Wall clock time and date at job start Tue Mar 31 2020 05:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 120.00379 * 2 1 4 4 C 1.50693 * 109.47256 * 270.00344 * 3 2 1 5 5 H 1.08009 * 120.00061 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00142 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00098 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00248 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46793 * 89.99960 * 8 6 4 10 10 H 1.48493 * 109.47088 * 209.99975 * 8 6 4 11 11 H 1.48500 * 109.47110 * 330.00110 * 8 6 4 12 12 C 1.34775 * 120.00059 * 180.02562 * 2 1 3 13 13 O 1.21282 * 120.00577 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99768 * 359.97438 * 12 2 1 15 15 S 1.81002 * 109.47349 * 180.02562 * 14 12 2 16 16 C 1.76199 * 100.00182 * 180.02562 * 15 14 12 17 17 N 1.31398 * 126.36095 * 359.69345 * 16 15 14 18 18 N 1.28499 * 110.15316 * 179.82104 * 17 16 15 19 19 C 1.31514 * 109.94444 * 0.44771 * 18 17 16 20 20 C 1.47119 * 126.49773 * 179.70831 * 19 18 17 21 21 C 1.36260 * 125.96500 * 344.74031 * 20 19 18 22 22 C 1.40824 * 106.72607 * 179.88542 * 21 20 19 23 23 C 1.34786 * 107.07506 * 0.38158 * 22 21 20 24 24 O 1.34326 * 108.72530 * 359.76313 * 23 22 21 25 25 N 1.36683 * 126.35821 * 179.97438 * 16 15 14 26 26 N 1.36594 * 127.19291 * 0.02562 * 25 16 15 27 27 H 1.08998 * 109.47189 * 270.00011 * 1 2 3 28 28 H 1.09007 * 109.47038 * 29.99516 * 1 2 3 29 29 H 1.08995 * 109.47292 * 149.99992 * 1 2 3 30 30 H 1.08996 * 109.46764 * 30.00230 * 3 2 1 31 31 H 1.09001 * 109.47196 * 150.00033 * 3 2 1 32 32 H 0.96995 * 120.00333 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.46867 * 60.00428 * 14 12 2 34 34 H 1.09000 * 109.47235 * 300.00468 * 14 12 2 35 35 H 1.08005 * 126.63335 * 0.03013 * 21 20 19 36 36 H 1.08003 * 126.46488 * 180.16140 * 22 21 20 37 37 H 1.08007 * 125.64062 * 179.73324 * 23 22 21 38 38 H 1.00904 * 111.00393 * 90.02439 * 26 25 16 39 39 H 1.00903 * 111.00521 * 213.98021 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0980 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5535 3.6180 -0.6731 8 14 3.4380 3.4169 -3.4339 9 1 2.3078 4.2592 -3.9012 10 1 4.6980 4.2003 -3.4959 11 1 3.5561 2.2197 -4.3044 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 16 2.5614 -3.8481 -0.0005 16 6 1.4413 -5.2082 -0.0013 17 7 0.1292 -5.1369 0.0039 18 7 -0.3784 -6.3174 -0.0023 19 6 0.5802 -7.2178 -0.0022 20 6 0.4082 -8.6790 -0.0022 21 6 -0.7421 -9.3493 0.2879 22 6 -0.4536 -10.7221 0.1632 23 6 0.8447 -10.8237 -0.1844 24 8 1.3625 -9.5882 -0.2835 25 7 1.7758 -6.5335 -0.0021 26 7 3.0329 -7.0677 -0.0019 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8901 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6085 2.0283 0.5139 31 1 3.1500 1.1383 0.5138 32 1 4.0297 4.4442 -0.8503 33 1 0.7583 -2.5298 -0.8904 34 1 0.7589 -2.5302 0.8896 35 1 -1.6919 -8.9123 0.5587 36 1 -1.1419 -11.5394 0.3203 37 1 1.3803 -11.7460 -0.3545 38 1 3.3652 -7.2102 0.9402 39 1 3.0605 -7.9277 -0.5289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003309975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:25 Heat of formation + Delta-G solvation = 97.325970 kcal Electronic energy + Delta-G solvation = -25263.457749 eV Core-core repulsion = 21337.292340 eV Total energy + Delta-G solvation = -3926.165409 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.43364 -42.84633 -39.00464 -36.82666 -34.93541 -33.78719 -32.69605 -32.33426 -30.28189 -30.13345 -28.91784 -27.42007 -25.70632 -23.96331 -23.37578 -22.73133 -21.92571 -21.25507 -19.43353 -18.70774 -17.96515 -17.69199 -17.04804 -16.63520 -16.61245 -16.41475 -15.85181 -15.47458 -15.19218 -15.03109 -14.27909 -13.86865 -13.54839 -13.42912 -13.22578 -13.17862 -12.66653 -12.37717 -12.21088 -12.01839 -11.87719 -11.79512 -11.24419 -11.12891 -10.95377 -10.89798 -10.61650 -10.48871 -10.40700 -10.17580 -10.05346 -9.65856 -9.17987 -8.96505 -8.44626 -7.76969 -7.60861 -6.05671 -4.10567 0.41136 0.82535 1.49941 1.71128 2.00578 2.01408 2.11002 2.59081 3.20650 3.30950 3.37679 3.42867 3.48925 3.85505 4.19549 4.38655 4.44101 4.58088 4.75516 4.82548 4.94832 5.15438 5.19897 5.28509 5.29152 5.39553 5.43034 5.45336 5.69097 5.85131 5.92267 6.01993 6.21546 6.36113 6.91856 6.95499 7.37956 7.44966 7.89822 8.12958 8.19780 8.25885 8.78783 8.96594 9.54471 11.02475 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.029031 B = 0.002099 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.267855 B =13339.402625 C =13599.814719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.592 5.592 3 C 0.245 3.755 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.529 6.529 14 C -0.154 4.154 15 S 0.121 5.879 16 C 0.187 3.813 17 N -0.287 5.287 18 N -0.234 5.234 19 C 0.211 3.789 20 C 0.040 3.960 21 C -0.135 4.135 22 C -0.209 4.209 23 C -0.017 4.017 24 O -0.184 6.184 25 N -0.304 5.304 26 N -0.578 5.578 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.213 0.787 38 H 0.368 0.632 39 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.151 -29.164 3.950 30.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.324 5.324 3 C 0.126 3.874 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.306 3.694 13 O -0.407 6.407 14 C -0.306 4.306 15 S 0.349 5.651 16 C -0.185 4.185 17 N -0.134 5.134 18 N -0.078 5.078 19 C -0.056 4.056 20 C -0.012 4.012 21 C -0.157 4.157 22 C -0.228 4.228 23 C -0.085 4.085 24 O -0.080 6.080 25 N -0.087 5.087 26 N -0.210 5.210 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.181 0.819 36 H 0.177 0.823 37 H 0.229 0.771 38 H 0.186 0.814 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.035 -27.550 3.560 28.427 hybrid contribution -0.522 -1.343 -0.536 1.537 sum -6.557 -28.893 3.024 29.782 Atomic orbital electron populations 1.21748 0.80875 1.03056 1.00904 1.48075 1.06517 1.07263 1.70505 1.19379 0.92639 0.77578 0.97764 1.21417 1.36721 1.06371 0.92182 0.92330 1.24935 0.95274 0.96365 0.97519 1.69927 1.38308 1.14293 1.30760 0.86479 0.77679 0.78621 0.84564 1.20625 1.21071 1.19830 1.19291 0.87650 0.83962 0.78456 1.90723 1.13169 1.86460 1.50302 1.23988 1.02444 0.95349 1.08848 1.86719 1.00250 0.87570 1.90527 1.27508 0.97689 0.88407 1.04906 1.74917 1.02402 1.14127 1.21972 1.74387 1.23246 0.94395 1.15750 1.21705 0.83025 0.90468 1.10405 1.18270 0.88736 0.84196 1.09947 1.21896 0.98581 0.92771 1.02456 1.21877 0.96692 0.97154 1.07125 1.24280 0.94859 0.85391 1.04016 1.83966 1.38419 1.15815 1.69762 1.45082 1.02083 1.05020 1.56502 1.59725 1.02075 1.37329 1.21868 0.93259 0.90349 0.92073 0.94598 0.93572 0.92666 0.85981 0.86176 0.81904 0.82284 0.77056 0.81365 0.80226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.24 59.84 0.61 1.83 16 2 N -0.59 -12.36 2.86 -182.96 -0.52 -12.88 16 3 C 0.25 6.33 5.16 -5.20 -0.03 6.30 16 4 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.52 10.69 7.69 -10.98 -0.08 10.60 16 13 O -0.53 -12.94 15.44 5.56 0.09 -12.85 16 14 C -0.15 -2.38 4.26 36.01 0.15 -2.23 16 15 S 0.12 1.83 21.40 -107.50 -2.30 -0.47 16 16 C 0.19 2.69 8.20 -88.11 -0.72 1.97 16 17 N -0.29 -4.42 11.58 30.73 0.36 -4.07 16 18 N -0.23 -3.44 12.22 32.50 0.40 -3.04 16 19 C 0.21 2.64 7.95 -153.70 -1.22 1.42 16 20 C 0.04 0.39 7.13 -36.69 -0.26 0.13 16 21 C -0.13 -1.12 10.85 -39.32 -0.43 -1.54 16 22 C -0.21 -1.18 10.88 -39.83 -0.43 -1.61 16 23 C -0.02 -0.08 12.08 29.51 0.36 0.27 16 24 O -0.18 -1.39 9.36 4.32 0.04 -1.35 16 25 N -0.30 -3.71 3.84 -10.47 -0.04 -3.75 16 26 N -0.58 -5.12 10.41 60.35 0.63 -4.49 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 1.25 8.07 -51.92 -0.42 0.83 16 29 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.12 1.75 7.40 -51.91 -0.38 1.37 16 34 H 0.12 1.62 8.11 -51.92 -0.42 1.20 16 35 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.16 0.49 8.06 -52.48 -0.42 0.07 16 37 H 0.21 0.14 8.06 -52.48 -0.42 -0.28 16 38 H 0.37 2.42 9.21 -181.37 -1.67 0.75 16 39 H 0.38 2.65 7.69 -181.37 -1.39 1.26 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -35.85 361.38 -9.33 -45.18 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -6.66 Total: -2.50 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.47 Total: 3.61 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 1.55 Total: -53.91 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.13 Total: -14.20 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.30 Total: -0.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.85 -9.33 -45.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003309975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.507 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds