Wall clock time and date at job start Tue Mar 31 2020 05:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34563 * 125.42713 * 2 1 4 4 C 1.46551 * 106.49081 * 180.26434 * 3 2 1 5 5 C 1.47246 * 127.01442 * 179.72384 * 4 3 2 6 6 O 1.21905 * 120.00508 * 180.02562 * 5 4 3 7 7 C 1.41621 * 119.99804 * 0.04685 * 5 4 3 8 8 H 1.08001 * 119.99849 * 0.02562 * 7 5 4 9 9 C 1.40303 * 120.00218 * 179.97438 * 7 5 4 10 10 N 1.30549 * 119.99692 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00287 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46950 * 90.00412 * 11 9 7 13 13 H 1.48498 * 109.47028 * 210.00137 * 11 9 7 14 14 H 1.48495 * 109.46908 * 330.00313 * 11 9 7 15 15 C 1.38572 * 105.97668 * 359.76317 * 4 3 2 16 16 C 1.50705 * 125.94230 * 179.97438 * 15 4 3 17 17 N 1.34814 * 108.10531 * 359.97438 * 15 4 3 18 18 C 1.40115 * 124.86043 * 179.97438 * 17 15 4 19 19 C 1.38873 * 120.06635 * 64.99809 * 18 17 15 20 20 C 1.38091 * 119.92914 * 180.02562 * 19 18 17 21 21 C 1.38315 * 120.07009 * 359.97438 * 20 19 18 22 22 C 1.38264 * 120.13198 * 0.02562 * 21 20 19 23 23 C 1.50703 * 119.96323 * 179.97438 * 22 21 20 24 24 F 1.39905 * 109.47157 * 0.02562 * 23 22 21 25 25 F 1.39900 * 109.47159 * 240.00345 * 23 22 21 26 26 F 1.39897 * 109.47274 * 120.00036 * 23 22 21 27 27 C 1.38130 * 120.06982 * 0.23294 * 22 21 20 28 28 H 1.08996 * 109.47167 * 270.14017 * 1 2 3 29 29 H 1.08995 * 109.47184 * 30.14523 * 1 2 3 30 30 H 1.09002 * 109.46750 * 150.14432 * 1 2 3 31 31 H 1.08005 * 126.75488 * 359.97438 * 3 2 1 32 32 H 0.97002 * 120.00258 * 179.97438 * 10 9 7 33 33 H 1.08998 * 109.46842 * 269.99380 * 16 15 4 34 34 H 1.08992 * 109.47288 * 30.00104 * 16 15 4 35 35 H 1.09000 * 109.46506 * 150.00108 * 16 15 4 36 36 H 1.08000 * 120.03885 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.96885 * 179.97438 * 20 19 18 38 38 H 1.07993 * 119.93289 * 180.02562 * 21 20 19 39 39 H 1.08003 * 120.03345 * 179.72370 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2870 1.0965 0.0000 4 6 3.6732 0.6209 -0.0065 5 6 4.8932 1.4454 -0.0145 6 8 5.9894 0.9120 -0.0198 7 6 4.7931 2.8580 -0.0157 8 1 3.8220 3.3306 -0.0102 9 6 5.9556 3.6437 -0.0228 10 7 7.1294 3.0724 -0.0289 11 14 5.8236 5.5070 -0.0250 12 1 5.7958 6.0029 1.3745 13 1 6.9945 6.0853 -0.7319 14 1 4.5756 5.9140 -0.7192 15 6 3.6017 -0.7630 -0.0044 16 6 4.7745 -1.7094 -0.0098 17 7 2.3004 -1.1152 0.0032 18 6 1.8278 -2.4342 0.0069 19 6 2.0774 -3.2597 1.0954 20 6 1.6107 -4.5594 1.0959 21 6 0.8949 -5.0390 0.0140 22 6 0.6447 -4.2195 -1.0712 23 6 -0.1351 -4.7463 -2.2482 24 9 -0.4951 -6.0773 -2.0112 25 9 0.6546 -4.6745 -3.4007 26 9 -1.2895 -3.9760 -2.4252 27 6 1.1135 -2.9202 -1.0799 28 1 -0.3633 0.0025 1.0276 29 1 -0.3633 0.8886 -0.5161 30 1 -0.3633 -0.8913 -0.5116 31 1 1.9566 2.1247 -0.0004 32 1 7.9331 3.6155 -0.0342 33 1 5.0514 -1.9388 -1.0387 34 1 5.6189 -1.2444 0.4988 35 1 4.5011 -2.6295 0.5067 36 1 2.6360 -2.8857 1.9407 37 1 1.8049 -5.2020 1.9419 38 1 0.5306 -6.0557 0.0168 39 1 0.9216 -2.2820 -1.9297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003193522.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:42 Heat of formation + Delta-G solvation = -120.734107 kcal Electronic energy + Delta-G solvation = -28527.526112 eV Core-core repulsion = 23985.851809 eV Total energy + Delta-G solvation = -4541.674303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.103 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.44239 -47.97236 -47.88234 -41.26830 -39.09296 -36.25520 -33.18276 -32.68343 -32.18119 -31.78241 -29.03470 -28.72983 -26.67064 -26.39382 -23.95393 -23.25192 -22.53865 -21.09109 -19.80947 -18.80812 -18.75223 -18.62604 -17.35077 -16.69111 -16.39053 -15.89001 -15.64802 -14.97430 -14.80448 -14.73004 -14.37447 -14.33632 -14.05637 -14.04589 -14.00859 -13.61469 -13.33852 -13.11920 -13.00390 -12.89240 -12.79443 -12.58990 -12.08010 -11.98539 -11.84909 -11.70470 -11.66585 -11.28770 -11.21836 -10.88389 -10.71401 -10.27523 -10.06022 -9.63173 -9.38789 -8.87042 -7.82846 -7.33705 -7.13523 -6.17737 -4.74854 0.49879 0.74795 2.30556 2.58480 3.04362 3.07934 3.09677 3.18897 3.22724 3.30145 3.41714 3.75185 4.10023 4.12345 4.43811 4.56662 4.63418 4.72251 4.90213 4.95471 5.22105 5.36016 5.43960 5.62691 5.66805 5.72364 5.79441 5.85536 5.90268 5.96474 6.00948 6.20411 6.22780 6.30480 6.56619 6.78563 6.82703 6.98442 7.35238 7.69450 7.77768 7.96828 8.22153 8.93305 9.03855 10.45510 10.70117 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.021276 B = 0.002779 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.739653 B =10071.984977 C =10419.326599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.017 4.017 3 C -0.146 4.146 4 C -0.173 4.173 5 C 0.420 3.580 6 O -0.548 6.548 7 C -0.514 4.514 8 H 0.070 0.930 9 C 0.081 3.919 10 N -0.741 5.741 11 Si 0.903 3.097 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.262 1.262 15 C 0.041 3.959 16 C -0.077 4.077 17 N -0.413 5.413 18 C 0.140 3.860 19 C -0.082 4.082 20 C -0.107 4.107 21 C -0.076 4.076 22 C -0.174 4.174 23 C 0.511 3.489 24 F -0.177 7.177 25 F -0.174 7.174 26 F -0.175 7.175 27 C -0.067 4.067 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.142 0.858 32 H 0.271 0.729 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.963 -15.197 0.305 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.121 4.121 3 C -0.171 4.171 4 C -0.180 4.180 5 C 0.316 3.684 6 O -0.438 6.438 7 C -0.546 4.546 8 H 0.088 0.912 9 C -0.142 4.142 10 N -0.370 5.370 11 Si 0.728 3.272 12 H -0.196 1.196 13 H -0.203 1.203 14 H -0.186 1.186 15 C -0.067 4.067 16 C -0.135 4.135 17 N -0.092 5.092 18 C 0.049 3.951 19 C -0.102 4.102 20 C -0.125 4.125 21 C -0.094 4.094 22 C -0.176 4.176 23 C 0.457 3.543 24 F -0.158 7.158 25 F -0.155 7.155 26 F -0.157 7.157 27 C -0.087 4.087 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.160 0.840 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.063 0.937 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.390 -15.749 0.261 21.335 hybrid contribution -0.446 0.943 -0.268 1.077 sum -14.836 -14.806 -0.007 20.960 Atomic orbital electron populations 1.20251 0.88829 1.02458 1.01951 1.20164 0.92682 0.85210 1.14067 1.21940 0.92185 0.96718 1.06226 1.22747 0.96421 0.91143 1.07701 1.17355 0.84610 0.88243 0.78190 1.90476 1.28244 1.75316 1.49799 1.20787 0.93322 0.92983 1.47478 0.91188 1.25978 0.94947 1.00441 0.92785 1.69978 0.98260 1.36851 1.31959 0.86431 0.78819 0.82960 0.79025 1.19556 1.20346 1.18613 1.20988 0.82567 0.95063 1.08054 1.20382 0.95309 0.95427 1.02338 1.40867 1.05804 1.01883 1.60600 1.17567 0.98321 0.85261 0.93905 1.21604 0.97683 0.93819 0.97059 1.21074 0.97646 0.95171 0.98608 1.21069 0.96538 0.99818 0.91966 1.19779 1.05539 0.96343 0.95918 1.18208 0.77828 0.75331 0.82937 1.93164 1.92309 1.35975 1.94364 1.93244 1.74001 1.95993 1.52287 1.93229 1.51351 1.75211 1.95874 1.20953 0.96165 0.93831 0.97743 0.91805 0.90375 0.92673 0.84010 0.91810 0.91833 0.87829 0.93680 0.84171 0.83951 0.84006 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.03 36.01 0.36 -0.64 16 2 C -0.02 -0.30 6.76 -81.65 -0.55 -0.85 16 3 C -0.15 -3.00 10.39 -37.53 -0.39 -3.39 16 4 C -0.17 -4.19 6.30 -102.76 -0.65 -4.83 16 5 C 0.42 12.08 6.92 -34.63 -0.24 11.84 16 6 O -0.55 -17.20 13.45 5.00 0.07 -17.14 16 7 C -0.51 -14.48 9.04 -37.52 -0.34 -14.82 16 8 H 0.07 1.83 7.03 -52.49 -0.37 1.46 16 9 C 0.08 2.21 5.50 -17.32 -0.10 2.11 16 10 N -0.74 -21.56 11.73 55.56 0.65 -20.91 16 11 Si 0.90 19.67 29.56 -169.99 -5.03 14.65 16 12 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 15 C 0.04 0.86 6.86 -81.16 -0.56 0.31 16 16 C -0.08 -1.48 9.53 36.01 0.34 -1.13 16 17 N -0.41 -7.23 2.74 -52.06 -0.14 -7.37 16 18 C 0.14 1.95 4.88 -83.61 -0.41 1.54 16 19 C -0.08 -0.95 8.62 -39.40 -0.34 -1.28 16 20 C -0.11 -0.91 10.04 -39.61 -0.40 -1.31 16 21 C -0.08 -0.66 9.43 -39.54 -0.37 -1.03 16 22 C -0.17 -1.84 5.37 -104.65 -0.56 -2.40 16 23 C 0.51 5.31 3.32 36.01 0.12 5.43 16 24 F -0.18 -1.70 15.97 2.25 0.04 -1.66 16 25 F -0.17 -2.01 17.23 2.25 0.04 -1.97 16 26 F -0.18 -1.90 17.24 2.25 0.04 -1.87 16 27 C -0.07 -0.84 8.18 -39.40 -0.32 -1.16 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.65 6.67 -51.93 -0.35 0.31 16 31 H 0.14 2.73 7.56 -52.48 -0.40 2.33 16 32 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.10 2.27 6.53 -51.93 -0.34 1.93 16 35 H 0.04 0.70 6.68 -51.93 -0.35 0.35 16 36 H 0.14 1.59 8.05 -52.49 -0.42 1.17 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.14 0.91 7.15 -52.49 -0.38 0.54 16 39 H 0.14 1.77 8.05 -52.48 -0.42 1.34 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -33.19 348.90 -7.32 -40.51 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -3.84 Total: 2.12 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -4.40 Total: -11.62 kcal Atomic # 7 Polarization: -28.79 SS G_CDS: 0.51 Total: -28.28 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.07 Total: -17.14 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.11 Total: -5.49 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.19 -7.32 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003193522.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.228 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds