Wall clock time and date at job start Tue Mar 31 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86803 * 119.99851 * 2 1 4 4 H 1.48496 * 109.47491 * 240.00093 * 3 2 1 5 5 H 1.48498 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00199 * 3 2 1 7 7 C 1.38795 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99890 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99644 * 0.27758 * 7 2 1 10 10 C 1.76201 * 99.99986 * 179.72355 * 9 7 2 11 11 N 1.32022 * 118.61945 * 359.97438 * 10 9 7 12 12 C 1.34041 * 120.41231 * 180.02562 * 11 10 9 13 13 C 1.40204 * 121.91592 * 179.97438 * 12 11 10 14 14 C 1.36334 * 119.58420 * 180.02562 * 13 12 11 15 15 C 1.39193 * 121.00896 * 359.97438 * 14 13 12 16 16 C 1.36442 * 120.90287 * 0.02562 * 15 14 13 17 17 C 1.39855 * 119.53446 * 0.02562 * 16 15 14 18 18 C 1.41776 * 122.01406 * 179.97438 * 17 16 15 19 19 N 1.37857 * 120.84707 * 0.02562 * 18 17 16 20 20 C 1.46499 * 120.00203 * 180.02562 * 19 18 17 21 21 C 1.50701 * 109.47597 * 180.02562 * 20 19 18 22 22 C 1.38237 * 119.99549 * 269.72963 * 21 20 19 23 23 C 1.38236 * 119.99722 * 179.76614 * 22 21 20 24 24 C 1.38229 * 119.99837 * 0.50257 * 23 22 21 25 25 C 1.38236 * 120.00072 * 359.74631 * 24 23 22 26 26 C 1.38229 * 120.00147 * 89.99837 * 21 20 19 27 27 N 1.32451 * 118.30602 * 179.75815 * 18 17 16 28 28 H 0.96996 * 120.00417 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.20560 * 0.03688 * 13 12 11 30 30 H 1.07994 * 119.49310 * 179.97438 * 14 13 12 31 31 H 1.08000 * 119.54266 * 180.02562 * 15 14 13 32 32 H 1.08005 * 120.23545 * 179.97438 * 16 15 14 33 33 H 0.97004 * 120.00267 * 0.02562 * 19 18 17 34 34 H 1.09006 * 109.47160 * 300.00709 * 20 19 18 35 35 H 1.09000 * 109.47361 * 60.00114 * 20 19 18 36 36 H 1.07998 * 119.99997 * 359.97438 * 22 21 20 37 37 H 1.08002 * 120.00044 * 180.22824 * 23 22 21 38 38 H 1.07999 * 119.99960 * 179.72662 * 24 23 22 39 39 H 1.08006 * 119.99671 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.00089 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6966 -1.2125 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0096 -1.2020 -0.0005 8 1 3.0896 -1.2019 -0.0010 9 16 1.1286 -2.7279 -0.0086 10 6 2.4784 -3.8604 -0.0146 11 7 3.7078 -3.3791 -0.0125 12 6 4.7610 -4.2081 -0.0174 13 6 6.0795 -3.7314 -0.0160 14 6 7.1156 -4.6175 -0.0217 15 6 6.8852 -5.9902 -0.0284 16 6 5.6146 -6.4875 -0.0300 17 6 4.5292 -5.6056 -0.0253 18 6 3.1878 -6.0647 -0.0272 19 7 2.9023 -7.4134 -0.0333 20 6 1.5094 -7.8673 -0.0357 21 6 1.4719 -9.3738 -0.0418 22 6 1.4495 -10.0598 -1.2418 23 6 1.4200 -11.4418 -1.2474 24 6 1.4023 -12.1375 -0.0531 25 6 1.4194 -11.4514 1.1469 26 6 1.4541 -10.0696 1.1525 27 7 2.2160 -5.1648 -0.0176 28 1 -0.4850 0.8400 0.0004 29 1 6.2732 -2.6690 -0.0102 30 1 8.1306 -4.2487 -0.0210 31 1 7.7237 -6.6709 -0.0324 32 1 5.4482 -7.5546 -0.0356 33 1 3.6237 -8.0619 -0.0359 34 1 1.0044 -7.4951 0.8557 35 1 1.0050 -7.4874 -0.9242 36 1 1.4586 -9.5160 -2.1748 37 1 1.4063 -11.9778 -2.1849 38 1 1.3747 -13.2172 -0.0574 39 1 1.4051 -11.9951 2.0800 40 1 1.4668 -9.5335 2.0900 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002932969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:47 Heat of formation + Delta-G solvation = 87.358331 kcal Electronic energy + Delta-G solvation = -24543.958942 eV Core-core repulsion = 21028.210567 eV Total energy + Delta-G solvation = -3515.748375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.54424 -39.53301 -37.12996 -36.15553 -32.98663 -32.66459 -31.23654 -31.16584 -30.52718 -29.28471 -26.15402 -25.59680 -24.05850 -23.29351 -22.83173 -21.52478 -21.20021 -19.09078 -17.78438 -17.47790 -16.95887 -16.67586 -15.58016 -15.53240 -15.02454 -14.93861 -14.73456 -14.58500 -14.48919 -13.96212 -13.69988 -13.46345 -13.15198 -13.10927 -12.95453 -12.74448 -11.97171 -11.87702 -11.50246 -11.37412 -11.28718 -11.11626 -11.09032 -11.05136 -10.88373 -10.29216 -9.69707 -9.38748 -9.19608 -9.14344 -8.99509 -8.83923 -8.72573 -8.23660 -7.61550 -6.70794 -6.46407 -4.15156 0.97470 0.97966 1.13075 1.35332 2.56483 2.83106 3.20815 3.21771 3.23554 3.31160 3.49456 3.69273 4.03428 4.45506 4.61335 4.72938 4.73605 4.81856 4.86500 4.95610 5.00945 5.06519 5.18703 5.20550 5.23233 5.40617 5.44303 5.53353 5.59961 5.72678 5.75931 5.80667 5.87363 6.08808 6.16890 6.23088 6.37906 6.38197 6.53490 6.70103 6.72994 6.76706 7.08614 7.19273 7.46459 7.60315 8.06902 8.46133 9.03322 9.06793 10.60871 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.012613 B = 0.003056 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.354950 B = 9161.263895 C =11076.126942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.075 3.925 3 Si 0.932 3.068 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.539 4.539 8 H 0.112 0.888 9 S 0.181 5.819 10 C 0.312 3.688 11 N -0.556 5.556 12 C 0.214 3.786 13 C -0.123 4.123 14 C -0.078 4.078 15 C -0.171 4.171 16 C -0.057 4.057 17 C -0.228 4.228 18 C 0.471 3.529 19 N -0.703 5.703 20 C 0.171 3.829 21 C -0.105 4.105 22 C -0.100 4.100 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.100 4.100 27 N -0.580 5.580 28 H 0.275 0.725 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.406 0.594 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.806 -21.121 -0.119 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.135 4.135 3 Si 0.757 3.243 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.688 4.688 8 H 0.129 0.871 9 S 0.428 5.572 10 C -0.059 4.059 11 N -0.281 5.281 12 C 0.079 3.921 13 C -0.144 4.144 14 C -0.099 4.099 15 C -0.192 4.192 16 C -0.077 4.077 17 C -0.241 4.241 18 C 0.210 3.790 19 N -0.339 5.339 20 C 0.047 3.953 21 C -0.106 4.106 22 C -0.118 4.118 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.118 4.118 27 N -0.310 5.310 28 H 0.085 0.915 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.243 0.757 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.218 -20.221 -0.109 20.656 hybrid contribution 2.790 0.139 -0.008 2.794 sum 7.008 -20.082 -0.117 21.270 Atomic orbital electron populations 1.69932 1.06210 1.28640 1.45925 1.25168 0.95105 0.99803 0.93429 0.85995 0.79133 0.79745 0.79421 1.19470 1.20828 1.19471 1.23572 0.98120 0.89902 1.57178 0.87053 1.83620 1.00072 0.94810 1.78726 1.25865 0.97128 0.91295 0.91572 1.69425 0.97632 1.35910 1.25109 1.18913 0.94135 0.87916 0.91131 1.20636 0.90072 1.00299 1.03407 1.20799 0.98632 0.93170 0.97304 1.20548 0.96363 0.95354 1.06904 1.20512 0.92304 0.97787 0.97142 1.18783 0.92998 0.95992 1.16317 1.18546 0.88393 0.85590 0.86501 1.44220 1.07747 1.02388 1.79532 1.20171 0.82967 0.88322 1.03794 1.20015 1.01728 0.95311 0.93514 1.21177 0.98557 0.94321 0.97763 1.21174 1.00553 0.94237 0.98226 1.21207 0.99629 0.99924 0.92653 1.21175 1.00549 0.94291 0.98173 1.21173 0.98556 0.94260 0.97828 1.68000 1.34276 1.01725 1.26985 0.91512 0.85117 0.86148 0.86548 0.86946 0.75669 0.90384 0.90390 0.85717 0.85954 0.86114 0.85954 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.64 13.22 55.49 0.73 -23.91 16 2 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -15.20 9.23 30.94 0.29 -14.92 16 8 H 0.11 3.19 6.48 -52.49 -0.34 2.85 16 9 S 0.18 4.75 21.82 -107.50 -2.35 2.41 16 10 C 0.31 7.63 7.83 -90.87 -0.71 6.92 16 11 N -0.56 -13.55 8.40 -11.50 -0.10 -13.65 16 12 C 0.21 4.44 6.61 -84.86 -0.56 3.88 16 13 C -0.12 -2.15 10.01 -39.53 -0.40 -2.54 16 14 C -0.08 -1.08 9.95 -39.91 -0.40 -1.47 16 15 C -0.17 -2.19 9.96 -39.87 -0.40 -2.59 16 16 C -0.06 -0.79 9.53 -39.62 -0.38 -1.17 16 17 C -0.23 -4.12 5.76 -106.63 -0.61 -4.73 16 18 C 0.47 8.51 7.55 -155.07 -1.17 7.34 16 19 N -0.70 -9.41 5.61 -61.15 -0.34 -9.75 16 20 C 0.17 2.10 5.85 -5.19 -0.03 2.07 16 21 C -0.11 -1.06 5.25 -104.62 -0.55 -1.61 16 22 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 23 C -0.12 -1.00 10.05 -39.59 -0.40 -1.39 16 24 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 25 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 26 C -0.10 -0.92 9.70 -39.59 -0.38 -1.30 16 27 N -0.58 -12.52 9.60 -12.39 -0.12 -12.64 16 28 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.11 1.20 6.57 -52.48 -0.34 0.86 16 33 H 0.41 4.44 6.70 -40.82 -0.27 4.17 16 34 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -32.02 360.79 -13.05 -45.07 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.32 Total: 4.34 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -6.98 Total: -13.55 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: 0.17 Total: -59.94 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -2.35 Total: 2.41 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.02 -13.05 -45.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002932969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.427 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds