21 N 1.31536 * 119.99554 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00148 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47194 * 60.00445 * 22 20 18 24 24 H 1.48503 * 109.47291 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47347 * 300.00188 * 22 20 18 26 26 H 1.09000 * 109.47369 * 60.00646 * 1 2 3 27 27 H 1.09001 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47929 * 299.99972 * 1 2 3 29 29 H 1.08003 * 119.78590 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.79703 * 180.25862 * 5 4 3 31 31 H 1.08001 * 120.00509 * 179.74346 * 6 5 4 32 32 H 1.08000 * 119.99712 * 137.53977 * 8 7 6 33 33 H 0.97001 * 120.23461 * 179.78930 * 13 11 10 34 34 H 0.97001 * 119.99331 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2914 2.3734 -0.0059 5 6 1.9113 3.6124 -0.0001 6 6 3.2860 3.7045 0.0000 7 6 4.0653 2.5412 0.0001 8 6 5.5295 2.6337 -0.0005 9 6 6.1524 3.5425 -0.7952 10 16 7.8741 3.9731 -0.8198 11 6 7.7014 5.1714 -2.1141 12 16 8.9512 6.1207 -2.7980 13 7 6.4066 5.1966 -2.4503 14 6 5.5557 4.3990 -1.8265 15 8 4.3672 4.3774 -2.0880 16 6 3.4362 1.2844 0.0005 17 8 4.1786 0.1501 0.0016 18 6 4.5142 -0.3624 -1.1985 19 1 4.1922 0.1289 -2.1047 20 6 5.2732 -1.5210 -1.2701 21 7 5.6650 -2.1198 -0.1663 22 14 5.7379 -2.2320 -2.9337 23 1 6.5335 -1.2345 -3.6935 24 1 6.5441 -3.4636 -2.7381 25 1 4.5050 -2.5633 -3.6923 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2131 2.3128 -0.0100 30 1 1.3132 4.5117 -0.0005 31 1 3.7624 4.6737 0.0003 32 1 6.1121 1.9793 0.6310 33 1 6.0943 5.7954 -3.1466 34 1 6.1955 -2.9303 -0.2164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002910320.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:18 Heat of formation + Delta-G solvation = -1.504333 kcal Electronic energy + Delta-G solvation = -24079.140562 eV Core-core repulsion = 20391.023824 eV Total energy + Delta-G solvation = -3688.116738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.027 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.34354 -39.90943 -37.69597 -37.00180 -36.27800 -33.73931 -32.14477 -29.42752 -29.35356 -27.08157 -26.97928 -25.44934 -24.83498 -22.04640 -21.81505 -19.81939 -19.32442 -18.53322 -18.06452 -17.21939 -16.57658 -16.31288 -16.10567 -16.02976 -15.33431 -15.21407 -14.74316 -14.47351 -14.10579 -13.86626 -13.35711 -13.32831 -12.85217 -12.39142 -12.11654 -12.03504 -11.83541 -11.60007 -11.50055 -11.29697 -11.13354 -10.97472 -10.73103 -10.50355 -10.41949 -10.15823 -9.85324 -9.33967 -8.54470 -8.40472 -8.10724 -7.68770 -7.57559 -6.26280 -3.93599 -0.54295 0.52163 0.69497 1.38940 1.50680 1.75624 1.88060 2.50148 2.65730 3.17343 3.20234 3.22161 3.64912 3.89204 3.91430 4.19760 4.83692 5.03981 5.06559 5.07456 5.28611 5.35080 5.37008 5.47356 5.58253 5.65814 5.67280 5.74781 5.88648 6.09611 6.39214 6.53958 6.59903 6.72271 6.98370 7.22814 7.23410 7.79858 8.10783 9.16289 9.81309 10.91611 Molecular weight = 337.03amu Principal moments of inertia in cm(-1) A = 0.010437 B = 0.004732 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.013953 B = 5916.021718 C = 7828.928263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.289 6.289 3 C 0.084 3.916 4 C -0.175 4.175 5 C -0.122 4.122 6 C -0.067 4.067 7 C -0.119 4.119 8 C 0.168 3.832 9 C -0.311 4.311 10 S 0.141 5.859 11 C 0.278 3.722 12 S -0.418 6.418 13 N -0.616 5.616 14 C 0.542 3.458 15 O -0.448 6.448 16 C 0.161 3.839 17 O -0.223 6.223 18 C -0.362 4.362 19 H 0.069 0.931 20 C 0.037 3.963 21 N -0.873 5.873 22 Si 0.927 3.073 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.274 1.274 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.164 0.836 33 H 0.429 0.571 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.642 10.922 1.051 11.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.202 6.202 3 C 0.038 3.962 4 C -0.194 4.194 5 C -0.140 4.140 6 C -0.086 4.086 7 C -0.123 4.123 8 C 0.142 3.858 9 C -0.428 4.428 10 S 0.379 5.621 11 C -0.076 4.076 12 S -0.286 6.286 13 N -0.260 5.260 14 C 0.328 3.672 15 O -0.321 6.321 16 C 0.113 3.887 17 O -0.135 6.135 18 C -0.438 4.438 19 H 0.087 0.913 20 C -0.165 4.165 21 N -0.512 5.512 22 Si 0.753 3.247 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.200 1.200 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.181 0.819 33 H 0.271 0.729 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.235 10.539 1.438 11.118 hybrid contribution -2.078 -0.070 -1.753 2.719 sum -5.312 10.469 -0.315 11.744 Atomic orbital electron populations 1.23010 0.79926 1.03554 1.00453 1.86345 1.19732 1.25672 1.88419 1.19587 0.92141 0.84719 0.99729 1.21249 0.99628 0.92146 1.06389 1.20550 0.94142 0.96574 1.02724 1.20834 0.93404 0.96140 0.98189 1.18982 0.91466 0.93171 1.08646 1.22106 0.93545 0.84323 0.85798 1.23612 0.97545 1.12144 1.09524 1.86147 1.05033 1.36046 1.34833 1.28411 0.90324 0.94805 0.94015 1.93044 1.33481 1.42714 1.59315 1.43539 1.07200 1.38211 1.37024 1.18129 0.86612 0.79918 0.82502 1.91017 1.12822 1.64027 1.64209 1.18572 0.87252 0.87792 0.95043 1.83794 1.66617 1.33735 1.29401 1.20867 1.32438 1.09251 0.81263 0.91336 1.25000 0.97300 0.95733 0.98425 1.69987 1.36023 1.18903 1.26312 0.85998 0.78770 0.78767 0.81167 1.19906 1.20339 1.19951 0.93280 0.88563 0.93240 0.85682 0.86054 0.86482 0.81919 0.72882 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.29 -5.76 10.28 -34.14 -0.35 -6.11 16 3 C 0.08 1.65 6.70 -39.11 -0.26 1.39 16 4 C -0.17 -2.71 9.03 -39.35 -0.36 -3.07 16 5 C -0.12 -1.77 10.02 -39.63 -0.40 -2.17 16 6 C -0.07 -1.05 6.97 -39.08 -0.27 -1.32 16 7 C -0.12 -2.17 5.25 -104.94 -0.55 -2.72 16 8 C 0.17 2.77 9.39 -37.02 -0.35 2.42 16 9 C -0.31 -4.63 6.33 -37.01 -0.23 -4.87 16 10 S 0.14 1.83 23.18 -107.50 -2.49 -0.66 16 11 C 0.28 3.68 7.98 53.62 0.43 4.11 16 12 S -0.42 -6.19 31.19 -107.50 -3.35 -9.54 16 13 N -0.62 -7.67 5.14 -13.27 -0.07 -7.74 16 14 C 0.54 7.97 7.41 -13.94 -0.10 7.86 16 15 O -0.45 -7.46 13.89 5.17 0.07 -7.39 16 16 C 0.16 3.48 5.63 -38.35 -0.22 3.27 16 17 O -0.22 -5.84 8.92 -13.67 -0.12 -5.96 16 18 C -0.36 -9.79 9.81 30.90 0.30 -9.49 16 19 H 0.07 1.83 7.76 -52.49 -0.41 1.43 16 20 C 0.04 0.99 5.49 -17.51 -0.10 0.90 16 21 N -0.87 -24.99 13.67 55.48 0.76 -24.23 16 22 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H 0.05 0.57 7.64 -51.93 -0.40 0.18 16 27 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 29 H 0.13 1.55 6.27 -52.48 -0.33 1.22 16 30 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.12 1.65 6.71 -52.49 -0.35 1.30 16 32 H 0.16 2.59 8.06 -52.49 -0.42 2.16 16 33 H 0.43 4.43 8.91 -40.82 -0.36 4.06 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 334.48 15.07 5.04 5.04 Total: -1.00 -31.88 334.48 -9.30 -41.19 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -2.65 Total: 1.87 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -1.11 Total: -2.36 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: 0.69 Total: -31.97 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.40 Total: -19.46 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -4.36 SS G_CDS: -5.85 Total: -10.20 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.88 -9.30 -41.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002910320.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.681 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds